Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020579 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 7.9e-121 437.2 230 100.0
CSS0005072 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 4.8e-102 374.8 230 79.1
Actinidia12040 Actinidia chinensis HOM05D006615 ORTHO05D007999 1.1e-98 363.6 223 80.7
vmacro05309 Vaccinium macrocarpon HOM05D006615 ORTHO05D007999 5.1e-96 354.8 227 81.5
Rhsim10G0115300 Rhododendron simsii HOM05D006615 ORTHO05D007999 7.4e-95 350.9 227 82.4
Haze_15377 Corylus avellana HOM05D006615 ORTHO05D007999 5.0e-91 338.2 225 80.4
GSVIVG01022099001 Vitis vinifera HOM05D006615 ORTHO05D007999 1.1e-90 337.0 226 73.0
Hma1.2p1_0670F.1_g200450 Hydrangea macrophylla HOM05D006615 ORTHO05D007999 8.0e-89 330.9 230 71.3
TAR625G0931 Trochodendron aralioides HOM05D006615 ORTHO05D007999 3.0e-88 328.9 226 76.5
QL06p040870 Quercus lobata HOM05D006615 ORTHO05D007999 6.7e-88 327.8 225 78.7
COL.COLO4_11446 Corchorus olitorius HOM05D006615 ORTHO05D007999 8.8e-88 327.4 229 77.3
Aqoxy5G01194 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 2.0e-87 326.2 223 70.9
RcHm_v2.0_Chr2g0105951 Rosa chinensis HOM05D006615 ORTHO05D007999 5.7e-87 324.7 225 76.9
Gohir.D12G070500 Gossypium hirsutum HOM05D006615 ORTHO05D007999 7.4e-87 324.3 227 74.4
Gorai.008G077500 Gossypium raimondii HOM05D006615 ORTHO05D007999 7.4e-87 324.3 227 74.4
MD15G1285700 Malus domestica HOM05D006615 ORTHO05D007999 7.4e-87 324.3 225 77.3
Cpa.g.sc55.125 Carica papaya HOM05D006615 ORTHO05D007999 1.7e-86 323.2 226 72.6
Gohir.A12G072600 Gossypium hirsutum HOM05D006615 ORTHO05D007999 1.7e-86 323.2 227 77.5
Nn5g30349 Nelumbo nucifera HOM05D006615 ORTHO05D007999 1.7e-86 323.2 230 73.9
Sabra07G0040600 Salix brachista HOM05D006615 ORTHO05D007999 2.8e-86 322.4 226 71.7
Prupe.7G131100 Prunus persica HOM05D006615 ORTHO05D007999 4.8e-86 321.6 225 77.8
FAN23G1998 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.1e-85 320.5 225 76.0
FAN28G0965 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.4e-85 320.1 225 76.0
Duzib147G0216 Durio zibethinus HOM05D006615 ORTHO05D007999 1.8e-85 319.7 226 76.5
Gohir.A02G156700 Gossypium hirsutum HOM05D006615 ORTHO05D007999 3.1e-85 318.9 226 77.4
FAN26G2627 Fragaria x ananassa HOM05D006615 ORTHO05D007999 4.1e-85 318.5 225 75.6
TAR381G0796 Trochodendron aralioides HOM05D006615 ORTHO05D007999 4.1e-85 318.5 226 74.8
CiPaw.01G016200 Carya illinoinensis HOM05D006615 ORTHO05D007999 5.3e-85 318.2 208 73.6
FvH4_1g16240 Fragaria vesca HOM05D006615 ORTHO05D007999 1.6e-84 316.6 225 75.1
Gorai.003G025500 Gossypium raimondii HOM05D006615 ORTHO05D007999 1.6e-84 316.6 226 77.0
Atru.chr3.300 Acer truncatum HOM05D006615 ORTHO05D007999 2.0e-84 316.2 230 73.9
Ciclev10026421m.g Citrus clementina HOM05D006615 ORTHO05D007999 2.0e-84 316.2 225 75.1
MD02G1174700 Malus domestica HOM05D006615 ORTHO05D007999 2.0e-84 316.2 225 76.0
Ah.03g145470 Amaranthus hybridus HOM05D006615 ORTHO05D007999 3.5e-84 315.5 213 71.8
PSO170G0414 Papaver somniferum HOM05D006615 ORTHO05D007999 3.5e-84 315.5 231 67.5
Oeu014828.1 Olea europaea HOM05D006615 ORTHO05D007999 7.7e-84 314.3 226 71.7
PSO210G0040 Papaver somniferum HOM05D006615 ORTHO05D007999 1.0e-83 313.9 231 67.1
Gohir.D03G024000 Gossypium hirsutum HOM05D006615 ORTHO05D007999 1.3e-83 313.5 226 76.5
Sabra05G0110900 Salix brachista HOM05D006615 ORTHO05D007999 1.7e-83 313.2 228 74.1
AUR62001910 Chenopodium quinoa HOM05D006615 ORTHO05D007999 3.8e-83 312.0 219 69.4
Dinv26838 Davidia involucrata HOM05D000573 ORTHO05D000425 5.0e-83 311.6 188 80.9
FAN19G1431 Fragaria x ananassa HOM05D006615 ORTHO05D007999 6.5e-83 311.2 225 74.2
AUR62003898 Chenopodium quinoa HOM05D006615 ORTHO05D007999 8.5e-83 310.8 219 68.9
Potri.005G140000 Populus trichocarpa HOM05D006615 ORTHO05D007999 1.1e-82 310.5 226 74.3
Cc07_g06140 Coffea canephora HOM05D006615 ORTHO05D007999 1.5e-82 310.1 224 72.3
THA.LOC104821250 Tarenaya hassleriana HOM05D006615 ORTHO05D007999 1.5e-82 310.1 217 77.4
Sc03g0001700 Simmondsia chinensis HOM05D006615 ORTHO05D007999 1.9e-82 309.7 226 67.7
AL8G44220 Arabidopsis lyrata HOM05D006615 ORTHO05D007999 4.2e-82 308.5 217 75.6
Cfa004036 Carpinus fangiana HOM05D006615 ORTHO05D007999 4.2e-82 308.5 208 79.8
Thecc.01G059100 Theobroma cacao HOM05D006615 ORTHO05D007999 4.2e-82 308.5 209 78.9
Manes.12G104500 Manihot esculenta HOM05D006615 ORTHO05D007999 9.4e-82 307.4 226 73.5
MSTRG.2870 Avicennia marina HOM05D006615 ORTHO05D007999 1.6e-81 306.6 226 67.7
Thhalv10004869m.g Eutrema salsugineum HOM05D006615 ORTHO05D007999 2.7e-81 305.8 214 75.7
C07p24600 Brassica napus HOM05D006615 ORTHO05D007999 3.6e-81 305.4 217 74.7
BolC7t42980H Brassica oleracea HOM05D006615 ORTHO05D007999 3.6e-81 305.4 217 74.7
BraA07t29407Z Brassica rapa HOM05D006615 ORTHO05D007999 3.6e-81 305.4 217 74.7
BcaB02g09933 Brassica carinata HOM05D006615 ORTHO05D007999 8.0e-81 304.3 217 74.7
AT5G67140 Arabidopsis thaliana HOM05D006615 ORTHO05D007999 1.0e-80 303.9 217 75.1
A07p16820 Brassica napus HOM05D006615 ORTHO05D007999 1.4e-80 303.5 217 74.2
Sed0009491 Sechium edule HOM05D006615 ORTHO05D007999 1.4e-80 303.5 225 70.7
Carub.0008s2737 Capsella rubella HOM05D006615 ORTHO05D007999 1.8e-80 303.1 217 74.2
CARHR280510 Cardamine hirsuta HOM05D006615 ORTHO05D007999 2.3e-80 302.8 217 74.2
TPR.G26907 Trifolium pratense HOM05D006615 ORTHO05D007999 2.3e-80 302.8 207 72.9
Peaxi162Scf00549g00014 Petunia axillaris HOM05D006615 ORTHO05D007999 3.0e-80 302.4 216 73.1
CDE02G1946 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 8.8e-80 300.8 224 69.6
ClCG02G012310 Citrullus lanatus HOM05D006615 ORTHO05D007999 1.2e-79 300.4 225 71.6
Migut.H00418 Erythranthe guttata HOM05D006615 ORTHO05D007999 1.5e-79 300.1 226 70.4
Oeu049899.1 Olea europaea HOM05D006615 ORTHO05D007999 1.5e-79 300.1 219 72.6
Psat2g167840 Pisum sativum HOM05D006615 ORTHO05D007999 1.5e-79 300.1 207 72.5
Sp2g29550 Schrenkiella parvula HOM05D006615 ORTHO05D007999 1.5e-79 300.1 216 73.1
Sopen02g037800 Solanum pennellii HOM05D006615 ORTHO05D007999 1.5e-79 300.1 224 70.5
HanXRQChr09g0263661 Helianthus annuus HOM05D006615 ORTHO05D007999 2.6e-79 299.3 228 68.9
Solyc02g093220.3 Solanum lycopersicum HOM05D006615 ORTHO05D007999 2.6e-79 299.3 224 70.1
PGSC0003DMG400004030 Solanum tuberosum HOM05D006615 ORTHO05D007999 2.6e-79 299.3 224 70.1
CsaV3_2G016460 Cucumis sativus L. HOM05D006615 ORTHO05D007999 3.3e-79 298.9 225 71.1
CAN.G370.40 Capsicum annuum HOM05D006615 ORTHO05D007999 5.7e-79 298.1 212 73.6
Aa31LG1G15650 Aethionema arabicum HOM05D006615 ORTHO05D007999 1.3e-78 297.0 226 70.4
MELO3C020856.2 Cucumis melo HOM05D006615 ORTHO05D007999 2.2e-78 296.2 234 69.2
Hund16348 Selenicereus undatus HOM05D006615 ORTHO05D007999 3.7e-78 295.4 272 56.6
DCAR_010880 Daucus carota HOM05D006615 ORTHO05D007999 6.3e-78 294.7 223 68.2
Nitab4.5_0002694g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 6.3e-78 294.7 216 71.8
CDE04G2757 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 8.2e-78 294.3 223 68.2
Lj4C151G8 Lonicera japonica HOM05D006615 ORTHO05D007999 9.1e-77 290.8 208 72.1
Lsat_1_v5_gn_4_164980 Lactuca sativa HOM05D006615 ORTHO05D007999 1.6e-76 290.0 223 68.2
Glyma.11G054300 Glycine max HOM05D006615 ORTHO05D007999 3.5e-76 288.9 207 75.4
Medtr5g016890 Medicago truncatula HOM05D006615 ORTHO05D007999 3.5e-76 288.9 207 74.4
TWI09G1033 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 7.7e-76 287.7 220 64.5
ATR0800G077 Amborella trichopoda HOM05D006615 ORTHO05D007999 1.3e-75 287.0 226 69.5
Eucgr.H01687 Eucalyptus grandis HOM05D006615 ORTHO05D007999 1.3e-75 287.0 208 66.3
Nitab4.5_0002765g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 1.7e-75 286.6 216 70.8
Phvul.002G017400 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 6.5e-75 284.6 207 74.4
HPP92_026439 Vanilla planifolia HOM05D006615 ORTHO05D007999 8.5e-75 284.3 211 72.0
Lalb_Chr16g0378591 Lupinus albus HOM05D006615 ORTHO05D007999 1.1e-74 283.9 207 73.4
Actinidia36482 Actinidia chinensis HOM05D006615 ORTHO05D007999 1.5e-74 283.5 209 72.2
Lalb_Chr05g0213321 Lupinus albus HOM05D006615 ORTHO05D007999 1.5e-74 283.5 207 67.6
Lj2g0018871 Lotus japonicus HOM05D006615 ORTHO05D007999 2.5e-74 282.7 205 75.1
Glyma.01G187800 Glycine max HOM05D006615 ORTHO05D007999 5.5e-74 281.6 198 76.8
arahy.Tifrunner.gnm1.ann1.XJ9ES7 Arachis hypogaea HOM05D006615 ORTHO05D007999 2.7e-73 279.3 213 72.3
arahy.Tifrunner.gnm1.ann1.8K3JW9 Arachis hypogaea HOM05D006615 ORTHO05D007999 1.4e-72 276.9 213 71.8
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 6.8e-72 274.6 168 75.6
VMungo1215G1750 Vigna mungo HOM05D006615 ORTHO05D007999 6.8e-72 274.6 207 73.9
Atru.chr3.288 Acer truncatum HOM05D006615 ORTHO05D007999 1.5e-71 273.5 202 72.8
Oeu017456.1 Olea europaea HOM05D006615 ORTHO05D007999 3.4e-71 272.3 227 64.3
MELO3C020857.2 Cucumis melo HOM05D006615 ORTHO05D007999 7.7e-68 261.2 210 66.7
CsaV3_2G016470 Cucumis sativus L. HOM05D006615 ORTHO05D007999 3.8e-67 258.8 210 66.2
SEGI_10636 Sequoiadendron giganteum HOM05D006615 ORTHO05D007999 4.2e-66 255.4 208 65.4
Os06g0166000 Oryza sativa ssp. japonica HOM05D006615 ORTHO05D007999 8.0e-65 251.1 218 59.2
Zm00001eb375600 Zea mays HOM05D006615 ORTHO05D007999 1.0e-64 250.8 218 58.7
CANSAT01G0297 Cannabis sativa HOM05D006615 ORTHO05D007999 5.2e-64 248.4 215 60.9
SGA_v2.0_scaffold15G07326 Striga asiatica HOM05D006615 ORTHO05D007999 1.1e-58 230.7 226 61.1
Aqoxy6G01271 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 1.7e-51 206.8 226 56.6
unitig_748.g8604 Utricularia gibba HOM05D002191 ORTHO05D007999 1.5e-50 203.8 194 54.6
Mapoly0005s0095 Marchantia polymorpha HOM05D006615 ORTHO05D007999 5.6e-50 201.8 209 48.3
Pp3c7_15700 Physcomitrium patens HOM05D006615 ORTHO05D007999 6.2e-49 198.4 204 52.5
AagrBONN_evm.TU.Sc2ySwM_344.5234 Anthoceros agrestis HOM05D006615 ORTHO05D007999 3.7e-46 189.1 206 52.4
TWI73G1298 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 1.9e-45 186.8 139 64.7
SMO164G0246 Selaginella moellendorffii HOM05D006615 ORTHO05D007999 2.2e-38 163.3 211 47.4
Potri.007G045601 Populus trichocarpa HOM05D006615 ORTHO05D007999 7.3e-34 148.3 97 77.3
MSTRG.3434 Avicennia marina HOM05D006615 ORTHO05D007999 4.9e-22 109.0 102 64.7
ClCG02G012330 Citrullus lanatus HOM05D006615 ORTHO05D007999 2.6e-15 86.7 78 53.8
Phvul.008G146300 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 4.9e-14 82.4 46 80.4
EL10Ac6g15726 Beta vulgaris HOM05D006615 ORTHO05D007999 3.2e-13 79.7 98 49.0
FAN20G2926 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.4e-07 59.7 147 29.9
Carub.0006s3341 Capsella rubella HOM05D000710 ORTHO05D000336 4.5e-07 59.3 160 28.8
Sc03g0001840 Simmondsia chinensis HOM05D001905 ORTHO05D001820 4.5e-07 59.3 160 29.4
FAN15G1401 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.6e-07 58.5 108 33.3
FAN23G0561 Fragaria x ananassa HOM05D000710 ORTHO05D000336 7.6e-07 58.5 157 29.9
Aqoxy4G02446 Aquilegia oxysepala HOM05D001818 ORTHO05D001780 1.0e-06 58.2 80 33.8
A09p02890 Brassica napus HOM05D000710 ORTHO05D000336 1.0e-06 58.2 159 27.7
Medtr5g016930 Medicago truncatula HOM05D006615 ORTHO05D007999 1.7e-06 57.4 53 52.8
Thhalv10023830m.g Eutrema salsugineum HOM05D000710 ORTHO05D000336 2.9e-06 56.6 209 24.4
FvH4_1g14800 Fragaria vesca HOM05D000710 ORTHO05D000336 2.9e-06 56.6 157 29.9
FvH4_2g32590 Fragaria vesca HOM05D002813 ORTHO05D003203 2.9e-06 56.6 112 33.9
FAN24G0821 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.9e-06 56.6 112 33.9
Carub.0006s3338 Capsella rubella HOM05D000710 ORTHO05D000336 3.8e-06 56.2 162 28.4
FAN19G1902 Fragaria x ananassa HOM05D000710 ORTHO05D000336 6.4e-06 55.5 157 29.3
BcaC07g42481 Brassica carinata HOM05D000710 ORTHO05D000336 8.4e-06 55.1 162 28.4
RcHm_v2.0_Chr3g0487451 Rosa chinensis HOM05D032618 ORTHO05D007999 8.4e-06 55.1 52 50.0


User provided reference genes

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