Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020566 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 3.1e-88 328.6 180 100.0
CSS0026794 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 8.2e-65 250.8 234 67.5
CSS0003429 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 6.1e-52 208.0 224 56.2
CSS0039249 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 3.5e-47 192.2 214 55.1
CSS0048320 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 4.4e-42 175.3 221 51.6
CSS0020150 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 2.1e-36 156.4 136 63.2
CSS0025868 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 9.5e-29 131.0 138 55.8
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 1.0e-19 100.9 128 46.1
Actinidia20182 Actinidia chinensis HOM05D011412 ORTHO05D009969 1.5e-18 97.1 148 39.9
Dinv40186 Davidia involucrata HOM05D009853 ORTHO05D009969 2.0e-18 96.7 168 38.1
vmacro23014 Vaccinium macrocarpon HOM05D011412 ORTHO05D009969 2.2e-17 93.2 160 38.8
Dinv30482 Davidia involucrata HOM05D009853 ORTHO05D009969 9.2e-16 87.8 133 38.3
Dinv38023 Davidia involucrata HOM05D011412 ORTHO05D009969 2.7e-15 86.3 161 37.3
Rhsim08G0027100 Rhododendron simsii HOM05D011412 ORTHO05D009969 2.7e-15 86.3 133 37.6
CSS0019303 Camellia sinensis var. sinensis HOM05D009853 ORTHO05D009969 1.0e-14 84.3 107 43.9
Rhsim08G0215000 Rhododendron simsii HOM05D011412 ORTHO05D009969 6.6e-14 81.6 166 34.3
CAN.G1238.8 Capsicum annuum HOM05D006716 ORTHO05D008396 6.2e-12 75.1 121 35.5
Solyc05g013370.1 Solanum lycopersicum HOM05D013339 ORTHO05D009969 2.3e-11 73.2 130 35.4
PGSC0003DMG400018623 Solanum tuberosum HOM05D013339 ORTHO05D009969 2.3e-11 73.2 127 37.8
Rhsim07G0189200 Rhododendron simsii HOM05D009853 ORTHO05D009969 2.0e-10 70.1 141 35.5
Sopen05g008160 Solanum pennellii HOM05D013339 ORTHO05D009969 2.0e-10 70.1 123 35.0
PGSC0003DMG400007682 Solanum tuberosum HOM05D013339 ORTHO05D009969 4.9e-09 65.5 144 34.0
Oeu031750.4 Olea europaea HOM05D041624 ORTHO05D009969 6.4e-09 65.1 56 46.4
Dinv42114 Davidia involucrata HOM05D011412 ORTHO05D009969 5.4e-08 62.0 129 34.1
DCAR_007526 Daucus carota HOM05D009853 ORTHO05D009969 7.0e-08 61.6 52 48.1
Nitab4.5_0003774g0010 Nicotiana tabacum HOM05D038292 ORTHO05D009969 9.2e-08 61.2 99 39.4
CSS0008018 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.2e-07 60.8 66 48.5
TAR365G0201 Trochodendron aralioides HOM05D000307 ORTHO05D000166 1.6e-07 60.5 50 52.0
Nitab4.5_0029272g0020 Nicotiana tabacum HOM05D009853 ORTHO05D009969 2.0e-07 60.1 117 36.8
Oeu019130.1 Olea europaea HOM05D000042 ORTHO05D000028 2.0e-07 60.1 56 53.6
Potri.007G120002 Populus trichocarpa HOM05D000042 ORTHO05D000028 2.0e-07 60.1 58 48.3
CSS0003566 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.5e-07 59.3 66 47.0
CSS0013985 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.5e-07 59.3 66 47.0
CSS0019629 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.5e-07 59.3 66 47.0
CSS0028822 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.5e-07 59.3 66 47.0
Sopen01g046240 Solanum pennellii HOM05D000600 ORTHO05D000432 3.5e-07 59.3 64 46.9
PGSC0003DMG400024902 Solanum tuberosum HOM05D009853 ORTHO05D009969 3.5e-07 59.3 64 45.3
CSS0000924 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 4.6e-07 58.9 66 45.5
Oeu029235.1 Olea europaea HOM05D011412 ORTHO05D009969 4.6e-07 58.9 117 29.9
Oeu029234.1 Olea europaea HOM05D011412 ORTHO05D009969 7.8e-07 58.2 117 31.6
Nitab4.5_0000948g0200 Nicotiana tabacum HOM05D009853 ORTHO05D009969 1.0e-06 57.8 118 35.6
PGSC0003DMG400026881 Solanum tuberosum HOM05D009853 ORTHO05D009969 1.0e-06 57.8 63 46.0
Peaxi162Scf00011g00077 Petunia axillaris HOM05D009853 ORTHO05D009969 1.3e-06 57.4 123 33.3
PGSC0003DMG400026582 Solanum tuberosum HOM05D009853 ORTHO05D009969 1.3e-06 57.4 63 46.0
SGA_v2.0_scaffold304G47921 Striga asiatica HOM05D000307 ORTHO05D000166 1.7e-06 57.0 61 41.0
CAN.G798.34 Capsicum annuum HOM05D009853 ORTHO05D009969 2.3e-06 56.6 62 48.4
Psat6g001960 Pisum sativum HOM05D000307 ORTHO05D000166 2.3e-06 56.6 62 43.5
PGSC0003DMG400033092 Solanum tuberosum HOM05D009853 ORTHO05D009969 2.3e-06 56.6 63 46.0
CSS0012311 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.0e-06 56.2 66 43.9
Sopen01g046270 Solanum pennellii HOM05D000600 ORTHO05D000432 3.0e-06 56.2 59 47.5
CSS0034462 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.9e-06 55.8 66 45.5
AUR62016454 Chenopodium quinoa HOM05D000042 ORTHO05D000980 3.9e-06 55.8 60 45.0
AUR62019397 Chenopodium quinoa HOM05D000042 ORTHO05D000980 3.9e-06 55.8 60 45.0
PGSC0003DMG400036234 Solanum tuberosum HOM05D009853 ORTHO05D009969 3.9e-06 55.8 63 42.9
BcaB01g01690 Brassica carinata HOM05D000042 ORTHO05D000028 5.0e-06 55.5 139 29.5
Psat1g082000 Pisum sativum HOM05D000307 ORTHO05D000166 5.0e-06 55.5 67 40.3
Solyc01g103870.1 Solanum lycopersicum HOM05D009853 ORTHO05D009969 5.0e-06 55.5 66 43.9
MBI07_g09577_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 6.6e-06 55.1 65 38.5
MSTRG.14156 Avicennia marina HOM05D000042 ORTHO05D000028 8.6e-06 54.7 56 46.4
Dinv18542 Davidia involucrata HOM05D000042 ORTHO05D000028 8.6e-06 54.7 59 44.1
FAN20G0315 Fragaria x ananassa HOM05D000307 ORTHO05D000166 8.6e-06 54.7 66 39.4
PGSC0003DMG400016838 Solanum tuberosum HOM05D009853 ORTHO05D009969 8.6e-06 54.7 139 31.7


User provided reference genes

Program Settings