Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 2.2e-67 258.8 134 100.0
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 1.7e-54 216.1 134 83.6
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 8.5e-51 203.8 134 80.6
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 3.2e-50 201.8 134 79.9
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 4.2e-50 201.4 134 78.4
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 7.2e-50 200.7 134 76.1
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 7.2e-50 200.7 134 78.4
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 1.2e-49 199.9 134 80.6
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 4.7e-49 198.0 134 78.4
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 8.0e-49 197.2 134 79.1
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 1.0e-48 196.8 134 78.4
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 1.4e-48 196.4 134 77.6
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 3.0e-48 195.3 134 74.6
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 3.0e-48 195.3 134 76.9
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 3.0e-48 195.3 134 76.1
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 5.2e-48 194.5 134 76.1
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 5.2e-48 194.5 134 76.1
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 1.5e-47 193.0 134 73.9
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 2.6e-47 192.2 135 76.3
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 2.6e-47 192.2 134 76.9
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 3.4e-47 191.8 134 75.4
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 4.4e-47 191.4 134 75.4
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 4.4e-47 191.4 128 77.3
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 5.7e-47 191.0 134 73.1
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 7.5e-47 190.7 134 77.6
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 7.5e-47 190.7 134 74.6
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 1.3e-46 189.9 134 74.6
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 1.7e-46 189.5 134 76.1
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 1.7e-46 189.5 134 72.4
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 2.2e-46 189.1 134 71.6
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 2.2e-46 189.1 134 73.1
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 2.8e-46 188.7 134 72.4
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 3.7e-46 188.3 134 72.4
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 3.7e-46 188.3 134 74.6
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 4.9e-46 188.0 134 75.4
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 4.9e-46 188.0 132 72.7
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 6.3e-46 187.6 134 76.1
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 6.3e-46 187.6 134 74.6
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 6.3e-46 187.6 134 74.6
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 6.3e-46 187.6 134 73.1
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 6.3e-46 187.6 134 73.1
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 1.1e-45 186.8 134 73.9
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 1.1e-45 186.8 134 73.9
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 1.4e-45 186.4 134 74.6
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 1.4e-45 186.4 128 74.2
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 1.8e-45 186.0 134 73.1
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 1.8e-45 186.0 134 70.9
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 2.4e-45 185.7 134 74.6
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 2.4e-45 185.7 134 74.6
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 2.4e-45 185.7 134 77.6
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.4e-45 185.7 134 73.9
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 3.1e-45 185.3 134 73.9
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 3.1e-45 185.3 134 73.9
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 4.1e-45 184.9 134 76.1
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 5.4e-45 184.5 134 72.4
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 5.4e-45 184.5 134 73.9
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 5.4e-45 184.5 133 72.2
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 7.0e-45 184.1 134 73.9
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 7.0e-45 184.1 136 73.5
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 9.1e-45 183.7 134 70.1
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 1.6e-44 183.0 134 71.6
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.6e-44 183.0 134 75.4
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 3.5e-44 181.8 134 74.6
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 3.5e-44 181.8 134 73.1
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 4.5e-44 181.4 134 70.9
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 4.5e-44 181.4 134 70.9
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 4.5e-44 181.4 135 73.3
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 4.5e-44 181.4 134 76.1
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 5.9e-44 181.0 109 85.3
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 7.7e-44 180.6 134 70.9
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 1.0e-43 180.3 134 71.6
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 1.7e-43 179.5 138 73.2
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 1.7e-43 179.5 138 72.5
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 2.3e-43 179.1 136 71.3
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.3e-43 179.1 138 73.2
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.3e-43 179.1 138 73.2
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.9e-43 178.7 138 73.2
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.9e-43 178.7 138 73.2
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.9e-43 178.7 138 73.2
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 6.6e-43 177.6 138 72.5
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 6.6e-43 177.6 138 73.9
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 1.1e-42 176.8 125 74.4
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 1.1e-42 176.8 138 72.5
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.1e-42 176.8 138 72.5
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 3.3e-42 175.3 132 71.2
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.3e-42 175.3 138 73.2
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 3.3e-42 175.3 117 77.8
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 4.2e-42 174.9 134 67.2
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 5.6e-42 174.5 110 78.2
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 5.6e-42 174.5 136 72.1
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 7.2e-42 174.1 135 70.4
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 2.1e-41 172.6 134 68.7
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 8.0e-41 170.6 118 75.4
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 1.8e-40 169.5 110 76.4
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 6.8e-40 167.5 133 66.9
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 6.8e-40 167.5 108 78.7
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 8.9e-40 167.2 118 72.0
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 2.0e-39 166.0 134 64.9
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 2.6e-39 165.6 121 71.9
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 2.6e-39 165.6 110 76.4
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 5.7e-39 164.5 134 67.9
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 5.7e-39 164.5 134 64.9
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 7.5e-39 164.1 110 76.4
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 7.5e-39 164.1 110 76.4
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 7.5e-39 164.1 110 76.4
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 7.5e-39 164.1 110 76.4
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 1.7e-38 162.9 134 66.4
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 3.2e-37 158.7 134 64.9
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 1.2e-36 156.8 133 62.4
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.2e-36 156.8 99 83.8
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 2.0e-36 156.0 134 63.4
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 2.7e-36 155.6 132 63.6
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 2.7e-36 155.6 134 65.7
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 7.8e-36 154.1 92 81.5
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 2.3e-35 152.5 118 71.2
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 2.3e-35 152.5 132 62.9
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 5.0e-35 151.4 92 79.3
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 8.6e-35 150.6 100 75.0
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 2.5e-34 149.1 92 78.3
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 8.0e-33 144.1 112 67.9
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 1.0e-32 143.7 134 60.4
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 4.0e-32 141.7 134 55.2
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 3.4e-31 138.7 120 66.7
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 7.5e-31 137.5 126 61.9
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 1.7e-30 136.3 91 75.8
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 7.0e-29 131.0 104 65.4
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 4.0e-24 115.2 93 68.8
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.7e-22 109.8 59 88.1
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 2.4e-21 105.9 92 57.6
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 2.7e-20 102.4 107 53.3
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 3.5e-20 102.1 104 53.8
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 3.9e-19 98.6 90 54.4
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 1.9e-18 96.3 110 46.4
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 6.2e-17 91.3 69 73.9
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.3e-14 83.6 52 73.1
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 9.2e-13 77.4 62 64.5
Actinidia36173 Actinidia chinensis HOM05D005499 ORTHO05D006666 1.7e-11 73.2 82 59.8
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 8.6e-11 70.9 106 42.5
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 9.6e-10 67.4 125 34.4
CDE04G0501 Ceratophyllum demersum HOM05D002849 ORTHO05D009472 1.8e-08 63.2 79 53.2
Dinv25304 Davidia involucrata HOM05D000009 ORTHO05D000008 3.1e-08 62.4 54 66.7
PRCOL_00001894 Prasinoderma coloniale HOM05D005499 ORTHO05D006666 9.9e-07 57.4 85 36.5


User provided reference genes

Program Settings