Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020548 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 6.9e-93 344.0 176 100.0
vmacro08400 Vaccinium macrocarpon HOM05D004338 ORTHO05D005205 2.8e-49 199.1 180 63.9
Rhsim04G0194700 Rhododendron simsii HOM05D004338 ORTHO05D005205 5.8e-47 191.4 159 67.9
Actinidia40096 Actinidia chinensis HOM05D004338 ORTHO05D005205 9.8e-47 190.7 166 64.5
Dinv14075 Davidia involucrata HOM05D004338 ORTHO05D005205 3.3e-42 175.6 167 59.9
Actinidia08449 Actinidia chinensis HOM05D004338 ORTHO05D005205 1.1e-40 170.6 159 58.5
Dinv44613 Davidia involucrata HOM05D004338 ORTHO05D005205 1.5e-39 166.8 176 55.7
CSS0020604 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 4.4e-39 165.2 117 75.2
Nitab4.5_0004203g0030 Nicotiana tabacum HOM05D004338 ORTHO05D005205 3.5e-36 155.6 153 54.2
QL06p015078 Quercus lobata HOM05D004338 ORTHO05D005205 3.9e-35 152.1 159 54.1
MD13G1204000 Malus domestica HOM05D004338 ORTHO05D005205 1.1e-34 150.6 176 50.0
CAN.G626.12 Capsicum annuum HOM05D004338 ORTHO05D005205 4.3e-34 148.7 152 53.3
Atru.chr4.2282 Acer truncatum HOM05D004338 ORTHO05D005205 9.5e-34 147.5 163 53.4
Migut.G00416 Erythranthe guttata HOM05D004338 ORTHO05D005205 1.6e-33 146.7 151 53.6
MD16G1206000 Malus domestica HOM05D004338 ORTHO05D005205 2.8e-33 146.0 159 52.2
MSTRG.21887 Avicennia marina HOM05D004338 ORTHO05D005205 3.6e-33 145.6 126 61.1
CANSAT78G1672 Cannabis sativa HOM05D004338 ORTHO05D005205 3.6e-33 145.6 150 52.0
Ciclev10004298m.g Citrus clementina HOM05D004338 ORTHO05D005205 4.7e-33 145.2 176 48.3
COL.COLO4_15767 Corchorus olitorius HOM05D004338 ORTHO05D005205 4.7e-33 145.2 156 50.6
Potri.008G160700 Populus trichocarpa HOM05D004338 ORTHO05D005205 8.1e-33 144.4 158 53.8
GSVIVG01018095001 Vitis vinifera HOM05D004338 ORTHO05D005205 8.1e-33 144.4 155 55.5
Duzib151G0366 Durio zibethinus HOM05D004338 ORTHO05D005205 2.4e-32 142.9 133 59.4
TPR.G14022 Trifolium pratense HOM05D004338 ORTHO05D005205 3.1e-32 142.5 165 50.3
Haze_11270 Corylus avellana HOM05D004338 ORTHO05D005205 4.0e-32 142.1 184 47.8
Prupe.1G027100 Prunus persica HOM05D004338 ORTHO05D005205 1.5e-31 140.2 176 47.7
TAR365G0259 Trochodendron aralioides HOM05D004338 ORTHO05D005205 1.5e-31 140.2 117 62.4
arahy.Tifrunner.gnm1.ann1.5I9I5Q Arachis hypogaea HOM05D004338 ORTHO05D005205 2.0e-31 139.8 187 48.1
Solyc09g083260.4 Solanum lycopersicum HOM05D004338 ORTHO05D005205 2.0e-31 139.8 153 50.3
Manes.03G170100 Manihot esculenta HOM05D004338 ORTHO05D005205 3.4e-31 139.0 124 56.5
Peaxi162Scf01416g00020 Petunia axillaris HOM05D004338 ORTHO05D005205 3.4e-31 139.0 117 60.7
CiPaw.02G117900 Carya illinoinensis HOM05D004338 ORTHO05D005205 4.4e-31 138.7 146 54.1
Sopen09g032180 Solanum pennellii HOM05D004338 ORTHO05D005205 4.4e-31 138.7 153 50.3
Glyma.20G210700 Glycine max HOM05D004338 ORTHO05D005205 5.8e-31 138.3 164 51.2
SalBow2G1414 Salvia bowleyana HOM05D004338 ORTHO05D005205 7.6e-31 137.9 115 61.7
arahy.Tifrunner.gnm1.ann1.EA06G0 Arachis hypogaea HOM05D004338 ORTHO05D005205 9.9e-31 137.5 187 47.6
RcHm_v2.0_Chr4g0389551 Rosa chinensis HOM05D004338 ORTHO05D005205 1.3e-30 137.1 161 50.3
Lj5g0007630 Lotus japonicus HOM05D004338 ORTHO05D005205 2.2e-30 136.3 161 49.7
Psat6g113560 Pisum sativum HOM05D004338 ORTHO05D005205 2.2e-30 136.3 161 48.4
Ca_09879_v3 Cicer arietinum L. HOM05D004338 ORTHO05D005205 3.8e-30 135.6 114 61.4
TWI09G1436 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 3.8e-30 135.6 159 50.9
Potri.010G078600 Populus trichocarpa HOM05D004338 ORTHO05D005205 1.4e-29 133.7 160 50.6
FAN12G0347 Fragaria x ananassa HOM05D004338 ORTHO05D005205 1.9e-29 133.3 158 47.5
FvH4_4g02230 Fragaria vesca HOM05D004338 ORTHO05D005205 2.4e-29 132.9 158 47.5
FAN22G2191 Fragaria x ananassa HOM05D004338 ORTHO05D005205 3.2e-29 132.5 165 45.5
Gohir.D10G152700 Gossypium hirsutum HOM05D004338 ORTHO05D005205 3.2e-29 132.5 163 46.6
PGR142G2602 Punica granatum HOM05D004338 ORTHO05D005205 5.4e-29 131.7 152 50.7
Sabra10G0064800 Salix brachista HOM05D004338 ORTHO05D005205 5.4e-29 131.7 159 52.8
Cfa008398 Carpinus fangiana HOM05D004338 ORTHO05D005205 1.2e-28 130.6 114 59.6
Glyma.10G179700 Glycine max HOM05D004338 ORTHO05D005205 1.2e-28 130.6 134 53.7
Gorai.011G170600 Gossypium raimondii HOM05D004338 ORTHO05D005205 1.2e-28 130.6 163 46.0
MD11G1069300 Malus domestica HOM05D004338 ORTHO05D005205 1.2e-28 130.6 163 47.2
SGA_v2.0_scaffold101G29777 Striga asiatica HOM05D004338 ORTHO05D005205 2.1e-28 129.8 117 59.0
Gohir.A10G114400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 2.7e-28 129.4 132 53.8
HanXRQChr12g0381191 Helianthus annuus HOM05D004338 ORTHO05D005205 4.6e-28 128.6 127 54.3
ECA233G2689 Erigeron canadensis HOM05D004338 ORTHO05D005205 7.8e-28 127.9 127 54.3
Eucgr.H00218 Eucalyptus grandis HOM05D004338 ORTHO05D005205 7.8e-28 127.9 121 56.2
TAR636G0266 Trochodendron aralioides HOM05D004338 ORTHO05D005205 1.0e-27 127.5 117 59.0
Medtr1g076330 Medicago truncatula HOM05D004338 ORTHO05D005205 1.3e-27 127.1 180 45.0
Gorai.006G245700 Gossypium raimondii HOM05D004338 ORTHO05D005205 1.7e-27 126.7 132 48.5
Lsat_1_v5_gn_5_67480 Lactuca sativa HOM05D004338 ORTHO05D005205 1.7e-27 126.7 127 55.1
Sc13g0004920 Simmondsia chinensis HOM05D004338 ORTHO05D005205 2.3e-27 126.3 111 56.8
Gohir.D09G224200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 3.0e-27 125.9 132 48.5
DCAR_002355 Daucus carota HOM05D004338 ORTHO05D005205 3.9e-27 125.6 116 57.8
Gohir.A09G057200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 3.9e-27 125.6 178 42.7
TWI73G0220 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 6.6e-27 124.8 184 43.5
RcHm_v2.0_Chr4g0389561 Rosa chinensis HOM05D004338 ORTHO05D005205 1.1e-26 124.0 161 46.6
Gorai.006G070000 Gossypium raimondii HOM05D004338 ORTHO05D005205 1.9e-26 123.2 178 41.6
CsaV3_3G012690 Cucumis sativus L. HOM05D004338 ORTHO05D005205 5.6e-26 121.7 146 49.3
Lalb_Chr02g0150011 Lupinus albus HOM05D004338 ORTHO05D005205 5.6e-26 121.7 126 53.2
Gohir.D09G056400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 7.3e-26 121.3 178 41.0
Aqoxy2G03524 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 9.6e-26 120.9 156 45.5
Phvul.003G138460 Phaseolus vulgaris HOM05D004338 ORTHO05D005205 9.6e-26 120.9 127 52.0
Thhalv10003159m.g Eutrema salsugineum HOM05D004338 ORTHO05D005205 1.2e-25 120.6 77 75.3
PSO210G3643 Papaver somniferum HOM05D004338 ORTHO05D005205 1.6e-25 120.2 126 52.4
PSO238G0023 Papaver somniferum HOM05D004338 ORTHO05D005205 1.6e-25 120.2 123 53.7
Aqoxy102s001 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 4.7e-25 118.6 115 53.0
VMungo0720G2420 Vigna mungo HOM05D004338 ORTHO05D005205 1.4e-24 117.1 114 52.6
RcHm_v2.0_Chr4g0389571 Rosa chinensis HOM05D004338 ORTHO05D005205 1.8e-24 116.7 179 43.0
AUR62006783 Chenopodium quinoa HOM05D004338 ORTHO05D005205 4.0e-24 115.5 111 53.2
CARHR179740 Cardamine hirsuta HOM05D004338 ORTHO05D005205 6.9e-24 114.8 172 40.1
Sp2g08530 Schrenkiella parvula HOM05D004338 ORTHO05D005205 6.9e-24 114.8 175 43.4
AUR62000438 Chenopodium quinoa HOM05D004338 ORTHO05D005205 9.0e-24 114.4 111 52.3
Aa31LG5G3510 Aethionema arabicum HOM05D004338 ORTHO05D005205 1.2e-23 114.0 134 51.5
BolC2t10456H Brassica oleracea HOM05D004338 ORTHO05D005205 1.2e-23 114.0 77 71.4
BraA02t07831Z Brassica rapa HOM05D004338 ORTHO05D005205 1.2e-23 114.0 172 43.0
A02p27940 Brassica napus HOM05D004338 ORTHO05D005205 2.6e-23 112.8 168 42.3
Thecc.04G243900 Theobroma cacao HOM05D004338 ORTHO05D005205 3.4e-23 112.5 157 43.3
Sabra08G0122500 Salix brachista HOM05D004338 ORTHO05D005205 4.4e-23 112.1 143 48.3
arahy.Tifrunner.gnm1.ann1.A4GDND Arachis hypogaea HOM05D004338 ORTHO05D005205 9.9e-23 110.9 134 47.8
BcaC03g16592 Brassica carinata HOM05D004338 ORTHO05D005205 1.3e-22 110.5 77 70.1
C02p44140 Brassica napus HOM05D004338 ORTHO05D005205 1.3e-22 110.5 77 70.1
Gohir.A09G222100 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.3e-22 110.5 75 66.7
EL10Ac4g09514 Beta vulgaris HOM05D004338 ORTHO05D005205 2.2e-22 109.8 111 52.3
arahy.Tifrunner.gnm1.ann1.1TW0Z8 Arachis hypogaea HOM05D004338 ORTHO05D005205 3.8e-22 109.0 134 47.0
BcaB07g30561 Brassica carinata HOM05D004338 ORTHO05D005205 4.9e-22 108.6 112 52.7
Lalb_Chr03g0037911 Lupinus albus HOM05D004338 ORTHO05D005205 4.9e-22 108.6 133 47.4
Sed0024916 Sechium edule HOM05D004338 ORTHO05D005205 4.9e-22 108.6 138 50.0
ATR0665G279 Amborella trichopoda HOM05D004338 ORTHO05D005205 5.4e-21 105.1 71 64.8
AT5G43745 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 7.1e-21 104.8 153 41.2
CDE03G0177 Ceratophyllum demersum HOM05D004338 ORTHO05D005205 9.3e-21 104.4 124 45.2
Carub.0008s0490 Capsella rubella HOM05D004338 ORTHO05D005205 4.6e-20 102.1 77 64.9
Nn1g02552 Nelumbo nucifera HOM05D004338 ORTHO05D005205 4.6e-20 102.1 113 46.9
MBI04_g44053_MAGBIO Magnolia biondii HOM05D004338 ORTHO05D005205 3.9e-19 99.0 64 75.0
AL37U10030 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 5.1e-19 98.6 148 40.5
MELO3C006480.2 Cucumis melo HOM05D004338 ORTHO05D005205 1.6e-17 93.6 154 40.3
Os03g0163100 Oryza sativa ssp. japonica HOM05D004338 ORTHO05D005205 1.6e-17 93.6 75 57.3
Cc00_g20710 Coffea canephora HOM05D004338 ORTHO05D005205 2.1e-17 93.2 64 68.8
Cpa.g.sc58.22 Carica papaya HOM05D004338 ORTHO05D005205 2.4e-16 89.7 59 72.9
BcaC07g41038 Brassica carinata HOM05D004338 ORTHO05D005205 4.0e-16 89.0 162 37.7
C08p40410 Brassica napus HOM05D004338 ORTHO05D005205 4.0e-16 89.0 162 37.7
BcaB08g35114 Brassica carinata HOM05D004338 ORTHO05D005205 5.3e-16 88.6 172 37.2
A09p57320 Brassica napus HOM05D004338 ORTHO05D005205 2.6e-15 86.3 162 37.0
BolC8t51609H Brassica oleracea HOM05D004338 ORTHO05D005205 3.4e-15 85.9 164 37.2
Zm00001eb004780 Zea mays HOM05D004338 ORTHO05D005205 5.8e-15 85.1 122 42.6
AL6G12230 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 1.7e-14 83.6 112 46.4
BraA09t41125Z Brassica rapa HOM05D004338 ORTHO05D005205 2.2e-14 83.2 164 36.6
ClCG05G004690 Citrullus lanatus HOM05D004338 ORTHO05D005205 2.9e-14 82.8 109 42.2
Carub.0006s0174 Capsella rubella HOM05D004338 ORTHO05D005205 8.4e-14 81.3 112 46.4
AT5G02940 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 1.1e-13 80.9 129 41.1
AL8G16460 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 1.6e-12 77.0 88 50.0
CARHR210350 Cardamine hirsuta HOM05D004338 ORTHO05D005205 8.1e-09 64.7 112 38.4
Hund21850 Selenicereus undatus HOM05D004338 ORTHO05D005205 2.2e-06 56.6 114 36.8


User provided reference genes

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