Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 0.0e+00 1580.5 772 100.0
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 0.0e+00 1242.6 772 78.1
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 0.0e+00 1205.7 772 77.2
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 0.0e+00 1149.4 807 71.5
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 0.0e+00 1122.1 770 71.3
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 0.0e+00 1105.5 769 70.4
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 0.0e+00 1095.1 772 69.0
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 0.0e+00 1079.3 770 68.7
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 1.3e-305 1052.7 770 67.4
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 2.8e-303 1045.0 788 65.2
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.1e-302 1043.1 775 65.7
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 8.3e-300 1033.5 774 68.1
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 7.1e-299 1030.4 770 65.6
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 2.3e-297 1025.4 771 64.7
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 5.1e-297 1024.2 772 65.4
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 4.3e-296 1021.1 764 65.2
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.4e-294 1016.1 774 65.2
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 6.8e-294 1013.8 758 65.6
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 4.4e-293 1011.1 773 65.2
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 2.4e-291 1005.4 773 63.6
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 4.8e-287 991.1 773 64.0
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 4.0e-286 988.0 769 63.3
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 9.9e-285 983.4 768 63.2
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 9.9e-285 983.4 768 62.5
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 8.4e-284 980.3 770 64.7
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 9.3e-283 976.9 757 64.6
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 2.1e-282 975.7 795 62.0
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 7.8e-282 973.8 798 61.0
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 3.3e-280 968.4 773 61.3
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 4.3e-280 968.0 769 62.2
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 9.6e-280 966.8 774 62.0
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 1.3e-279 966.5 769 61.8
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 1.6e-279 966.1 775 61.7
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 4.8e-279 964.5 772 62.0
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 6.2e-279 964.1 781 61.3
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 8.1e-279 963.8 800 62.4
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 1.1e-278 963.4 770 62.2
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 4.5e-277 958.0 769 63.5
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 4.9e-276 954.5 770 61.0
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.4e-275 952.2 776 60.7
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 1.6e-274 949.5 771 62.3
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 5.1e-273 944.5 768 61.8
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 8.1e-271 937.2 773 60.7
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.4e-270 936.4 768 62.5
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 4.0e-270 934.9 583 76.5
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.2e-269 933.3 768 62.4
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 1.7e-268 929.5 770 60.1
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.2e-268 929.1 769 61.1
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 3.8e-268 928.3 754 61.8
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 3.2e-267 925.2 768 60.0
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 4.2e-267 924.9 766 59.5
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 7.1e-267 924.1 767 59.8
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 1.2e-266 923.3 781 59.7
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 2.1e-266 922.5 725 62.2
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 8.7e-265 917.1 773 58.5
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 2.1e-263 912.5 776 58.1
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 3.7e-263 911.8 774 59.6
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 9.0e-262 907.1 779 59.4
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 3.4e-261 905.2 721 63.8
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 1.7e-260 902.9 769 58.9
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.1e-259 900.2 772 57.0
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 1.1e-259 900.2 770 58.6
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 5.5e-259 897.9 771 58.2
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.5e-259 897.9 779 58.5
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 7.1e-259 897.5 772 58.3
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 3.5e-258 895.2 770 58.2
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 1.0e-257 893.6 770 58.7
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 2.3e-257 892.5 769 57.9
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 2.5e-256 889.0 770 58.1
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 9.7e-256 887.1 778 56.7
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.4e-254 883.2 769 57.9
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 1.5e-253 879.8 769 57.0
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.6e-253 879.0 697 65.0
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.4e-253 878.6 822 55.6
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 5.9e-253 877.9 771 56.3
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.1e-251 873.6 768 59.1
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 4.6e-250 868.2 768 56.4
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 1.0e-249 867.1 767 57.1
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.4e-249 866.7 758 57.7
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 2.3e-249 865.9 775 56.1
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 1.1e-248 863.6 769 57.0
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.5e-248 862.4 781 56.9
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.4e-243 846.7 799 54.7
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.0e-241 840.5 779 55.8
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 1.0e-241 840.5 656 63.1
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 1.1e-240 837.0 773 55.5
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 1.4e-238 830.1 768 53.9
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.0e-236 823.9 670 60.6
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 8.5e-236 820.8 768 54.0
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 2.1e-234 816.2 769 53.8
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 6.7e-233 811.2 772 54.3
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 8.8e-233 810.8 769 54.4
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 2.6e-232 809.3 772 53.5
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 4.4e-232 808.5 771 53.8
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 2.2e-231 806.2 772 54.0
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 8.2e-231 804.3 772 53.6
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 2.4e-230 802.7 772 53.5
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 1.2e-229 800.4 772 53.2
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 6.1e-226 788.1 772 52.7
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 1.0e-225 787.3 773 52.7
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 1.0e-225 787.3 773 52.7
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 2.3e-225 786.2 772 52.6
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 1.1e-222 777.3 829 49.0
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 1.3e-220 770.4 772 51.8
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 3.8e-220 768.8 675 57.9
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 8.5e-220 767.7 628 61.5
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 9.4e-219 764.2 678 56.3
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 1.2e-218 763.8 771 51.2
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 1.2e-218 763.8 772 51.6
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.8e-217 760.0 671 56.2
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 2.4e-214 749.6 797 48.2
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 6.8e-209 731.5 800 47.6
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 5.4e-206 721.8 893 45.2
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 2.7e-205 719.5 767 48.8
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 3.0e-204 716.1 797 48.7
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 1.3e-196 690.6 630 55.7
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 6.6e-196 688.3 757 47.2
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.3e-188 663.3 524 60.1
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 1.5e-184 650.6 547 57.0
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 6.0e-181 638.6 698 48.6
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 1.5e-179 634.0 722 48.2
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 5.6e-179 632.1 741 44.9
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 6.2e-162 575.5 662 48.3
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.2e-159 567.0 731 44.6
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 5.5e-158 562.4 395 68.6
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.2e-149 534.6 392 64.0
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 3.7e-138 496.5 521 48.9
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.6e-131 473.8 353 66.6
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 5.7e-131 472.6 739 38.0
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 4.4e-123 446.4 349 63.6
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 1.5e-115 421.4 634 38.5
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 3.2e-110 403.7 320 61.9
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.5e-110 402.9 366 57.4
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 1.6e-101 374.8 802 31.2
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 1.1e-94 352.1 361 47.4
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 4.7e-93 346.7 400 47.2
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 6.4e-90 336.3 839 28.6
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 9.5e-86 322.4 470 39.8
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 7.0e-81 306.2 308 49.7
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 6.2e-77 293.1 518 33.2
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 7.5e-75 286.2 299 48.5
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 4.4e-67 260.4 182 75.8
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 3.4e-59 234.2 223 52.9
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 3.5e-56 224.2 207 53.6
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 1.1e-52 212.6 182 61.0
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 3.9e-31 141.0 143 50.3
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 1.0e-26 126.3 135 43.0
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.3e-21 109.4 111 50.5
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 8.2e-21 106.7 117 48.7
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 8.5e-18 96.7 87 59.8
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 4.8e-13 80.9 85 49.4
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.7e-10 72.4 71 43.7
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 8.5e-10 70.1 80 43.8
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 9.4e-09 66.6 57 57.9
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 6.1e-08 63.9 52 51.9
CBR_g17143 Chara braunii HOM05D004502 ORTHO05D005579 1.0e-07 63.2 131 29.0
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 1.5e-06 59.3 55 49.1


User provided reference genes

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