Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 2160.6 1136 100.0
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1877.4 1139 86.0
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1861.7 1141 85.9
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1828.1 1140 84.2
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1796.6 1144 82.4
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1794.2 1144 82.3
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1793.1 1140 82.0
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1788.5 1140 81.2
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1786.2 1140 81.4
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1781.9 1141 80.7
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1763.4 1141 80.3
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1760.0 1144 80.1
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1755.3 1147 80.6
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1755.3 1146 79.6
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1751.1 1151 79.1
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1746.5 1141 79.1
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1745.7 1143 80.0
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1744.9 1147 79.1
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1744.2 1145 79.2
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1742.6 1140 80.0
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1742.2 1141 78.8
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1740.3 1147 78.7
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1737.6 1143 78.7
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1726.8 1142 78.4
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1726.5 1140 78.1
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1725.7 1146 78.4
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1724.1 1140 78.2
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1723.0 1141 79.4
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1720.7 1142 77.8
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1719.5 1140 78.2
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1718.7 1142 77.6
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1718.4 1141 79.1
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1717.6 1141 77.8
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1716.8 1140 78.0
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1716.0 1142 77.3
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1715.3 1141 76.2
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1714.9 1142 77.6
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1714.1 1142 78.7
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1713.4 1145 77.6
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1711.0 1140 77.2
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1709.5 1193 75.2
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1703.0 1139 78.2
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1702.2 1138 76.9
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1700.6 1139 77.1
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1697.9 1145 77.0
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1693.7 1141 76.8
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1691.8 1142 76.4
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1686.8 1143 77.1
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1681.4 1142 77.3
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1672.5 1141 75.7
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1669.8 1138 76.6
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1661.7 1109 77.0
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1660.6 1144 76.1
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1658.3 1141 75.5
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1657.1 1141 74.8
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1626.3 1154 73.7
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1625.1 1140 74.2
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1622.8 1140 74.9
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1622.4 1140 74.0
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1608.6 1144 74.0
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1607.0 1142 72.2
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1598.2 1144 73.7
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1596.3 1139 72.7
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1588.2 1107 74.7
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1587.8 1145 70.7
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1586.6 1151 70.3
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1585.5 1034 78.8
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1584.3 1145 70.8
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1581.2 1138 72.2
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1580.1 1145 70.2
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1579.3 1142 72.6
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1578.5 1145 70.0
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1577.8 1145 70.2
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1577.4 1139 72.0
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1576.6 1154 71.7
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1576.6 1154 71.7
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1573.9 1139 71.7
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1572.4 1145 70.6
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1570.8 1145 70.7
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1569.3 1145 70.6
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1567.4 1145 70.5
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1566.6 1144 69.8
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1563.1 1143 71.4
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1562.0 1021 80.7
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1551.2 1143 69.7
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1546.6 1152 70.4
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1543.1 1144 68.7
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1541.6 1144 68.8
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1541.2 1144 68.8
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1527.7 1144 68.2
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1523.5 1144 67.9
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1511.5 1076 72.7
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1504.6 1082 71.4
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1501.1 1038 73.8
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1485.3 931 82.2
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1473.8 923 80.9
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1472.2 1140 69.7
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1446.0 1160 65.3
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1436.8 1099 68.9
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1411.4 1083 68.1
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1403.3 1128 64.5
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1371.7 1069 65.3
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1338.2 918 75.4
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1336.6 1121 60.6
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1317.0 887 75.2
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1238.0 832 78.4
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1223.8 802 81.2
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1172.5 939 65.4
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1112.4 1074 53.6
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 0.0e+00 1083.6 1092 50.5
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 2.2e-309 1065.8 669 81.0
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 1.3e-301 1040.0 1080 49.4
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 3.3e-297 1025.4 759 69.3
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 1.1e-292 1010.4 1069 49.6
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 4.6e-262 908.7 617 77.6
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 6.8e-250 868.2 938 53.1
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 3.4e-217 759.6 621 63.0
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 4.6e-214 749.2 1129 39.4
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 4.2e-175 619.8 430 79.8
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 5.9e-161 572.8 366 78.4
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 8.3e-155 552.4 442 70.4
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 1.1e-125 455.7 350 65.4
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 1.3e-102 379.0 309 68.0
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 3.7e-102 377.5 1199 28.8
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 3.8e-99 367.5 325 63.1
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 5.1e-96 357.1 361 63.2
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 3.7e-86 324.3 360 49.7
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 1.4e-85 322.4 1146 27.6
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 2.8e-70 271.6 333 48.3
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 1.4e-64 252.7 330 49.7
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 2.0e-52 212.2 155 78.7
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 7.3e-34 150.6 100 81.0
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.6e-33 149.4 639 23.3
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 1.6e-28 132.9 110 72.7
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 6.6e-27 127.5 86 80.2
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 5.6e-26 124.4 86 79.1
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 2.3e-24 119.0 69 76.8
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 6.8e-24 117.5 68 76.5
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 7.6e-07 60.8 45 77.8
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 8.4e-06 57.4 88 53.4


User provided reference genes

Program Settings