Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020495 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 1.1e-130 469.9 238 100.0
CSS0005551 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 7.0e-56 221.5 134 85.1
CSS0048271 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 7.0e-56 221.5 134 85.1
Actinidia26167 Actinidia chinensis HOM05D002530 ORTHO05D002802 4.6e-31 139.0 136 59.6
Dinv19402 Davidia involucrata HOM05D002530 ORTHO05D002802 3.6e-28 129.4 112 67.0
Actinidia06474 Actinidia chinensis HOM05D002530 ORTHO05D002802 4.7e-28 129.0 138 57.2
Rhsim05G0120400 Rhododendron simsii HOM05D002530 ORTHO05D002802 7.6e-26 121.7 127 57.5
vmacro19867 Vaccinium macrocarpon HOM05D002530 ORTHO05D002802 1.1e-19 101.3 124 48.4
PGSC0003DMG400015945 Solanum tuberosum HOM05D002530 ORTHO05D002802 3.1e-19 99.8 128 52.3
HanXRQChr06g0181371 Helianthus annuus HOM05D002530 ORTHO05D002802 6.9e-19 98.6 152 48.0
Lj5A262T66 Lonicera japonica HOM05D002530 ORTHO05D002802 9.0e-19 98.2 138 47.8
TAR628G1217 Trochodendron aralioides HOM05D002530 ORTHO05D002802 2.0e-18 97.1 108 57.4
Nn5g27864 Nelumbo nucifera HOM05D002530 ORTHO05D002802 1.2e-15 87.8 126 46.8
Nitab4.5_0002550g0020 Nicotiana tabacum HOM05D002530 ORTHO05D002802 1.2e-15 87.8 138 47.8
Gohir.A03G215200 Gossypium hirsutum HOM05D002530 ORTHO05D002802 2.7e-15 86.7 105 47.6
Gohir.D02G236700 Gossypium hirsutum HOM05D002530 ORTHO05D002802 4.6e-15 85.9 105 49.5
Gorai.005G265200 Gossypium raimondii HOM05D002530 ORTHO05D002802 6.0e-15 85.5 105 49.5
Lsat_1_v5_gn_7_76001 Lactuca sativa HOM05D002530 ORTHO05D002802 1.8e-14 84.0 140 44.3
Nitab4.5_0000667g0080 Nicotiana tabacum HOM05D002530 ORTHO05D002802 1.8e-14 84.0 141 46.8
Aqoxy6G00138 Aquilegia oxysepala HOM05D002530 ORTHO05D002802 2.3e-14 83.6 142 45.1
Oeu045925.1 Olea europaea HOM05D002530 ORTHO05D002802 6.7e-14 82.0 140 42.9
Duzib132G0844 Durio zibethinus HOM05D002530 ORTHO05D002802 8.7e-14 81.6 118 46.6
COL.COLO4_26748 Corchorus olitorius HOM05D002530 ORTHO05D002802 1.1e-13 81.3 106 47.2
Sopen10g013890 Solanum pennellii HOM05D002530 ORTHO05D002802 1.1e-13 81.3 128 46.1
Haze_10049 Corylus avellana HOM05D002530 ORTHO05D002802 5.6e-13 79.0 173 36.4
Cc02_g23070 Coffea canephora HOM05D002530 ORTHO05D002802 1.3e-12 77.8 115 40.0
ECA236G1516 Erigeron canadensis HOM05D002530 ORTHO05D002802 1.3e-12 77.8 119 46.2
Cpa.g.sc113.52 Carica papaya HOM05D002530 ORTHO05D002802 1.6e-12 77.4 119 42.9
Duzib052G0897 Durio zibethinus HOM05D002530 ORTHO05D002802 2.1e-12 77.0 134 43.3
TWI14G0172 Tripterygium wilfordii HOM05D002530 ORTHO05D002802 2.1e-12 77.0 181 35.9
TWI23G0330 Tripterygium wilfordii HOM05D002530 ORTHO05D002802 3.7e-12 76.3 123 45.5
DCAR_006675 Daucus carota HOM05D002530 ORTHO05D002802 6.2e-12 75.5 107 46.7
PGR142G2696 Punica granatum HOM05D002530 ORTHO05D002802 1.8e-11 73.9 114 43.0
Peaxi162Scf00002g02318 Petunia axillaris HOM05D002530 ORTHO05D002802 2.4e-11 73.6 130 42.3
PSO170G2866 Papaver somniferum HOM05D002530 ORTHO05D002802 5.3e-11 72.4 179 35.8
ClCG11G013290 Citrullus lanatus HOM05D002530 ORTHO05D002802 9.0e-11 71.6 110 44.5
COL.COLO4_17733 Corchorus olitorius HOM05D002530 ORTHO05D002802 1.2e-10 71.2 114 43.0
Thecc.02G019500 Theobroma cacao HOM05D002530 ORTHO05D002802 3.4e-10 69.7 128 40.6
MSTRG.16493 Avicennia marina HOM05D002530 ORTHO05D002802 4.5e-10 69.3 173 33.5
Potri.003G008800 Populus trichocarpa HOM05D002530 ORTHO05D002802 5.8e-10 68.9 115 40.0
RcHm_v2.0_Chr7g0220721 Rosa chinensis HOM05D002530 ORTHO05D002802 5.8e-10 68.9 105 47.6
MELO3C011822.2 Cucumis melo HOM05D002530 ORTHO05D002802 2.9e-09 66.6 103 40.8
Ciclev10000208m.g Citrus clementina HOM05D002530 ORTHO05D002802 4.9e-09 65.9 101 39.6
Manes.07G023400 Manihot esculenta HOM05D002530 ORTHO05D002802 5.5e-08 62.4 172 33.1
Prupe.1G577700 Prunus persica HOM05D002530 ORTHO05D002802 1.2e-07 61.2 108 45.4
CAN.G196.3 Capsicum annuum HOM05D002530 ORTHO05D002802 1.6e-07 60.8 174 33.9
Potri.004G223400 Populus trichocarpa HOM05D002530 ORTHO05D002802 2.7e-07 60.1 129 34.1
CsaV3_5G029810 Cucumis sativus L. HOM05D002530 ORTHO05D002802 3.5e-07 59.7 110 38.2
Migut.B00779 Erythranthe guttata HOM05D002530 ORTHO05D002802 7.9e-07 58.5 152 34.2
Sed0015896 Sechium edule HOM05D002530 ORTHO05D002802 7.9e-07 58.5 140 34.3
MD08G1240900 Malus domestica HOM05D002530 ORTHO05D002802 6.7e-06 55.5 173 32.4


User provided reference genes

Program Settings