Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020488 Camellia sinensis var. sinensis HOM05D007543 ORTHO05D009555 4.6e-174 614.4 293 100.0
Actinidia35927 Actinidia chinensis HOM05D007543 ORTHO05D009555 6.5e-104 381.3 268 70.1
Hma1.2p1_1076F.1_g254630 Hydrangea macrophylla HOM05D007543 ORTHO05D009555 4.2e-95 352.1 216 76.4
Thecc.04G215800 Theobroma cacao HOM05D007543 ORTHO05D009555 1.6e-94 350.1 199 78.9
COL.COLO4_05738 Corchorus olitorius HOM05D007543 ORTHO05D009555 8.0e-94 347.8 219 73.1
Duzib151G0611 Durio zibethinus HOM05D007543 ORTHO05D009555 1.4e-93 347.1 216 72.2
CiPaw.01G206300 Carya illinoinensis HOM05D007543 ORTHO05D009555 5.2e-93 345.1 247 69.2
Atru.chr4.1820 Acer truncatum HOM05D007543 ORTHO05D009555 6.8e-93 344.7 212 75.0
TAR362G0720 Trochodendron aralioides HOM05D007543 ORTHO05D009555 2.0e-92 343.2 276 63.8
Manes.15G048300 Manihot esculenta HOM05D007543 ORTHO05D009555 3.4e-92 342.4 215 72.6
Nn1g03077 Nelumbo nucifera HOM05D007543 ORTHO05D009555 4.4e-92 342.0 259 63.7
Rhsim09G0045000 Rhododendron simsii HOM05D007543 ORTHO05D009555 3.7e-91 339.0 238 68.5
Potri.010G060800 Populus trichocarpa HOM05D007543 ORTHO05D009555 4.9e-91 338.6 238 67.6
QL06p022584 Quercus lobata HOM05D007543 ORTHO05D009555 6.3e-91 338.2 245 66.9
Ciclev10005680m.g Citrus clementina HOM05D007543 ORTHO05D009555 2.4e-90 336.3 217 71.4
CiPaw.02G128000 Carya illinoinensis HOM05D007543 ORTHO05D009555 1.0e-88 330.9 239 69.0
Ciclev10005675m.g Citrus clementina HOM05D007543 ORTHO05D009555 6.6e-88 328.2 215 71.6
Potri.008G175200 Populus trichocarpa HOM05D007543 ORTHO05D009555 9.5e-87 324.3 254 63.8
TWI53G0267 Tripterygium wilfordii HOM05D007543 ORTHO05D009555 4.7e-86 322.0 201 74.6
Actinidia25090 Actinidia chinensis HOM05D007543 ORTHO05D009555 4.4e-84 315.5 272 60.7
ClCG05G003720 Citrullus lanatus HOM05D007543 ORTHO05D009555 3.2e-82 309.3 235 64.3
DCAR_002284 Daucus carota HOM05D007543 ORTHO05D009555 3.2e-82 309.3 241 63.1
ATR0787G197 Amborella trichopoda HOM05D007543 ORTHO05D009555 3.5e-81 305.8 194 70.6
CsaV3_3G011440 Cucumis sativus L. HOM05D007543 ORTHO05D009555 1.3e-80 303.9 243 61.7
SEGI_36435 Sequoiadendron giganteum HOM05D007543 ORTHO05D009555 8.6e-80 301.2 197 70.1
HanXRQChr01g0022581 Helianthus annuus HOM05D007543 ORTHO05D009555 1.9e-79 300.1 216 64.4
Sed0003983 Sechium edule HOM05D007543 ORTHO05D009555 1.9e-79 300.1 213 67.6
Nitab4.5_0000451g0150 Nicotiana tabacum HOM05D007543 ORTHO05D009555 2.1e-78 296.6 227 62.6
vmacro00522 Vaccinium macrocarpon HOM05D007543 ORTHO05D009555 2.3e-77 293.1 327 51.7
Nitab4.5_0003136g0030 Nicotiana tabacum HOM05D007543 ORTHO05D009555 2.0e-76 290.0 255 58.0
PSO764G0201 Papaver somniferum HOM05D007543 ORTHO05D009555 3.4e-76 289.3 270 54.4
Lsat_1_v5_gn_2_41901 Lactuca sativa HOM05D007543 ORTHO05D009555 3.7e-75 285.8 256 55.5
EL10Ac3g06745 Beta vulgaris HOM05D007543 ORTHO05D009555 4.9e-75 285.4 193 64.2
Lsat_1_v5_gn_1_76300 Lactuca sativa HOM05D007543 ORTHO05D009555 6.4e-75 285.0 190 67.4
Lsat_1_v5_gn_0_4520 Lactuca sativa HOM05D007543 ORTHO05D009555 1.1e-74 284.3 198 64.6
PGSC0003DMG400011574 Solanum tuberosum HOM05D007543 ORTHO05D009555 5.4e-74 282.0 232 61.2
CAN.G1588.1 Capsicum annuum HOM05D007543 ORTHO05D009555 2.1e-73 280.0 244 56.6
Sc19g0005790 Simmondsia chinensis HOM05D007543 ORTHO05D009555 2.7e-73 279.6 229 57.6
Os07g0170800 Oryza sativa ssp. japonica HOM05D007543 ORTHO05D009555 6.0e-73 278.5 197 65.0
Zm00001eb222310 Zea mays HOM05D007543 ORTHO05D009555 5.1e-72 275.4 197 62.4
Lsat_1_v5_gn_1_76260 Lactuca sativa HOM05D007543 ORTHO05D009555 1.6e-70 270.4 263 51.3
Sabra08G0133600 Salix brachista HOM05D007543 ORTHO05D009555 1.6e-70 270.4 213 62.4
Haze_11534 Corylus avellana HOM05D007543 ORTHO05D009555 8.1e-70 268.1 258 55.8
Lsat_1_v5_gn_0_4560 Lactuca sativa HOM05D007543 ORTHO05D009555 8.9e-69 264.6 192 63.0
Migut.G00602 Erythranthe guttata HOM05D007543 ORTHO05D009555 3.2e-66 256.1 175 61.1
Lsat_1_v5_gn_1_76220 Lactuca sativa HOM05D007543 ORTHO05D009555 6.2e-62 241.9 254 49.6
Cfa014866 Carpinus fangiana HOM05D007543 ORTHO05D009555 1.1e-61 241.1 122 83.6
MELO3C006351.2 Cucumis melo HOM05D007543 ORTHO05D009555 4.4e-60 235.7 235 52.8
CANSAT78G0099 Cannabis sativa HOM05D007543 ORTHO05D009555 1.0e-56 224.6 126 73.0
AUR62035334 Chenopodium quinoa HOM05D007543 ORTHO05D009555 3.3e-55 219.5 124 71.0
AUR62035905 Chenopodium quinoa HOM05D007543 ORTHO05D009555 3.3e-55 219.5 124 71.0
GSVIVG01029024001 Vitis vinifera HOM05D007543 ORTHO05D009555 5.6e-55 218.8 124 79.8
Eucgr.H02864 Eucalyptus grandis HOM05D007543 ORTHO05D009555 2.8e-54 216.5 130 76.9
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 1.4e-50 204.1 228 43.0
PSO832G0138 Papaver somniferum HOM05D007543 ORTHO05D009555 1.4e-50 204.1 221 49.3
FAN07G2337 Fragaria x ananassa HOM05D007543 ORTHO05D009555 3.2e-50 203.0 126 66.7
Lj6A641T47 Lonicera japonica HOM05D007543 ORTHO05D009555 4.2e-50 202.6 123 69.1
MBI10_g16799_MAGBIO Magnolia biondii HOM05D007543 ORTHO05D009555 1.6e-49 200.7 112 75.0
Cc03_g07030 Coffea canephora HOM05D007543 ORTHO05D009555 1.3e-48 197.6 123 65.0
RcHm_v2.0_Chr4g0396531 Rosa chinensis HOM05D007543 ORTHO05D009555 8.7e-48 194.9 177 56.5
ECA248G0596 Erigeron canadensis HOM05D007543 ORTHO05D009555 1.5e-47 194.1 103 76.7
SMO142G0023 Selaginella moellendorffii HOM05D007543 ORTHO05D009555 1.9e-47 193.7 235 43.8
HanXRQChr01g0022591 Helianthus annuus HOM05D007543 ORTHO05D009555 1.3e-46 191.0 214 47.2
MD13G1227800 Malus domestica HOM05D007543 ORTHO05D009555 4.8e-46 189.1 115 72.2
HanXRQChr06g0183251 Helianthus annuus HOM05D007543 ORTHO05D009555 8.4e-43 178.3 107 70.1
SMO358G0284 Selaginella moellendorffii HOM05D007543 ORTHO05D009555 1.9e-42 177.2 165 50.3
Dinv29773 Davidia involucrata HOM05D007543 ORTHO05D009555 3.9e-40 169.5 86 83.7
SalBow2G1589 Salvia bowleyana HOM05D007543 ORTHO05D009555 1.3e-38 164.5 122 59.0
Peaxi162Scf00047g00165 Petunia axillaris HOM05D007543 ORTHO05D009555 1.1e-37 161.4 98 70.4
unitig_0.g2250 Utricularia gibba HOM05D007543 ORTHO05D009555 2.0e-36 157.1 106 59.4
Solyc09g091160.1 Solanum lycopersicum HOM05D007543 ORTHO05D009555 4.9e-35 152.5 98 67.3
AagrBONN_evm.TU.Sc2ySwM_117.1924 Anthoceros agrestis HOM05D007543 ORTHO05D009555 1.9e-34 150.6 227 37.0
HanXRQChr06g0183241 Helianthus annuus HOM05D007543 ORTHO05D009555 2.1e-33 147.1 125 59.2
Mapoly0044s0133 Marchantia polymorpha HOM05D007543 ORTHO05D009555 6.0e-33 145.6 180 40.0
AagrBONN_evm.TU.Sc2ySwM_368.1268 Anthoceros agrestis HOM05D007543 ORTHO05D009555 1.1e-31 141.4 187 38.5
MD13G1227700 Malus domestica HOM05D007543 ORTHO05D009555 4.0e-29 132.9 150 51.3
Dinv29774 Davidia involucrata HOM05D007543 ORTHO05D009555 1.4e-26 124.4 151 55.0
SMO356G0252 Selaginella moellendorffii HOM05D007543 ORTHO05D009555 3.2e-26 123.2 192 34.4
FAN11G1069 Fragaria x ananassa HOM05D007543 ORTHO05D009555 8.7e-24 115.2 198 35.4
Hund24855 Selenicereus undatus HOM05D007543 ORTHO05D009555 2.5e-23 113.6 73 65.8
SEGI_36569 Sequoiadendron giganteum HOM05D007543 ORTHO05D009555 4.3e-23 112.8 179 34.6
Pp3c4_1040 Physcomitrium patens HOM05D007543 ORTHO05D009555 1.1e-21 108.2 187 31.0
AagrBONN_evm.TU.Sc2ySwM_344.5003 Anthoceros agrestis HOM05D007543 ORTHO05D009555 2.2e-19 100.5 86 52.3
Ciclev10006635m.g Citrus clementina HOM05D007543 ORTHO05D009555 3.7e-14 83.2 127 40.2
Cc03_g07020 Coffea canephora HOM05D007543 ORTHO05D009555 1.4e-13 81.3 63 65.1
Cre10.g418851 Chlamydomonas reinhardtii HOM05D007543 ORTHO05D009555 6.9e-13 79.0 236 27.5
FAN12G3210 Fragaria x ananassa HOM05D007543 ORTHO05D009555 2.8e-06 57.0 37 67.6


User provided reference genes

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