Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 6.8e-226 786.9 383 100.0
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 5.6e-164 581.3 389 76.6
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 1.9e-151 539.7 387 71.8
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 2.9e-144 515.8 411 66.9
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 3.0e-125 452.6 392 60.7
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 3.1e-122 442.6 416 57.0
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 1.6e-121 440.3 415 56.4
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 4.5e-121 438.7 389 58.9
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 1.0e-120 437.6 404 57.7
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 3.2e-119 432.6 382 56.8
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 2.1e-118 429.9 395 55.2
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 3.6e-118 429.1 374 58.8
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 2.6e-116 422.9 375 57.9
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 8.2e-115 417.9 401 54.4
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 1.4e-114 417.2 403 53.3
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 1.6e-113 413.7 380 57.9
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 5.9e-113 411.8 394 54.6
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 1.1e-111 407.5 374 55.1
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.9e-111 406.8 374 54.8
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.2e-110 404.1 378 54.2
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.1e-110 403.3 378 54.0
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 4.7e-110 402.1 417 52.3
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.3e-109 399.8 378 54.0
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 5.2e-109 398.7 406 52.5
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 8.8e-109 397.9 396 52.8
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 3.4e-108 396.0 390 52.1
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 4.4e-108 395.6 400 51.5
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 4.4e-108 395.6 400 51.5
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 5.7e-108 395.2 406 51.5
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 1.3e-107 394.0 417 52.5
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 1.3e-107 394.0 372 55.1
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 3.7e-107 392.5 388 53.4
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.8e-107 392.1 367 54.2
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 1.4e-106 390.6 406 52.0
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 4.1e-106 389.0 370 54.9
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 7.0e-106 388.3 374 53.2
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 7.0e-106 388.3 374 53.2
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 1.6e-105 387.1 370 56.2
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 4.5e-105 385.6 378 53.7
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 7.7e-105 384.8 376 53.2
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 1.0e-104 384.4 374 53.7
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 1.3e-104 384.0 385 53.0
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 1.7e-104 383.6 387 53.5
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 2.2e-104 383.3 376 54.8
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 6.5e-104 381.7 385 52.7
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 1.1e-103 380.9 385 54.0
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 1.9e-103 380.2 406 52.2
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 2.5e-103 379.8 411 50.9
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 2.5e-103 379.8 385 52.5
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 3.2e-103 379.4 370 53.0
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 5.5e-103 378.6 410 51.2
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 5.5e-103 378.6 375 52.3
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 7.2e-103 378.3 364 52.7
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.6e-102 377.1 382 53.1
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 3.6e-102 375.9 380 52.6
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 3.6e-102 375.9 390 53.3
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 4.7e-102 375.6 384 51.0
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 6.1e-102 375.2 379 52.0
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 8.0e-102 374.8 373 53.9
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 3.0e-101 372.9 383 52.7
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 3.0e-101 372.9 288 67.7
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 5.2e-101 372.1 378 50.8
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 4.4e-100 369.0 360 52.8
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 5.7e-100 368.6 371 52.8
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 9.8e-100 367.9 376 53.7
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 9.8e-100 367.9 382 52.4
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 9.8e-100 367.9 392 52.6
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 2.8e-99 366.3 363 53.4
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 6.3e-99 365.2 340 54.7
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 6.3e-99 365.2 382 51.3
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 8.3e-99 364.8 425 47.5
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.4e-98 363.2 340 55.9
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 3.1e-98 362.8 377 53.1
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 4.5e-97 359.0 355 51.5
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 2.9e-96 356.3 403 49.9
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 1.1e-95 354.4 337 54.3
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 5.6e-95 352.1 380 49.2
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 3.6e-94 349.4 375 49.9
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 6.1e-94 348.6 349 51.9
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 4.0e-93 345.9 379 47.8
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 1.5e-92 344.0 351 51.3
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 3.2e-90 336.3 384 48.2
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 3.9e-88 329.3 353 51.8
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 6.2e-86 322.0 365 47.1
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 1.0e-85 321.2 337 51.3
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 4.4e-84 315.8 304 53.9
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 5.8e-84 315.5 355 47.9
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 5.4e-82 308.9 406 43.6
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 1.3e-80 304.3 366 45.9
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 8.9e-77 291.6 368 45.7
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 2.0e-76 290.4 382 46.6
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 4.4e-76 289.3 355 47.0
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 7.1e-74 282.0 352 46.9
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 9.2e-74 281.6 384 44.3
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 1.2e-73 281.2 354 46.6
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 4.6e-73 279.3 333 47.1
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 1.0e-72 278.1 386 43.0
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 1.3e-72 277.7 353 45.9
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 1.3e-72 277.7 353 45.9
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 2.3e-72 276.9 349 46.7
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 7.6e-68 261.9 466 36.5
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.6e-62 244.2 435 34.3
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 8.1e-62 241.9 345 42.9
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 8.1e-62 241.9 340 42.4
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 5.2e-61 239.2 258 52.3
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.5e-60 237.7 438 34.9
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 2.9e-59 233.4 323 42.7
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.5e-57 226.5 310 43.5
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 7.8e-57 225.3 271 48.3
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 1.7e-56 224.2 269 47.6
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 2.8e-54 216.9 282 44.3
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.8e-54 216.9 402 33.3
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 8.1e-54 215.3 443 31.8
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 3.2e-50 203.4 539 31.4
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 6.0e-49 199.1 315 40.0
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 3.3e-47 193.4 577 26.5
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 2.4e-45 187.2 131 65.6
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 1.9e-31 141.0 148 49.3
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.5e-31 140.6 120 54.2
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 1.3e-30 138.3 192 45.3
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 2.1e-30 137.5 101 66.3
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 4.8e-30 136.3 98 65.3
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.6e-28 130.6 231 36.4
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 7.6e-28 129.0 151 43.0
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 3.8e-27 126.7 134 46.3
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.5e-26 124.0 131 45.0
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 2.5e-23 114.0 271 31.4
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 1.9e-18 97.8 187 32.1
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 1.2e-17 95.1 96 57.3
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 6.3e-14 82.8 231 29.0
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 1.1e-13 82.0 58 69.0
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 1.4e-10 71.6 58 58.6
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 2.7e-09 67.4 52 53.8
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 7.9e-09 65.9 144 29.2


User provided reference genes

Program Settings