Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020475 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.7e-296 1021.9 524 100.0
GSVIVG01034665001 Vitis vinifera HOM05D005033 ORTHO05D007005 1.1e-239 833.2 538 80.3
CSS0041797 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 9.8e-236 820.1 540 83.0
Actinidia22298 Actinidia chinensis HOM05D005033 ORTHO05D007005 6.4e-235 817.4 536 79.3
Hma1.2p1_0446F.1_g154670 Hydrangea macrophylla HOM05D005033 ORTHO05D007005 2.1e-230 802.4 536 78.2
Duzib130G0002 Durio zibethinus HOM05D005033 ORTHO05D007005 3.5e-225 785.0 523 77.1
Duzib138G0857 Durio zibethinus HOM05D005033 ORTHO05D007005 2.3e-224 782.3 523 76.7
Atru.chr13.2088 Acer truncatum HOM05D005033 ORTHO05D007005 6.6e-224 780.8 529 74.9
Eucgr.J01030 Eucalyptus grandis HOM05D005033 ORTHO05D007005 1.1e-223 780.0 536 75.4
Glyma.20G190200 Glycine max HOM05D005033 ORTHO05D007005 2.4e-221 772.3 538 73.4
Glyma.10G200300 Glycine max HOM05D005033 ORTHO05D007005 1.2e-220 770.0 538 73.0
TAR633G0665 Trochodendron aralioides HOM05D005033 ORTHO05D007005 9.9e-220 766.9 536 73.9
ClCG09G006560 Citrullus lanatus HOM05D005033 ORTHO05D007005 1.3e-219 766.5 527 73.4
Gohir.D07G190300 Gossypium hirsutum HOM05D005033 ORTHO05D007005 1.7e-219 766.1 515 76.3
VMungo0720G2563 Vigna mungo HOM05D005033 ORTHO05D007005 1.7e-219 766.1 538 73.0
PGR083G2464 Punica granatum HOM05D005033 ORTHO05D007005 2.2e-219 765.8 517 75.4
Peaxi162Scf00450g00616 Petunia axillaris HOM05D005033 ORTHO05D007005 8.4e-219 763.8 514 76.8
Rhsim02G0215300 Rhododendron simsii HOM05D005033 ORTHO05D007005 9.3e-218 760.4 573 72.3
CsaV3_2G032850 Cucumis sativus L. HOM05D005033 ORTHO05D007005 1.2e-217 760.0 536 72.6
Nitab4.5_0004816g0020 Nicotiana tabacum HOM05D005033 ORTHO05D007005 2.1e-217 759.2 531 75.3
Sabra10G0180300 Salix brachista HOM05D005033 ORTHO05D007005 2.1e-217 759.2 542 72.0
Potri.008G029100 Populus trichocarpa HOM05D005033 ORTHO05D007005 6.0e-217 757.7 538 72.3
MELO3C019859.2 Cucumis melo HOM05D005033 ORTHO05D007005 1.3e-216 756.5 527 72.9
Gorai.001G212400 Gossypium raimondii HOM05D005033 ORTHO05D007005 1.3e-216 756.5 514 75.7
Sopen05g004030 Solanum pennellii HOM05D005033 ORTHO05D007005 1.3e-216 756.5 528 73.9
Solyc05g008190.3 Solanum lycopersicum HOM05D005033 ORTHO05D007005 5.1e-216 754.6 528 73.5
Cc02_g10440 Coffea canephora HOM05D005033 ORTHO05D007005 6.6e-216 754.2 514 75.1
Gohir.A07G183600 Gossypium hirsutum HOM05D005033 ORTHO05D007005 6.6e-216 754.2 513 75.8
Lalb_Chr21g0313111 Lupinus albus HOM05D005033 ORTHO05D007005 1.5e-215 753.1 538 71.7
PGSC0003DMG400030544 Solanum tuberosum HOM05D005033 ORTHO05D007005 6.2e-214 747.7 514 74.7
CAN.G1334.3 Capsicum annuum HOM05D005033 ORTHO05D007005 3.1e-213 745.3 538 71.7
TWI34G0149 Tripterygium wilfordii HOM05D005033 ORTHO05D007005 3.1e-213 745.3 522 75.1
Lj5g0024582 Lotus japonicus HOM05D005033 ORTHO05D007005 5.3e-213 744.6 524 73.9
Nn8g40819 Nelumbo nucifera HOM05D005033 ORTHO05D007005 5.3e-213 744.6 535 71.8
Ciclev10003719m.g Citrus clementina HOM05D005033 ORTHO05D007005 2.0e-212 742.7 538 72.7
Prupe.2G096600 Prunus persica HOM05D005033 ORTHO05D007005 5.8e-212 741.1 541 72.5
MSTRG.405 Avicennia marina HOM05D005033 ORTHO05D007005 1.3e-211 740.0 520 73.7
Potri.010G232500 Populus trichocarpa HOM05D005033 ORTHO05D007005 1.3e-211 740.0 538 70.8
Phvul.007G144800 Phaseolus vulgaris HOM05D005033 ORTHO05D007005 2.2e-211 739.2 538 70.4
Lj4A548T13 Lonicera japonica HOM05D005033 ORTHO05D007005 3.8e-211 738.4 521 73.1
MD07G1075700 Malus domestica HOM05D005033 ORTHO05D007005 1.9e-210 736.1 541 71.2
Thecc.01G170700 Theobroma cacao HOM05D005033 ORTHO05D007005 4.2e-210 734.9 520 73.7
DCAR_019312 Daucus carota HOM05D005033 ORTHO05D007005 1.6e-209 733.0 538 69.5
Lj4A576G37 Lonicera japonica HOM05D005033 ORTHO05D007005 1.3e-208 729.9 521 72.7
Sc09g0005810 Simmondsia chinensis HOM05D005033 ORTHO05D007005 1.3e-208 729.9 528 70.5
CANSAT11G2161 Cannabis sativa HOM05D005033 ORTHO05D007005 1.9e-207 726.1 539 70.5
AUR62018476 Chenopodium quinoa HOM05D005033 ORTHO05D007005 3.3e-207 725.3 534 69.9
Ca_10465_v3 Cicer arietinum L. HOM05D005033 ORTHO05D007005 2.4e-205 719.2 533 70.2
Hund09612 Selenicereus undatus HOM05D005033 ORTHO05D007005 2.0e-204 716.1 536 69.8
arahy.Tifrunner.gnm1.ann1.BLA122 Arachis hypogaea HOM05D005033 ORTHO05D007005 9.9e-204 713.8 533 68.1
Sed0023623 Sechium edule HOM05D005033 ORTHO05D007005 1.4e-202 709.9 533 69.4
vmacro04570 Vaccinium macrocarpon HOM05D005033 ORTHO05D007005 1.4e-202 709.9 587 67.6
Medtr1g090877 Medicago truncatula HOM05D005033 ORTHO05D007005 2.5e-199 699.1 532 68.0
Aqoxy7G00894 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 5.6e-199 698.0 530 67.5
Manes.04G062300 Manihot esculenta HOM05D005033 ORTHO05D007005 2.8e-198 695.7 538 66.9
EL10Ac3g05920 Beta vulgaris HOM05D005033 ORTHO05D007005 3.7e-198 695.3 515 68.7
Aqoxy6G00730 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 8.1e-198 694.1 520 69.0
Psat6g174240 Pisum sativum HOM05D005033 ORTHO05D007005 2.4e-197 692.6 538 66.5
CSS0012290 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 6.9e-197 691.0 512 76.2
QL05p060417 Quercus lobata HOM05D005033 ORTHO05D007005 9.0e-197 690.6 522 69.9
MD13G1165600 Malus domestica HOM05D005033 ORTHO05D007005 2.0e-196 689.5 544 68.4
COL.COLO4_07176 Corchorus olitorius HOM05D005033 ORTHO05D007005 3.4e-196 688.7 573 64.7
Ah.01g017010 Amaranthus hybridus HOM05D005033 ORTHO05D007005 5.8e-196 688.0 523 67.7
arahy.Tifrunner.gnm1.ann1.FAT33H Arachis hypogaea HOM05D005033 ORTHO05D007005 1.3e-195 686.8 586 61.8
ECA236G1450 Erigeron canadensis HOM05D005033 ORTHO05D007005 1.3e-195 686.8 517 69.1
CARHR085050 Cardamine hirsuta HOM05D005033 ORTHO05D007005 2.9e-195 685.6 543 67.6
Sp3g08810 Schrenkiella parvula HOM05D005033 ORTHO05D007005 2.9e-195 685.6 534 67.2
CiPaw.12G008100 Carya illinoinensis HOM05D005033 ORTHO05D007005 1.4e-194 683.3 520 69.2
Sed0004918 Sechium edule HOM05D005033 ORTHO05D007005 1.9e-194 682.9 527 67.0
BolC1t05387H Brassica oleracea HOM05D005033 ORTHO05D007005 2.5e-194 682.6 532 67.3
BcaNung06294 Brassica carinata HOM05D005033 ORTHO05D007005 3.2e-194 682.2 532 67.1
Nitab4.5_0006512g0050 Nicotiana tabacum HOM05D005033 ORTHO05D007005 7.9e-193 677.6 531 69.3
FAN10G0702 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.0e-192 677.2 540 66.1
FAN03G1010 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.8e-192 676.4 540 66.1
BraA05t22654Z Brassica rapa HOM05D005033 ORTHO05D007005 2.3e-192 676.0 532 66.4
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 5.1e-192 674.9 536 66.6
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 5.1e-192 674.9 535 65.4
Migut.F01668 Erythranthe guttata HOM05D005033 ORTHO05D007005 1.1e-191 673.7 536 65.9
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 4.3e-191 671.8 535 65.8
RcHm_v2.0_Chr1g0336741 Rosa chinensis HOM05D005033 ORTHO05D007005 9.6e-191 670.6 538 65.8
BcaB04g21233 Brassica carinata HOM05D005033 ORTHO05D007005 1.3e-190 670.2 532 66.4
BcaNung04933 Brassica carinata HOM05D005033 ORTHO05D007005 1.3e-190 670.2 533 66.4
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 1.3e-190 670.2 528 65.7
HanXRQChr04g0126221 Helianthus annuus HOM05D005033 ORTHO05D007005 2.4e-189 666.0 520 65.8
TPR.G37792 Trifolium pratense HOM05D005033 ORTHO05D007005 9.0e-189 664.1 533 65.1
CDE08G1035 Ceratophyllum demersum HOM05D005033 ORTHO05D007005 1.2e-188 663.7 516 67.2
BraA01t04244Z Brassica rapa HOM05D005033 ORTHO05D007005 3.4e-188 662.1 488 69.3
Haze_05486 Corylus avellana HOM05D005033 ORTHO05D007005 1.3e-187 660.2 616 59.4
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 1.3e-187 660.2 520 65.8
AL3G21930 Arabidopsis lyrata HOM05D005033 ORTHO05D007005 5.0e-187 658.3 534 65.9
THA.LOC104826968 Tarenaya hassleriana HOM05D005033 ORTHO05D007005 5.5e-186 654.8 450 71.3
Actinidia13190 Actinidia chinensis HOM05D005033 ORTHO05D007005 1.2e-185 653.7 434 77.9
Carub.0003s0977 Capsella rubella HOM05D005033 ORTHO05D007005 2.1e-185 652.9 539 64.9
AT3G10530 Arabidopsis thaliana HOM05D005033 ORTHO05D007005 2.7e-185 652.5 534 65.4
Dinv31275 Davidia involucrata HOM05D005033 ORTHO05D007005 7.9e-185 651.0 468 72.6
HPP92_022999 Vanilla planifolia HOM05D005033 ORTHO05D007005 1.0e-184 650.6 519 64.7
Thhalv10020478m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 1.3e-182 643.7 535 62.8
FvH4_7g06900 Fragaria vesca HOM05D005033 ORTHO05D007005 8.2e-182 641.0 540 63.5
Oeu027297.1 Olea europaea HOM05D005033 ORTHO05D007005 3.4e-180 635.6 569 61.2
unitig_899.g15062 Utricularia gibba HOM05D005033 ORTHO05D007005 2.9e-179 632.5 538 63.2
FAN01G1898 Fragaria x ananassa HOM05D005033 ORTHO05D007005 8.2e-174 614.4 528 62.9
FAN06G3772 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.4e-173 613.6 540 62.0
PSO063G4428 Papaver somniferum HOM05D005033 ORTHO05D007005 1.8e-173 613.2 508 63.6
PSO339G5947 Papaver somniferum HOM05D005033 ORTHO05D007005 1.7e-171 606.7 506 63.8
Nitab4.5_0004816g0100 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.4e-170 603.6 458 69.2
Lsat_1_v5_gn_5_142541 Lactuca sativa HOM05D005033 ORTHO05D007005 4.2e-170 602.1 495 63.2
Aa31LG4G2160 Aethionema arabicum HOM05D005033 ORTHO05D007005 6.1e-169 598.2 535 59.6
ATR0598G298 Amborella trichopoda HOM05D005033 ORTHO05D007005 3.3e-167 592.4 513 61.4
Zm00001eb272000 Zea mays HOM05D005033 ORTHO05D007005 3.1e-165 585.9 509 59.9
SHI01926 Sapria himalayana HOM05D005033 ORTHO05D007005 1.6e-164 583.6 574 56.6
Os01g0183100 Oryza sativa ssp. japonica HOM05D005033 ORTHO05D007005 5.0e-155 552.0 525 56.2
Sc12g0008670 Simmondsia chinensis HOM05D005033 ORTHO05D007005 8.5e-155 551.2 409 69.7
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 1.5e-143 513.8 480 58.5
PSO591G0084 Papaver somniferum HOM05D005033 ORTHO05D007005 2.4e-141 506.5 433 62.1
Ciclev10003777m.g Citrus clementina HOM05D005033 ORTHO05D007005 8.6e-139 498.0 493 58.6
Prupe.1G365200 Prunus persica HOM05D005033 ORTHO05D007005 1.7e-123 447.2 434 60.1
Mapoly0082s0024 Marchantia polymorpha HOM05D005033 ORTHO05D007005 3.9e-123 446.0 537 46.2
AagrBONN_evm.TU.Sc2ySwM_362.274 Anthoceros agrestis HOM05D005033 ORTHO05D007005 7.3e-122 441.8 478 50.6
SMO367G1111 Selaginella moellendorffii HOM05D005033 ORTHO05D007005 2.1e-121 440.3 518 47.9
Pp3c1_3590 Physcomitrium patens HOM05D005033 ORTHO05D007005 4.1e-117 426.0 497 46.1
AUR62020948 Chenopodium quinoa HOM05D005033 ORTHO05D007005 3.4e-111 406.4 311 68.8
BcaC05g29452 Brassica carinata HOM05D005033 ORTHO05D007005 6.6e-107 392.1 329 63.8
Cre12.g502800 Chlamydomonas reinhardtii HOM05D005033 ORTHO05D007005 2.1e-105 387.1 521 41.5
CBR_g12704 Chara braunii HOM05D005033 ORTHO05D007005 3.6e-105 386.3 470 45.3
Cpa.g.sc116.23 Carica papaya HOM05D005033 ORTHO05D007005 5.2e-104 382.5 520 46.9
MCO04G094 Micromonas commoda HOM05D005033 ORTHO05D007005 7.6e-103 378.6 507 41.2
Nn2g13935 Nelumbo nucifera HOM05D005033 ORTHO05D007005 7.3e-98 362.1 260 72.7
PRCOL_00001195 Prasinoderma coloniale HOM05D005033 ORTHO05D007005 2.4e-96 357.1 519 40.3
Peaxi162Scf00159g00012 Petunia axillaris HOM05D005033 ORTHO05D007005 9.3e-93 345.1 289 64.7
SEGI_20556 Sequoiadendron giganteum HOM05D005033 ORTHO05D007005 1.2e-87 328.2 358 50.3
Thhalv10016037m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 1.6e-84 317.8 351 53.0
Cfa025315 Carpinus fangiana HOM05D005033 ORTHO05D007005 1.0e-62 245.4 523 33.5
Actinidia36730 Actinidia chinensis HOM05D005033 ORTHO05D007005 3.2e-45 187.2 105 86.7
Peaxi162Scf00159g00111 Petunia axillaris HOM05D005033 ORTHO05D007005 4.0e-27 127.1 75 85.3
RcHm_v2.0_Chr1g0336811 Rosa chinensis HOM05D005033 ORTHO05D007005 3.8e-22 110.5 113 52.2
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 2.1e-20 104.8 145 47.6
MD05G1224900 Malus domestica HOM05D005033 ORTHO05D007005 4.0e-19 100.5 70 74.3
MD09G1267900 Malus domestica HOM05D005033 ORTHO05D007005 1.7e-17 95.1 56 85.7
RcHm_v2.0_Chr1g0336801 Rosa chinensis HOM05D005033 ORTHO05D007005 1.4e-16 92.0 65 64.6
Aa31sc66G30 Aethionema arabicum HOM05D005033 ORTHO05D007005 2.4e-16 91.3 126 46.8
MD08G1003300 Malus domestica HOM05D005033 ORTHO05D036613 5.0e-14 83.6 63 58.7
arahy.Tifrunner.gnm1.ann1.5U8ZY7 Arachis hypogaea HOM05D005033 ORTHO05D083851 3.7e-09 67.4 57 57.9
arahy.Tifrunner.gnm1.ann1.R7HTY3 Arachis hypogaea HOM05D002393 ORTHO05D002845 3.7e-09 67.4 49 65.3
RcHm_v2.0_Chr1g0336791 Rosa chinensis HOM05D005033 ORTHO05D036613 2.7e-07 61.2 34 79.4
RcHm_v2.0_Chr4g0414881 Rosa chinensis HOM05D005033 ORTHO05D036613 2.3e-06 58.2 32 78.1
MD08G1003200 Malus domestica HOM05D005033 ORTHO05D245307 3.9e-06 57.4 66 47.0


User provided reference genes

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