Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020463 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 2.9e-51 204.9 100 100.0
CSS0045271 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 5.2e-37 157.5 100 82.0
Hma1.2p1_0102F.1_g049740 Hydrangea macrophylla HOM05D000372 ORTHO05D003436 2.9e-35 151.8 100 79.0
Ciclev10010162m.g Citrus clementina HOM05D000372 ORTHO05D003436 1.1e-34 149.8 100 76.0
Dinv19797 Davidia involucrata HOM05D000372 ORTHO05D003436 1.1e-34 149.8 100 79.0
TAR383G1081 Trochodendron aralioides HOM05D000372 ORTHO05D003436 1.1e-34 149.8 100 77.0
GSVIVG01033164001 Vitis vinifera HOM05D000372 ORTHO05D003436 1.1e-34 149.8 100 79.0
CSS0020280 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 1.4e-34 149.4 100 79.0
CSS0035630 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 1.4e-34 149.4 100 79.0
Dinv06101 Davidia involucrata HOM05D000372 ORTHO05D003436 1.4e-34 149.4 100 78.0
Actinidia23121 Actinidia chinensis HOM05D000372 ORTHO05D003436 1.9e-34 149.1 100 78.0
Cfa017850 Carpinus fangiana HOM05D000372 ORTHO05D003436 1.9e-34 149.1 100 76.0
Haze_18342 Corylus avellana HOM05D000372 ORTHO05D003436 1.9e-34 149.1 100 76.0
Medtr3g105590 Medicago truncatula HOM05D000372 ORTHO05D003436 1.9e-34 149.1 100 76.0
QL02p017417 Quercus lobata HOM05D000372 ORTHO05D003436 2.4e-34 148.7 100 76.0
COL.COLO4_19011 Corchorus olitorius HOM05D000372 ORTHO05D003436 4.2e-34 147.9 100 77.0
Cc08_g06200 Coffea canephora HOM05D000372 ORTHO05D003436 7.1e-34 147.1 100 77.0
Lj1g0015187 Lotus japonicus HOM05D000372 ORTHO05D003436 7.1e-34 147.1 100 76.0
Prupe.1G400900 Prunus persica HOM05D000372 ORTHO05D003436 7.1e-34 147.1 100 77.0
Duzib150G0268 Durio zibethinus HOM05D000372 ORTHO05D003436 9.2e-34 146.7 100 75.0
Duzib187G1714 Durio zibethinus HOM05D000372 ORTHO05D003436 9.2e-34 146.7 100 75.0
MD08G1047400 Malus domestica HOM05D000372 ORTHO05D003436 9.2e-34 146.7 100 75.0
TPR.G21426 Trifolium pratense HOM05D000372 ORTHO05D003436 1.2e-33 146.4 100 74.0
CiPaw.16G070900 Carya illinoinensis HOM05D000372 ORTHO05D003436 1.6e-33 146.0 100 74.0
Ca_15798_v3 Cicer arietinum L. HOM05D000372 ORTHO05D003436 1.6e-33 146.0 100 75.0
Thecc.09G009700 Theobroma cacao HOM05D000372 ORTHO05D003436 1.6e-33 146.0 100 75.0
Manes.03G005600 Manihot esculenta HOM05D000372 ORTHO05D003436 2.1e-33 145.6 100 75.0
Oeu023248.1 Olea europaea HOM05D000372 ORTHO05D003436 2.1e-33 145.6 100 75.0
Duzib168G1416 Durio zibethinus HOM05D000372 ORTHO05D003436 2.7e-33 145.2 100 73.0
Gohir.A05G062700 Gossypium hirsutum HOM05D000372 ORTHO05D003436 2.7e-33 145.2 100 73.0
Gohir.A05G063000 Gossypium hirsutum HOM05D000372 ORTHO05D003436 2.7e-33 145.2 100 73.0
Gohir.D05G065500 Gossypium hirsutum HOM05D000372 ORTHO05D003436 2.7e-33 145.2 100 73.0
Gorai.009G066300 Gossypium raimondii HOM05D000372 ORTHO05D003436 2.7e-33 145.2 100 73.0
Peaxi162Scf00288g01010 Petunia axillaris HOM05D000372 ORTHO05D003436 2.7e-33 145.2 100 76.0
DCAR_003039 Daucus carota HOM05D000372 ORTHO05D003436 3.5e-33 144.8 100 77.0
Nitab4.5_0000502g0160 Nicotiana tabacum HOM05D000372 ORTHO05D003436 3.5e-33 144.8 100 75.0
Nitab4.5_0006884g0010 Nicotiana tabacum HOM05D000372 ORTHO05D003436 3.5e-33 144.8 100 75.0
SalBow4G3322 Salvia bowleyana HOM05D000372 ORTHO05D003436 3.5e-33 144.8 100 75.0
ATR0580G441 Amborella trichopoda HOM05D000372 ORTHO05D003436 4.6e-33 144.4 100 77.0
Psat5g033760 Pisum sativum HOM05D000372 ORTHO05D003436 4.6e-33 144.4 100 74.0
SEGI_17810 Sequoiadendron giganteum HOM05D000372 ORTHO05D003436 4.6e-33 144.4 100 75.0
arahy.Tifrunner.gnm1.ann1.2363PW Arachis hypogaea HOM05D000372 ORTHO05D003436 6.0e-33 144.1 100 74.0
arahy.Tifrunner.gnm1.ann1.CV2UMV Arachis hypogaea HOM05D000372 ORTHO05D003436 6.0e-33 144.1 100 74.0
arahy.Tifrunner.gnm1.ann1.IKLL4G Arachis hypogaea HOM05D000372 ORTHO05D003436 6.0e-33 144.1 100 74.0
MBI14_g24282_MAGBIO Magnolia biondii HOM05D000372 ORTHO05D003436 6.0e-33 144.1 100 75.0
Ca_13081_v3 Cicer arietinum L. HOM05D000372 ORTHO05D003436 7.8e-33 143.7 100 73.0
Glyma.14G105400 Glycine max HOM05D000372 ORTHO05D003436 7.8e-33 143.7 100 73.0
Glyma.17G220800 Glycine max HOM05D000372 ORTHO05D003436 7.8e-33 143.7 100 73.0
Medtr1g013360 Medicago truncatula HOM05D000372 ORTHO05D003436 7.8e-33 143.7 100 74.0
Migut.A00416 Erythranthe guttata HOM05D000372 ORTHO05D003436 1.0e-32 143.3 100 73.0
Gohir.D05G065200 Gossypium hirsutum HOM05D000372 ORTHO05D003436 1.0e-32 143.3 100 72.0
Gorai.009G066000 Gossypium raimondii HOM05D000372 ORTHO05D003436 1.0e-32 143.3 100 72.0
Lj7C743T9 Lonicera japonica HOM05D000372 ORTHO05D003436 1.0e-32 143.3 100 74.0
Phvul.001G043600 Phaseolus vulgaris HOM05D000372 ORTHO05D003436 1.0e-32 143.3 100 72.0
VMungo0647G1491 Vigna mungo HOM05D000372 ORTHO05D003436 1.0e-32 143.3 100 72.0
FvH4_2g37120 Fragaria vesca HOM05D000372 ORTHO05D003436 1.3e-32 142.9 100 73.0
FAN20G1896 Fragaria x ananassa HOM05D000372 ORTHO05D003436 1.3e-32 142.9 100 73.0
FAN27G2462 Fragaria x ananassa HOM05D000372 ORTHO05D003436 1.3e-32 142.9 100 73.0
Potri.006G270500 Populus trichocarpa HOM05D000372 ORTHO05D003436 1.3e-32 142.9 100 72.0
RcHm_v2.0_Chr6g0304671 Rosa chinensis HOM05D000372 ORTHO05D003436 1.3e-32 142.9 100 72.0
Sabra06G0210300 Salix brachista HOM05D000372 ORTHO05D003436 1.3e-32 142.9 100 72.0
SalBow8G1746 Salvia bowleyana HOM05D000372 ORTHO05D003436 1.3e-32 142.9 100 74.0
SalBow8G4869 Salvia bowleyana HOM05D000372 ORTHO05D003436 1.3e-32 142.9 100 74.0
SGA_v2.0_scaffold121G33025 Striga asiatica HOM05D000372 ORTHO05D003436 1.3e-32 142.9 100 73.0
TWI63G0489 Tripterygium wilfordii HOM05D000372 ORTHO05D003436 1.3e-32 142.9 100 74.0
CSS0002412 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 1.7e-32 142.5 94 79.8
Lj5g0022261 Lotus japonicus HOM05D000372 ORTHO05D003436 1.7e-32 142.5 100 72.0
Oeu008769.1 Olea europaea HOM05D000372 ORTHO05D003436 1.7e-32 142.5 100 72.0
CANSAT25G2139 Cannabis sativa HOM05D000372 ORTHO05D003436 2.3e-32 142.1 100 74.0
Cpa.g.sc23.44 Carica papaya HOM05D000372 ORTHO05D003436 2.3e-32 142.1 100 70.0
ClCG05G016010 Citrullus lanatus HOM05D000372 ORTHO05D003436 2.3e-32 142.1 100 72.0
MELO3C016937.2 Cucumis melo HOM05D000372 ORTHO05D003436 2.3e-32 142.1 100 72.0
CsaV3_4G036290 Cucumis sativus L. HOM05D000372 ORTHO05D003436 2.3e-32 142.1 100 72.0
Glyma.04G058400 Glycine max HOM05D000372 ORTHO05D003436 2.3e-32 142.1 100 73.0
Glyma.U003300 Glycine max HOM05D000372 ORTHO05D003436 2.3e-32 142.1 100 73.0
Phvul.009G084900 Phaseolus vulgaris HOM05D000372 ORTHO05D003436 2.3e-32 142.1 100 73.0
Solyc08g068960.3 Solanum lycopersicum HOM05D000372 ORTHO05D003436 2.3e-32 142.1 100 73.0
Sopen08g022620 Solanum pennellii HOM05D000372 ORTHO05D003436 2.3e-32 142.1 100 73.0
PGSC0003DMG400029542 Solanum tuberosum HOM05D000372 ORTHO05D003436 2.3e-32 142.1 100 73.0
VMungo1309G2648 Vigna mungo HOM05D000372 ORTHO05D003436 2.3e-32 142.1 100 73.0
CAN.G808.7 Capsicum annuum HOM05D000372 ORTHO05D003436 3.0e-32 141.7 100 74.0
Migut.E01430 Erythranthe guttata HOM05D000372 ORTHO05D003436 3.0e-32 141.7 100 72.0
Rhsim07G0169300 Rhododendron simsii HOM05D000372 ORTHO05D003436 3.0e-32 141.7 100 75.0
Medtr1g014670 Medicago truncatula HOM05D000372 ORTHO05D003436 5.1e-32 141.0 100 72.0
Sed0022125 Sechium edule HOM05D000372 ORTHO05D003436 5.1e-32 141.0 100 71.0
FAN15G3394 Fragaria x ananassa HOM05D000372 ORTHO05D003436 6.6e-32 140.6 100 72.0
TPR.G38926 Trifolium pratense HOM05D000372 ORTHO05D003436 6.6e-32 140.6 100 73.0
EL10Ac2g02429 Beta vulgaris HOM05D000372 ORTHO05D003436 8.7e-32 140.2 100 71.0
Nn8g40299 Nelumbo nucifera HOM05D000372 ORTHO05D003436 8.7e-32 140.2 100 72.0
HPP92_011627 Vanilla planifolia HOM05D000372 ORTHO05D003436 8.7e-32 140.2 100 71.0
Lalb_Chr14g0375411 Lupinus albus HOM05D000372 ORTHO05D003436 1.1e-31 139.8 100 69.0
TWI32G0796 Tripterygium wilfordii HOM05D000372 ORTHO05D003436 1.1e-31 139.8 100 70.0
MD15G1046500 Malus domestica HOM05D000372 ORTHO05D003436 1.5e-31 139.4 100 70.0
Manes.16G133700 Manihot esculenta HOM05D000372 ORTHO05D003436 1.5e-31 139.4 100 72.0
arahy.Tifrunner.gnm1.ann1.54Q5ZL Arachis hypogaea HOM05D000372 ORTHO05D003436 1.9e-31 139.0 100 69.0
arahy.Tifrunner.gnm1.ann1.672M4G Arachis hypogaea HOM05D000372 ORTHO05D003436 1.9e-31 139.0 100 69.0
HanXRQChr03g0082521 Helianthus annuus HOM05D000372 ORTHO05D003436 1.9e-31 139.0 100 70.0
Psat6g023640 Pisum sativum HOM05D000372 ORTHO05D003436 1.9e-31 139.0 100 71.0
Psat7g193560 Pisum sativum HOM05D000372 ORTHO05D003436 1.9e-31 139.0 100 71.0
Potri.018G011400 Populus trichocarpa HOM05D000372 ORTHO05D003436 1.9e-31 139.0 100 70.0
Sc09g0010830 Simmondsia chinensis HOM05D000372 ORTHO05D003436 1.9e-31 139.0 100 70.0
HanXRQChr06g0174111 Helianthus annuus HOM05D000372 ORTHO05D003436 2.5e-31 138.7 100 71.0
vmacro05111 Vaccinium macrocarpon HOM05D000372 ORTHO05D003436 2.5e-31 138.7 100 71.0
AUR62020299 Chenopodium quinoa HOM05D000372 ORTHO05D003436 3.3e-31 138.3 100 70.0
TPR.G38882 Trifolium pratense HOM05D000372 ORTHO05D003436 3.3e-31 138.3 100 68.0
CSS0018460 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 4.3e-31 137.9 103 71.8
ECA240G4325 Erigeron canadensis HOM05D000372 ORTHO05D003436 4.3e-31 137.9 100 70.0
Sabra18G0012300 Salix brachista HOM05D000372 ORTHO05D003436 4.3e-31 137.9 100 70.0
Lsat_1_v5_gn_5_62200 Lactuca sativa HOM05D000372 ORTHO05D003436 5.6e-31 137.5 100 69.0
Psat6g023560 Pisum sativum HOM05D000372 ORTHO05D003436 7.3e-31 137.1 100 68.0
Aqoxy7G03181 Aquilegia oxysepala HOM05D000372 ORTHO05D003436 1.3e-30 136.3 100 70.0
Sed0000787 Sechium edule HOM05D000372 ORTHO05D003436 1.6e-30 136.0 100 70.0
Sc23g0006190 Simmondsia chinensis HOM05D000372 ORTHO05D003436 1.6e-30 136.0 100 69.0
HanXRQChr06g0174121 Helianthus annuus HOM05D000372 ORTHO05D003436 2.8e-30 135.2 100 71.0
ECA246G0477 Erigeron canadensis HOM05D000372 ORTHO05D003436 3.6e-30 134.8 100 69.0
Migut.E00913 Erythranthe guttata HOM05D000372 ORTHO05D003436 3.6e-30 134.8 100 67.0
PSO063G4267 Papaver somniferum HOM05D000372 ORTHO05D003436 4.8e-30 134.4 100 67.0
PSO782G1259 Papaver somniferum HOM05D000372 ORTHO05D003436 4.8e-30 134.4 100 67.0
Lsat_1_v5_gn_3_25440 Lactuca sativa HOM05D000372 ORTHO05D003436 6.2e-30 134.0 100 68.0
PGR044G0422 Punica granatum HOM05D000372 ORTHO05D003436 1.1e-29 133.3 100 66.0
THA.LOC104819942 Tarenaya hassleriana HOM05D000372 ORTHO05D003436 1.4e-29 132.9 100 67.0
AUR62037701 Chenopodium quinoa HOM05D000372 ORTHO05D003436 1.8e-29 132.5 100 69.0
Eucgr.C04019 Eucalyptus grandis HOM05D000372 ORTHO05D003436 1.8e-29 132.5 100 68.0
Hund25587 Selenicereus undatus HOM05D000372 ORTHO05D003436 5.3e-29 131.0 125 56.8
THA.LOC104803327 Tarenaya hassleriana HOM05D000372 ORTHO05D003436 4.4e-28 127.9 100 64.0
DCAR_003038 Daucus carota HOM05D000372 ORTHO05D003436 1.7e-27 125.9 100 65.0
Sp2g22540 Schrenkiella parvula HOM05D000372 ORTHO05D003436 3.8e-27 124.8 100 64.0
Sp6g32740 Schrenkiella parvula HOM05D000372 ORTHO05D003436 8.4e-27 123.6 100 63.0
Thhalv10012606m.g Eutrema salsugineum HOM05D000372 ORTHO05D003436 1.4e-26 122.9 100 62.0
Aa31LG3G16390 Aethionema arabicum HOM05D000372 ORTHO05D003436 2.4e-26 122.1 100 62.0
BcaB08g37314 Brassica carinata HOM05D000372 ORTHO05D003436 7.1e-26 120.6 100 62.0
BcaC04g19290 Brassica carinata HOM05D000372 ORTHO05D003436 7.1e-26 120.6 100 62.0
A10p26890 Brassica napus HOM05D000372 ORTHO05D003436 7.1e-26 120.6 100 62.0
C09p66090 Brassica napus HOM05D000372 ORTHO05D003436 7.1e-26 120.6 100 62.0
BolC9t59429H Brassica oleracea HOM05D000372 ORTHO05D003436 7.1e-26 120.6 100 62.0
BraA10t44741Z Brassica rapa HOM05D000372 ORTHO05D003436 7.1e-26 120.6 100 62.0
Carub.0006s0919 Capsella rubella HOM05D000372 ORTHO05D003436 9.3e-26 120.2 100 61.0
Oeu008770.2 Olea europaea HOM05D000372 ORTHO05D003436 1.2e-25 119.8 100 63.0
BcaB01g05503 Brassica carinata HOM05D000372 ORTHO05D003436 1.6e-25 119.4 100 61.0
A03p04730 Brassica napus HOM05D000372 ORTHO05D003436 1.6e-25 119.4 100 61.0
C03p05430 Brassica napus HOM05D000372 ORTHO05D003436 1.6e-25 119.4 100 61.0
BolC3t13054H Brassica oleracea HOM05D000372 ORTHO05D003436 1.6e-25 119.4 100 61.0
BraA03t09813Z Brassica rapa HOM05D000372 ORTHO05D003436 1.6e-25 119.4 100 61.0
AT5G10720 Arabidopsis thaliana HOM05D000372 ORTHO05D003436 2.1e-25 119.0 100 60.0
CARHR155340 Cardamine hirsuta HOM05D000372 ORTHO05D003436 2.1e-25 119.0 100 60.0
AL6G21260 Arabidopsis lyrata HOM05D000372 ORTHO05D003436 2.7e-25 118.6 100 60.0
CARHR202600 Cardamine hirsuta HOM05D000372 ORTHO05D003436 2.7e-25 118.6 100 61.0
BcaB01g06273 Brassica carinata HOM05D000372 ORTHO05D003436 3.5e-25 118.2 100 60.0
BcaB01g06275 Brassica carinata HOM05D000372 ORTHO05D003436 3.5e-25 118.2 100 60.0
CSS0030725 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 3.5e-25 118.2 100 67.0
Sp2g06120 Schrenkiella parvula HOM05D000372 ORTHO05D003436 3.5e-25 118.2 100 59.0
BcaB05g21500 Brassica carinata HOM05D000372 ORTHO05D003436 6.0e-25 117.5 100 60.0
BcaC03g13326 Brassica carinata HOM05D000372 ORTHO05D003436 6.0e-25 117.5 100 60.0
A02p00610 Brassica napus HOM05D000372 ORTHO05D003436 6.0e-25 117.5 100 60.0
C02p04600 Brassica napus HOM05D000372 ORTHO05D003436 6.0e-25 117.5 100 60.0
Lsat_1_v5_gn_3_116581 Lactuca sativa HOM05D000372 ORTHO05D003436 7.8e-25 117.1 90 68.9
Aa31LG3G16410 Aethionema arabicum HOM05D000372 ORTHO05D003436 1.3e-24 116.3 100 59.0
BolC2t06420H Brassica oleracea HOM05D000372 ORTHO05D003436 1.3e-24 116.3 103 59.2
BraA02t05044Z Brassica rapa HOM05D000372 ORTHO05D003436 1.3e-24 116.3 103 59.2
BraA03t09812Z Brassica rapa HOM05D000372 ORTHO05D003436 2.3e-24 115.5 100 59.0
A03p04720 Brassica napus HOM05D000372 ORTHO05D003436 6.6e-24 114.0 100 58.0
Ah.10g025030 Amaranthus hybridus HOM05D000372 ORTHO05D003436 1.1e-23 113.2 65 83.1
AL6G21200 Arabidopsis lyrata HOM05D000372 ORTHO05D003436 1.9e-23 112.5 100 56.0
PSO170G2710 Papaver somniferum HOM05D000372 ORTHO05D003436 4.3e-23 111.3 100 58.0
Mapoly0139s0010 Marchantia polymorpha HOM05D000372 ORTHO05D003436 9.6e-23 110.2 100 56.0
BcaB03g12249 Brassica carinata HOM05D000372 ORTHO05D003436 8.1e-22 107.1 100 55.0
Pp3c1_29920 Physcomitrium patens HOM05D000372 ORTHO05D003436 5.8e-20 100.9 100 51.0
Os06g0654300 Oryza sativa ssp. japonica HOM05D000372 ORTHO05D003436 4.9e-19 97.8 100 48.0
Zm00001eb389570 Zea mays HOM05D000372 ORTHO05D003436 3.2e-18 95.1 100 45.0
Zm00001eb274910 Zea mays HOM05D000372 ORTHO05D003436 5.4e-18 94.4 100 45.0
Pp3c1_9540 Physcomitrium patens HOM05D000372 ORTHO05D003436 9.6e-15 83.6 100 48.0
SMO271G0024 Selaginella moellendorffii HOM05D000372 ORTHO05D003436 9.6e-15 83.6 100 46.0
Pp3c2_36790 Physcomitrium patens HOM05D000372 ORTHO05D003436 1.8e-13 79.3 100 46.0
Pp3c2_6520 Physcomitrium patens HOM05D000372 ORTHO05D003436 1.5e-12 76.3 56 58.9
BcaB01g05504 Brassica carinata HOM05D000372 ORTHO05D003436 1.4e-10 69.7 46 73.9
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 7.1e-10 67.4 63 60.3
Psat7g119840 Pisum sativum HOM05D000372 ORTHO05D003436 7.9e-09 63.9 35 80.0
Psat1g043080 Pisum sativum HOM05D000372 ORTHO05D003436 1.0e-08 63.5 35 80.0
BolC3t20024H Brassica oleracea HOM05D000372 ORTHO05D003436 1.3e-08 63.2 100 38.0


User provided reference genes

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