Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020447 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 4.5e-43 177.6 91 100.0
Thecc.09G038200 Theobroma cacao HOM05D006214 ORTHO05D007723 5.1e-31 137.5 84 82.1
Actinidia31216 Actinidia chinensis HOM05D006214 ORTHO05D007723 1.9e-30 135.6 84 82.1
CSS0015630 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.9e-30 135.6 84 79.8
CSS0049547 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.9e-30 135.6 84 79.8
QL12p026136 Quercus lobata HOM05D006214 ORTHO05D007723 1.9e-30 135.6 84 82.1
Actinidia13304 Actinidia chinensis HOM05D006214 ORTHO05D007723 2.5e-30 135.2 84 82.1
COL.COLO4_18710 Corchorus olitorius HOM05D006214 ORTHO05D007723 2.5e-30 135.2 84 79.8
AUR62032401 Chenopodium quinoa HOM05D006214 ORTHO05D007723 3.3e-30 134.8 84 79.8
PGSC0003DMG400014492 Solanum tuberosum HOM05D006214 ORTHO05D007723 7.4e-30 133.7 84 79.8
Peaxi162Scf00105g00059 Petunia axillaris HOM05D006214 ORTHO05D007723 9.6e-30 133.3 84 78.6
TAR624G0931 Trochodendron aralioides HOM05D006214 ORTHO05D007723 9.6e-30 133.3 84 79.8
Nitab4.5_0002393g0090 Nicotiana tabacum HOM05D006214 ORTHO05D007723 1.6e-29 132.5 84 78.6
CARHR240670 Cardamine hirsuta HOM05D006214 ORTHO05D007723 2.1e-29 132.1 84 77.4
CiPaw.07G208400 Carya illinoinensis HOM05D006214 ORTHO05D007723 2.1e-29 132.1 84 79.8
Potri.006G244300 Populus trichocarpa HOM05D006214 ORTHO05D007723 2.1e-29 132.1 84 78.6
Solyc08g068070.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 2.8e-29 131.7 84 78.6
arahy.Tifrunner.gnm1.ann1.8TR5WT Arachis hypogaea HOM05D006214 ORTHO05D007723 3.7e-29 131.3 84 78.6
Haze_21823 Corylus avellana HOM05D006214 ORTHO05D007723 3.7e-29 131.3 84 79.8
Oeu011261.1 Olea europaea HOM05D006214 ORTHO05D007723 3.7e-29 131.3 84 77.4
PSO063G0005 Papaver somniferum HOM05D006214 ORTHO05D007723 3.7e-29 131.3 84 78.6
Hund25645 Selenicereus undatus HOM05D006214 ORTHO05D007723 3.7e-29 131.3 84 77.4
TPR.G12079 Trifolium pratense HOM05D006214 ORTHO05D007723 3.7e-29 131.3 84 78.6
arahy.Tifrunner.gnm1.ann1.72Y1Y4 Arachis hypogaea HOM05D006214 ORTHO05D007723 4.8e-29 131.0 84 79.8
Ciclev10009715m.g Citrus clementina HOM05D006214 ORTHO05D007723 4.8e-29 131.0 84 77.4
Thhalv10026389m.g Eutrema salsugineum HOM05D006214 ORTHO05D007723 4.8e-29 131.0 84 77.4
Lsat_1_v5_gn_6_11341 Lactuca sativa HOM05D006214 ORTHO05D007723 4.8e-29 131.0 84 77.4
AT4G32690 Arabidopsis thaliana HOM05D006214 ORTHO05D007723 6.2e-29 130.6 84 77.4
A01p05650 Brassica napus HOM05D003889 ORTHO05D004407 6.2e-29 130.6 84 76.2
BraA01t00535Z Brassica rapa HOM05D003889 ORTHO05D004407 6.2e-29 130.6 84 76.2
Gohir.D13G192400 Gossypium hirsutum HOM05D006214 ORTHO05D007723 6.2e-29 130.6 85 77.6
Gorai.013G218300 Gossypium raimondii HOM05D006214 ORTHO05D007723 6.2e-29 130.6 85 77.6
Nitab4.5_0000250g0190 Nicotiana tabacum HOM05D006214 ORTHO05D007723 6.2e-29 130.6 84 77.4
CiPaw.08G022500 Carya illinoinensis HOM05D006214 ORTHO05D007723 8.2e-29 130.2 84 77.4
Duzib168G0494 Durio zibethinus HOM05D006214 ORTHO05D007723 8.2e-29 130.2 84 78.6
Eucgr.C02883 Eucalyptus grandis HOM05D006214 ORTHO05D007723 8.2e-29 130.2 84 76.2
Manes.03G064300 Manihot esculenta HOM05D006214 ORTHO05D007723 8.2e-29 130.2 84 77.4
Cpa.g.sc205.8 Carica papaya HOM05D006214 ORTHO05D007723 1.1e-28 129.8 84 77.4
Glyma.14G140400 Glycine max HOM05D006214 ORTHO05D007723 1.1e-28 129.8 84 78.6
Nn8g39214 Nelumbo nucifera HOM05D006214 ORTHO05D007723 1.1e-28 129.8 84 77.4
Oeu014655.1 Olea europaea HOM05D006214 ORTHO05D007723 1.1e-28 129.8 84 77.4
Psat6g005800 Pisum sativum HOM05D006214 ORTHO05D007723 1.1e-28 129.8 84 77.4
PGR044G2495 Punica granatum HOM05D006214 ORTHO05D007723 1.1e-28 129.8 84 77.4
TWI34G1412 Tripterygium wilfordii HOM05D006214 ORTHO05D007723 1.1e-28 129.8 84 76.2
GSVIVG01035713001 Vitis vinifera HOM05D006214 ORTHO05D007723 1.1e-28 129.8 84 77.4
Duzib150G0825 Durio zibethinus HOM05D006214 ORTHO05D007723 1.4e-28 129.4 85 77.6
Hma1.2p1_0003F.1_g003500 Hydrangea macrophylla HOM05D006214 ORTHO05D007723 1.4e-28 129.4 84 76.2
PSO782G3114 Papaver somniferum HOM05D006214 ORTHO05D007723 1.4e-28 129.4 84 77.4
Cfa013332 Carpinus fangiana HOM05D006214 ORTHO05D007723 1.8e-28 129.0 84 78.6
Dinv30243 Davidia involucrata HOM05D006214 ORTHO05D007723 1.8e-28 129.0 84 75.0
THA.LOC104803814 Tarenaya hassleriana HOM05D006214 ORTHO05D007723 1.8e-28 129.0 84 75.0
Aa31LG2G16930 Aethionema arabicum HOM05D006214 ORTHO05D007723 2.4e-28 128.6 84 75.0
AL7G19050 Arabidopsis lyrata HOM05D006214 ORTHO05D007723 2.4e-28 128.6 84 75.0
FvH4_2g36290 Fragaria vesca HOM05D006214 ORTHO05D007723 2.4e-28 128.6 84 76.2
FAN20G2536 Fragaria x ananassa HOM05D006214 ORTHO05D007723 2.4e-28 128.6 84 76.2
Lj8A606G25 Lonicera japonica HOM05D006214 ORTHO05D007723 2.4e-28 128.6 82 78.0
MD15G1099500 Malus domestica HOM05D006214 ORTHO05D007723 2.4e-28 128.6 84 77.4
Sabra06G0191200 Salix brachista HOM05D006214 ORTHO05D007723 2.4e-28 128.6 85 77.6
RcHm_v2.0_Chr6g0305591 Rosa chinensis HOM05D006214 ORTHO05D007723 3.1e-28 128.3 84 76.2
Sp7g30450 Schrenkiella parvula HOM05D006214 ORTHO05D007723 3.1e-28 128.3 84 75.0
Aqoxy7G01701 Aquilegia oxysepala HOM05D006214 ORTHO05D007723 5.3e-28 127.5 85 80.0
Carub.0007s0784 Capsella rubella HOM05D006214 ORTHO05D007723 5.3e-28 127.5 84 73.8
Sed0020806 Sechium edule HOM05D006214 ORTHO05D007723 5.3e-28 127.5 84 75.0
C01p06220 Brassica napus HOM05D003889 ORTHO05D004407 6.9e-28 127.1 85 75.3
BolC1t00620H Brassica oleracea HOM05D006214 ORTHO05D007723 6.9e-28 127.1 85 75.3
Migut.A00249 Erythranthe guttata HOM05D006214 ORTHO05D007723 6.9e-28 127.1 84 76.2
CsaV3_2G031100 Cucumis sativus L. HOM05D006214 ORTHO05D007723 9.0e-28 126.7 84 75.0
DCAR_001036 Daucus carota HOM05D006214 ORTHO05D007723 9.0e-28 126.7 84 77.4
FAN15G3028 Fragaria x ananassa HOM05D006214 ORTHO05D007723 9.0e-28 126.7 84 75.0
Sopen08g021960 Solanum pennellii HOM05D006214 ORTHO05D007723 9.0e-28 126.7 84 76.2
VMungo0647G2273 Vigna mungo HOM05D006214 ORTHO05D007723 9.0e-28 126.7 84 77.4
MELO3C011160.2 Cucumis melo HOM05D006214 ORTHO05D007723 1.2e-27 126.3 84 75.0
MBI04_g08934_MAGBIO Magnolia biondii HOM05D006214 ORTHO05D003073 1.2e-27 126.3 84 76.2
Medtr1g008700 Medicago truncatula HOM05D006214 ORTHO05D007723 1.2e-27 126.3 85 76.5
Ah.12g061040 Amaranthus hybridus HOM05D006214 ORTHO05D007723 1.5e-27 125.9 88 73.9
SGA_v2.0_scaffold27G11530 Striga asiatica HOM05D006214 ORTHO05D007723 1.5e-27 125.9 84 75.0
FAN27G2409 Fragaria x ananassa HOM05D006214 ORTHO05D007723 2.0e-27 125.6 84 75.0
Sc06g0000690 Simmondsia chinensis HOM05D006214 ORTHO05D007723 2.0e-27 125.6 84 72.6
CANSAT25G2048 Cannabis sativa HOM05D006214 ORTHO05D007723 2.6e-27 125.2 84 75.0
Ca_12821_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 2.6e-27 125.2 84 73.8
Ca_12822_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 2.6e-27 125.2 84 73.8
ATR1120G189 Amborella trichopoda HOM05D006214 ORTHO05D007723 5.8e-27 124.0 84 77.4
Manes.16G067000 Manihot esculenta HOM05D006214 ORTHO05D007723 5.8e-27 124.0 84 73.8
BcaC09g52063 Brassica carinata HOM05D003889 ORTHO05D004407 7.6e-27 123.6 85 74.1
Cc08_g08530 Coffea canephora HOM05D006214 ORTHO05D007723 7.6e-27 123.6 84 73.8
HanXRQChr07g0192221 Helianthus annuus HOM05D006214 ORTHO05D007723 1.0e-26 123.2 84 73.8
Lj1g0018927 Lotus japonicus HOM05D006214 ORTHO05D007723 1.7e-26 122.5 84 76.2
Psat0s1478g0160 Pisum sativum HOM05D006214 ORTHO05D007723 1.7e-26 122.5 84 75.0
Lalb_Chr22g0361001 Lupinus albus HOM05D006214 ORTHO05D007723 2.2e-26 122.1 84 72.6
Prupe.1G454300 Prunus persica HOM05D006214 ORTHO05D007723 2.9e-26 121.7 84 71.4
Lj1g0018426 Lotus japonicus HOM05D006214 ORTHO05D007723 3.8e-26 121.3 84 72.6
Atru.chr7.2182 Acer truncatum HOM05D006214 ORTHO05D007723 4.9e-26 120.9 84 70.2
Atru.chr7.2299 Acer truncatum HOM05D006214 ORTHO05D007723 4.9e-26 120.9 84 70.2
Ca_15627_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 4.9e-26 120.9 82 74.4
SEGI_02532 Sequoiadendron giganteum HOM05D006214 ORTHO05D007723 4.9e-26 120.9 84 71.4
Lalb_Chr08g0243361 Lupinus albus HOM05D006214 ORTHO05D007723 6.5e-26 120.6 86 74.4
Solyc08g068090.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 6.5e-26 120.6 84 72.6
Medtr3g109420 Medicago truncatula HOM05D006214 ORTHO05D007723 8.4e-26 120.2 84 72.6
Sopen08g021970 Solanum pennellii HOM05D006214 ORTHO05D007723 1.1e-25 119.8 84 72.6
VMungo1309G2769 Vigna mungo HOM05D006214 ORTHO05D007723 1.1e-25 119.8 84 72.6
Phvul.001G060001 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 1.4e-25 119.4 84 72.6
Phvul.009G104900 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 2.5e-25 118.6 84 70.2
TAR636G1550 Trochodendron aralioides HOM05D006214 ORTHO05D007723 2.5e-25 118.6 82 73.2
Rhsim02G0184100 Rhododendron simsii HOM05D006214 ORTHO05D007723 3.2e-25 118.2 81 74.1
SMO164G0258 Selaginella moellendorffii HOM05D006214 ORTHO05D007723 1.2e-24 116.3 84 67.9
TPR.G1342 Trifolium pratense HOM05D006214 ORTHO05D007723 1.6e-24 115.9 86 73.3
Glyma.04G079200 Glycine max HOM05D006214 ORTHO05D007723 3.5e-24 114.8 84 69.0
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 3.5e-24 114.8 84 67.9
Pp3c1_3380 Physcomitrium patens HOM05D006214 ORTHO05D007723 6.0e-24 114.0 82 67.1
arahy.Tifrunner.gnm1.ann1.LJ0T63 Arachis hypogaea HOM05D006214 ORTHO05D007723 1.0e-23 113.2 88 69.3
Os06g0591600 Oryza sativa ssp. japonica HOM05D006214 ORTHO05D007723 2.3e-23 112.1 86 69.8
Zm00001eb386050 Zea mays HOM05D006214 ORTHO05D007723 2.3e-23 112.1 86 67.4
ClCG08G012410 Citrullus lanatus HOM05D006214 ORTHO05D007723 5.1e-23 110.9 125 52.8
CAN.G886.7 Capsicum annuum HOM05D006214 ORTHO05D007723 6.7e-23 110.5 73 75.3
AagrBONN_evm.TU.Sc2ySwM_368.1910 Anthoceros agrestis HOM05D006214 ORTHO05D007723 3.3e-22 108.2 86 64.0
Pp3c6_250 Physcomitrium patens HOM05D006214 ORTHO05D007723 9.7e-22 106.7 84 59.5
HPP92_005176 Vanilla planifolia HOM05D006214 ORTHO05D007723 4.1e-20 101.3 115 52.2
Eucgr.L03669 Eucalyptus grandis HOM05D006214 ORTHO05D007723 1.3e-18 96.3 84 61.9
Gohir.D05G051050 Gossypium hirsutum HOM05D006214 ORTHO05D007723 7.9e-16 87.0 106 50.9
EL10Ac2g02522 Beta vulgaris HOM05D006214 ORTHO05D007723 4.1e-12 74.7 46 80.4
AUR62024819 Chenopodium quinoa HOM05D006214 ORTHO05D007723 1.1e-09 66.6 39 79.5
Lsat_1_v5_gn_6_11301 Lactuca sativa HOM05D006214 ORTHO05D007723 1.1e-09 66.6 40 80.0
ECA233G3302 Erigeron canadensis HOM05D006214 ORTHO05D007723 2.5e-09 65.5 38 81.6
HanXRQChr07g0195131 Helianthus annuus HOM05D006214 ORTHO05D007723 9.4e-09 63.5 45 71.1
Peaxi162Scf00105g00513 Petunia axillaris HOM05D006214 ORTHO05D007723 1.4e-07 59.7 82 43.9
Gorai.009G052700 Gossypium raimondii HOM05D006214 ORTHO05D007723 8.8e-07 57.0 39 69.2
SMO164G0257 Selaginella moellendorffii HOM05D014720 ORTHO05D377594 1.5e-06 56.2 47 63.8


User provided reference genes

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