Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 1.8e-146 522.7 285 100.0
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 6.6e-93 344.7 286 71.3
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 9.2e-87 324.3 262 71.4
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 3.5e-86 322.4 283 66.8
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 3.6e-83 312.4 280 65.4
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 4.7e-83 312.0 290 66.2
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 8.1e-83 311.2 293 63.1
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 1.1e-82 310.8 288 66.3
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 3.1e-82 309.3 284 64.4
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 8.9e-82 307.8 301 64.8
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 7.6e-81 304.7 290 64.5
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 3.8e-80 302.4 289 65.1
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 3.8e-80 302.4 290 64.1
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 2.1e-78 296.6 322 59.0
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 3.5e-78 295.8 286 62.6
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 1.0e-77 294.3 290 63.8
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 8.7e-77 291.2 282 62.4
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 1.9e-76 290.0 284 62.7
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 2.5e-76 289.7 287 65.2
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 4.3e-76 288.9 291 61.9
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 9.6e-76 287.7 207 76.8
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 2.4e-74 283.1 293 63.1
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 2.4e-74 283.1 246 67.9
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 5.3e-74 282.0 273 61.5
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 5.3e-74 282.0 292 60.6
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 5.8e-73 278.5 293 61.1
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 9.9e-73 277.7 291 60.1
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 1.3e-72 277.3 297 59.3
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.3e-72 277.3 292 60.6
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 4.9e-72 275.4 292 60.6
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 4.9e-72 275.4 282 61.3
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.2e-71 272.7 292 59.2
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 5.4e-71 271.9 282 61.0
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 1.2e-70 270.8 287 59.9
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 2.7e-70 269.6 293 60.8
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 3.5e-70 269.2 272 62.1
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 4.6e-70 268.9 283 58.7
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 1.3e-69 267.3 293 59.7
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 8.7e-69 264.6 288 59.4
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 1.5e-68 263.8 275 59.3
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 1.9e-68 263.5 279 57.0
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 2.5e-68 263.1 279 57.0
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 5.6e-68 261.9 272 59.6
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 7.3e-68 261.5 287 59.9
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 1.6e-67 260.4 267 58.1
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 2.1e-67 260.0 285 58.2
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 2.8e-67 259.6 271 60.1
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 2.8e-67 259.6 292 58.2
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 4.8e-67 258.8 284 57.4
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 6.2e-67 258.5 238 64.7
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 3.1e-66 256.1 283 57.6
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 6.9e-66 255.0 288 59.4
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 1.2e-65 254.2 227 67.8
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 3.4e-65 252.7 286 57.0
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 5.8e-65 251.9 274 59.1
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 7.6e-65 251.5 283 56.2
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 1.3e-64 250.8 280 56.4
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 4.9e-64 248.8 235 61.3
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 4.9e-64 248.8 289 58.8
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 1.9e-63 246.9 289 56.1
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.4e-63 246.5 289 58.5
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 2.4e-63 246.5 289 58.5
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 3.2e-63 246.1 283 56.5
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 4.2e-63 245.7 281 56.2
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 4.2e-63 245.7 281 56.2
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 2.7e-62 243.0 293 54.9
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 2.7e-62 243.0 206 68.4
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 1.0e-61 241.1 286 58.0
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 3.0e-61 239.6 271 59.0
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 5.1e-61 238.8 297 53.9
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 6.7e-61 238.4 275 57.1
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 6.7e-61 238.4 247 58.7
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 1.5e-60 237.3 274 57.7
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 3.3e-60 236.1 258 57.8
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 5.6e-60 235.3 274 57.7
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 7.4e-60 235.0 285 53.3
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 9.6e-60 234.6 246 57.7
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 2.8e-59 233.0 259 59.5
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 8.1e-59 231.5 274 56.2
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 8.1e-59 231.5 274 56.2
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 8.1e-59 231.5 274 56.2
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 1.8e-58 230.3 282 55.0
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 2.4e-58 229.9 271 57.2
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 5.3e-58 228.8 265 56.2
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 5.8e-57 225.3 259 53.7
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 5.8e-57 225.3 259 53.7
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 7.6e-57 224.9 288 53.1
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 1.4e-55 220.7 272 53.3
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 2.7e-54 216.5 202 64.9
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 3.5e-54 216.1 273 52.4
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 6.7e-53 211.8 218 58.3
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 3.3e-52 209.5 270 52.6
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 2.1e-51 206.8 272 51.5
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 2.4e-50 203.4 278 52.5
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 2.4e-50 203.4 198 65.2
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 3.1e-50 203.0 286 52.4
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 5.3e-50 202.2 289 51.9
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 2.0e-49 200.3 275 50.9
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 1.3e-48 197.6 269 52.0
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 8.4e-48 194.9 278 50.0
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 1.8e-45 187.2 272 49.6
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 4.8e-43 179.1 283 45.9
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 7.7e-41 171.8 257 49.4
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 2.2e-40 170.2 154 62.3
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 2.1e-38 163.7 275 46.9
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 6.1e-38 162.2 263 46.0
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 7.9e-38 161.8 279 44.4
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 1.5e-33 147.5 126 65.9
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 3.8e-32 142.9 131 64.9
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 1.1e-31 141.4 185 47.0
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 5.5e-31 139.0 223 47.1
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 9.4e-31 138.3 174 50.6
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 2.1e-30 137.1 199 46.7
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 1.8e-29 134.0 162 55.6
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 1.8e-29 134.0 162 55.6
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 8.2e-27 125.2 102 67.6
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 1.5e-25 120.9 126 57.9
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 4.5e-25 119.4 158 49.4
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 6.5e-24 115.5 188 43.1
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 1.9e-23 114.0 127 52.8
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 5.5e-23 112.5 153 54.2
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 5.5e-23 112.5 228 41.2
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 2.1e-22 110.5 168 45.2
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 2.0e-20 104.0 182 44.5
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 2.8e-19 100.1 232 35.8
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 3.5e-17 93.2 75 72.0
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 2.7e-14 83.6 128 49.2
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 1.8e-13 80.9 72 63.9
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 3.0e-13 80.1 209 36.4
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 6.3e-11 72.4 61 65.6
TAR629G0034 Trochodendron aralioides HOM05D005433 ORTHO05D006675 6.3e-11 72.4 76 56.6
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 3.5e-09 66.6 183 26.8
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 6.5e-08 62.4 49 65.3
CARHR090070 Cardamine hirsuta HOM05D005433 ORTHO05D006675 1.9e-07 60.8 75 50.7
Lalb_Chr03g0030791 Lupinus albus HOM05D005433 ORTHO05D006675 9.4e-07 58.5 98 44.9
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 6.1e-06 55.8 66 54.5
PRCOL_00001575 Prasinoderma coloniale HOM05D005433 ORTHO05D006675 6.1e-06 55.8 176 29.0


User provided reference genes

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