Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 3.8e-191 671.4 356 100.0
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 9.3e-145 517.3 261 99.6
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 3.7e-133 478.8 357 75.6
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 4.0e-132 475.3 361 74.2
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 6.9e-132 474.6 357 75.1
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 1.2e-131 473.8 360 74.4
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 3.5e-128 462.2 357 72.3
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 4.6e-120 435.3 357 69.2
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 3.9e-119 432.2 357 68.3
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 1.8e-116 423.3 357 67.8
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 1.2e-115 420.6 357 66.7
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 2.0e-115 419.9 363 65.8
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 9.4e-113 411.0 355 65.4
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 2.1e-112 409.8 360 66.9
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 2.7e-112 409.5 357 65.8
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 3.6e-112 409.1 359 66.0
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 6.1e-112 408.3 355 66.8
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 7.9e-112 407.9 358 65.1
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 1.0e-111 407.5 357 67.5
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 1.0e-111 407.5 357 66.4
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 1.8e-111 406.8 357 65.5
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 4.3e-110 402.1 407 59.0
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 4.3e-110 402.1 357 65.0
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 9.7e-110 401.0 359 65.2
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 9.7e-110 401.0 359 65.2
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 3.7e-109 399.1 359 65.2
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 4.8e-109 398.7 356 64.6
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 6.3e-109 398.3 357 65.0
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 6.3e-109 398.3 309 74.1
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 6.3e-109 398.3 357 64.7
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 6.3e-109 398.3 358 65.1
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 4.1e-108 395.6 361 63.7
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 5.3e-108 395.2 369 64.5
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.9e-108 394.8 357 64.7
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 1.2e-107 394.0 358 63.1
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 1.5e-107 393.7 359 64.1
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.0e-107 393.3 350 65.4
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 3.4e-107 392.5 358 64.2
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 4.5e-107 392.1 357 63.3
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 1.3e-106 390.6 364 64.6
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.9e-106 389.4 360 63.9
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 2.9e-106 389.4 356 63.2
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 2.9e-106 389.4 356 63.2
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 5.0e-106 388.7 356 62.9
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 6.5e-106 388.3 357 63.6
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 8.5e-106 387.9 357 64.4
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 2.5e-105 386.3 358 63.7
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 5.5e-105 385.2 359 63.8
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 7.2e-105 384.8 356 63.2
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 9.4e-105 384.4 357 63.3
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 9.4e-105 384.4 356 63.2
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 1.6e-104 383.6 358 62.3
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 1.6e-104 383.6 357 63.6
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 2.7e-104 382.9 357 63.3
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 3.6e-104 382.5 358 63.4
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 3.6e-104 382.5 358 63.4
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 7.9e-104 381.3 356 62.6
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.1e-102 377.5 357 61.1
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 3.3e-102 375.9 357 61.3
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 4.4e-102 375.6 357 60.8
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 3.7e-101 372.5 360 61.9
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 8.2e-101 371.3 364 61.3
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 1.4e-100 370.5 357 60.5
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.4e-100 370.5 357 62.2
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 4.1e-100 369.0 361 61.8
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 1.6e-99 367.1 357 60.5
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 2.0e-99 366.7 362 61.6
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.6e-99 366.3 357 61.6
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 3.5e-99 365.9 364 60.2
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 3.5e-99 365.9 422 54.5
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 5.9e-99 365.2 357 61.6
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 1.7e-98 363.6 362 61.3
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 2.9e-98 362.8 358 60.6
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 2.9e-98 362.8 358 60.6
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 8.5e-98 361.3 361 61.2
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 5.5e-97 358.6 357 58.5
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 9.4e-97 357.8 357 61.1
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 1.2e-96 357.5 357 58.8
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 4.7e-96 355.5 357 59.1
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 4.7e-96 355.5 427 52.7
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 1.8e-95 353.6 357 58.5
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 2.3e-95 353.2 362 59.1
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 4.4e-94 349.0 351 56.7
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 5.7e-94 348.6 359 57.4
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 8.2e-93 344.7 402 55.7
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 2.0e-91 340.1 357 57.4
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 3.5e-91 339.3 357 58.3
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 5.9e-91 338.6 358 58.1
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 7.7e-91 338.2 365 54.2
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 1.3e-90 337.4 359 58.2
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.3e-90 337.4 359 56.0
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 1.7e-90 337.0 338 60.7
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 1.7e-90 337.0 360 58.9
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 2.9e-90 336.3 356 56.5
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 5.0e-90 335.5 362 58.3
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.9e-89 333.6 357 55.7
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 3.2e-89 332.8 358 56.1
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 3.2e-89 332.8 357 56.6
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 7.2e-89 331.6 358 57.8
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 1.2e-88 330.9 343 61.2
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 3.6e-88 329.3 362 57.2
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 3.6e-88 329.3 360 56.9
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 6.1e-88 328.6 358 55.6
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.4e-87 327.4 357 55.5
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 4.0e-87 325.9 360 53.6
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 5.2e-87 325.5 357 56.0
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 5.2e-87 325.5 362 56.4
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 8.8e-87 324.7 359 56.8
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 1.5e-86 323.9 359 55.7
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 2.6e-86 323.2 335 60.0
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 4.8e-85 318.9 359 54.6
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.8e-84 317.0 360 53.3
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.2e-83 314.3 360 56.1
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 3.5e-83 312.8 362 53.0
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 4.5e-83 312.4 357 55.2
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 3.8e-82 309.3 366 51.9
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 1.5e-81 307.4 354 54.0
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 1.5e-81 307.4 354 54.0
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 1.5e-81 307.4 271 64.9
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 3.2e-81 306.2 264 70.5
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 5.5e-81 305.4 357 54.6
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 7.2e-81 305.1 357 54.6
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 9.4e-81 304.7 357 53.8
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 1.2e-80 304.3 358 54.2
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 1.2e-80 304.3 291 65.3
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 1.6e-80 303.9 357 54.3
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 2.1e-80 303.5 357 53.8
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 2.1e-80 303.5 358 54.7
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 4.7e-80 302.4 359 52.6
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.4e-79 300.8 360 54.7
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 2.3e-79 300.1 359 54.9
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 1.5e-78 297.4 296 61.5
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 3.4e-78 296.2 357 52.7
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 3.4e-78 296.2 357 52.7
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 4.4e-78 295.8 357 51.0
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 2.8e-77 293.1 357 52.7
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 3.7e-77 292.7 357 52.9
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 7.7e-75 285.0 357 49.3
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 1.0e-74 284.6 341 50.7
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 2.3e-74 283.5 354 49.7
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 6.8e-71 271.9 340 48.5
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 9.8e-70 268.1 256 58.6
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 2.4e-68 263.5 357 50.7
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 4.6e-59 232.6 220 61.8
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 1.1e-52 211.5 348 43.4
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 3.9e-50 203.0 357 41.7
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 1.3e-42 177.9 352 39.8
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 3.6e-32 143.3 385 31.2
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 5.8e-30 136.0 251 38.2
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 1.1e-25 121.7 166 50.6
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 1.1e-20 105.1 238 34.9
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 9.3e-20 102.1 170 41.8
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.3e-18 97.4 148 43.2
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 8.7e-18 95.5 101 53.5
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 2.2e-13 80.9 153 37.9
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 1.6e-11 74.7 186 30.1
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 5.7e-09 66.2 413 22.3
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 3.1e-07 60.5 42 73.8


User provided reference genes

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