Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.0e-238 829.7 423 100.0
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.0e-206 723.4 368 99.5
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.1e-195 685.3 368 95.1
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.0e-192 674.1 368 93.8
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.1e-184 650.2 368 91.8
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.1e-176 620.9 372 88.4
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.4e-152 542.7 402 75.9
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.5e-152 541.6 368 80.2
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 2.2e-145 519.6 402 69.9
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 3.3e-141 505.8 407 67.1
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.5e-138 496.9 378 73.8
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.4e-136 490.3 399 67.7
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.1e-135 486.5 402 64.9
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 6.7e-134 481.5 402 64.7
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 9.7e-133 477.6 402 64.2
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.7e-132 476.9 364 73.4
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 4.8e-132 475.3 362 71.0
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 4.8e-132 475.3 402 63.7
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.8e-131 473.4 407 60.7
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 2.4e-131 473.0 400 63.8
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 3.1e-131 472.6 362 70.7
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 3.4e-130 469.2 402 62.9
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 5.9e-130 468.4 496 54.8
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 7.2e-128 461.5 400 62.8
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 4.7e-127 458.8 407 60.7
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 1.0e-126 457.6 402 61.2
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 1.1e-125 454.1 402 61.4
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 9.7e-125 451.1 402 61.9
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 2.2e-124 449.9 401 60.8
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 4.8e-124 448.7 402 61.2
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 5.3e-123 445.3 399 60.7
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 9.1e-123 444.5 402 59.5
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.3e-121 440.7 399 61.2
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 3.8e-121 439.1 402 59.2
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 3.8e-121 439.1 366 64.8
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.6e-119 433.7 366 64.5
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 1.4e-118 430.6 362 65.7
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.4e-118 430.6 431 55.2
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 1.8e-118 430.3 369 62.9
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 3.9e-118 429.1 396 58.3
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 5.2e-118 428.7 407 59.2
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 2.0e-117 426.8 400 55.8
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 3.3e-117 426.0 399 58.1
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 4.4e-117 425.6 400 56.0
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 7.4e-117 424.9 402 57.0
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 7.4e-117 424.9 399 57.9
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.3e-116 424.1 431 53.6
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 1.3e-116 424.1 400 55.2
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.7e-116 423.7 400 58.5
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.7e-116 423.7 407 55.5
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 2.8e-116 422.9 402 57.7
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 3.7e-116 422.5 402 57.7
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 2.4e-115 419.9 402 58.5
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 7.0e-115 418.3 402 57.0
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 1.6e-114 417.2 403 55.8
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 2.6e-114 416.4 367 61.3
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 3.5e-114 416.0 402 55.2
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 4.5e-114 415.6 400 55.8
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 4.5e-114 415.6 403 55.6
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 1.7e-113 413.7 407 54.3
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.7e-113 413.7 450 51.6
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 5.0e-113 412.1 399 56.1
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 1.5e-112 410.6 400 53.5
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 2.5e-112 409.8 399 56.4
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 3.2e-112 409.5 399 55.1
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 4.2e-112 409.1 368 59.0
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 7.2e-112 408.3 399 54.9
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 1.2e-111 407.5 402 55.7
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 1.2e-111 407.5 405 56.5
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 2.7e-111 406.4 400 57.5
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 3.6e-111 406.0 390 57.9
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 3.6e-111 406.0 399 55.9
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 8.0e-111 404.8 400 57.0
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 8.0e-111 404.8 399 56.4
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 5.2e-110 402.1 402 55.2
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 1.5e-109 400.6 400 55.5
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 2.0e-109 400.2 402 54.7
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 9.7e-109 397.9 402 55.0
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 2.8e-108 396.4 369 57.7
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 4.8e-108 395.6 400 55.2
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 8.2e-108 394.8 402 54.5
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 1.1e-107 394.4 400 54.0
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 1.8e-107 393.7 402 55.0
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 1.8e-107 393.7 399 54.4
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 2.4e-107 393.3 400 53.8
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 5.3e-107 392.1 407 53.3
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 7.0e-107 391.7 366 57.7
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 5.9e-106 388.7 399 52.4
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 7.7e-106 388.3 369 55.8
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 1.0e-105 387.9 399 52.4
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 1.0e-105 387.9 399 52.6
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 1.7e-105 387.1 399 52.6
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 4.2e-104 382.5 362 57.2
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 2.1e-103 380.2 406 53.2
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 4.7e-103 379.0 402 53.2
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.4e-102 377.5 408 52.0
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 3.7e-100 369.4 398 53.0
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 4.1e-99 365.9 405 51.9
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 9.1e-99 364.8 434 49.1
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 4.5e-98 362.5 434 48.8
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 1.4e-94 350.9 402 50.5
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 3.0e-94 349.7 402 50.2
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.7e-93 345.5 408 49.3
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 4.1e-91 339.3 400 50.2
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 4.1e-91 339.3 386 50.5
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 5.4e-91 339.0 361 50.7
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 7.0e-91 338.6 266 66.5
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 3.5e-90 336.3 365 49.9
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 1.3e-89 334.3 372 51.1
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 3.8e-89 332.8 402 48.8
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 3.3e-88 329.7 368 50.5
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 4.7e-87 325.9 360 48.9
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.2e-85 321.2 414 44.7
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 4.4e-85 319.3 318 52.5
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 1.7e-84 317.4 266 62.4
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 2.5e-80 303.5 332 52.4
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 4.9e-76 289.3 402 44.8
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 2.9e-68 263.5 243 57.2
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 2.2e-60 237.3 230 54.8
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 8.4e-60 235.3 222 58.1
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 6.0e-58 229.2 248 52.4
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.5e-56 223.8 262 51.5
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 4.2e-51 206.5 200 57.5
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 8.7e-49 198.7 229 49.3
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 2.0e-45 187.6 196 51.0
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 8.4e-44 182.2 357 31.9
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 5.4e-43 179.5 412 32.8
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 1.8e-41 174.5 356 30.9
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.9e-35 154.5 135 64.4
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 4.0e-30 136.7 155 51.6
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 1.5e-29 134.8 174 46.0
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 3.4e-29 133.7 239 30.5
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.5e-27 127.5 391 26.3
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 4.2e-27 126.7 89 70.8
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 4.2e-27 126.7 141 47.5
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 1.4e-22 111.7 148 45.9
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 2.0e-21 107.8 289 26.6
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.4e-19 101.7 121 48.8
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 3.3e-16 90.5 100 49.0
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 5.0e-12 76.6 85 44.7
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.2e-10 72.0 65 53.8
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 1.0e-09 68.9 90 38.9
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.1e-08 65.5 43 67.4
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.1e-08 65.5 43 67.4
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 4.4e-08 63.5 55 54.5
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 7.4e-08 62.8 68 47.1
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 7.4e-08 62.8 68 47.1
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 8.2e-07 59.3 68 45.6
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 8.2e-07 59.3 37 75.7
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 1.4e-06 58.5 93 39.8


User provided reference genes

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