Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020436 Camellia sinensis var. sinensis HOM05D006984 ORTHO05D008773 1.7e-145 519.2 252 100.0
Actinidia17077 Actinidia chinensis HOM05D006984 ORTHO05D008773 6.9e-102 374.4 244 74.6
Dinv13757 Davidia involucrata HOM05D006984 ORTHO05D008773 1.1e-94 350.5 249 71.1
vmacro21767 Vaccinium macrocarpon HOM05D006984 ORTHO05D008773 2.9e-92 342.4 241 72.2
Rhsim06G0003200 Rhododendron simsii HOM05D006984 ORTHO05D008773 1.4e-83 313.5 368 50.0
Nn6g31626 Nelumbo nucifera HOM05D006984 ORTHO05D008773 1.0e-81 307.4 223 65.5
HanXRQChr09g0241901 Helianthus annuus HOM05D006984 ORTHO05D008773 3.0e-81 305.8 242 63.2
Oeu035863.2 Olea europaea HOM05D006984 ORTHO05D008773 3.9e-81 305.4 233 63.1
MSTRG.24516 Avicennia marina HOM05D006984 ORTHO05D008773 5.1e-81 305.1 238 64.3
GSVIVG01013427001 Vitis vinifera HOM05D006984 ORTHO05D008773 2.5e-80 302.8 218 64.2
CiPaw.07G133500 Carya illinoinensis HOM05D006984 ORTHO05D008773 3.3e-80 302.4 217 63.1
Cpa.g.sc26.14 Carica papaya HOM05D006984 ORTHO05D008773 4.3e-80 302.0 226 63.3
Solyc12g094720.3 Solanum lycopersicum HOM05D006984 ORTHO05D008773 9.7e-80 300.8 249 61.0
PGSC0003DMG400029399 Solanum tuberosum HOM05D006984 ORTHO05D008773 2.8e-79 299.3 246 61.0
Atru.chr13.60 Acer truncatum HOM05D006984 ORTHO05D008773 4.8e-79 298.5 227 62.1
QL02p015743 Quercus lobata HOM05D006984 ORTHO05D008773 4.8e-79 298.5 214 63.6
Sopen12g031620 Solanum pennellii HOM05D006984 ORTHO05D008773 4.8e-79 298.5 215 66.5
Migut.N02987 Erythranthe guttata HOM05D006984 ORTHO05D008773 8.2e-79 297.7 231 63.6
Lsat_1_v5_gn_9_48361 Lactuca sativa HOM05D006984 ORTHO05D008773 1.8e-78 296.6 252 60.3
TAR628G1538 Trochodendron aralioides HOM05D006984 ORTHO05D008773 1.8e-78 296.6 218 65.6
Peaxi162Scf00064g01321 Petunia axillaris HOM05D006984 ORTHO05D008773 5.3e-78 295.0 215 65.1
Sabra05G0198700 Salix brachista HOM05D006984 ORTHO05D008773 6.9e-78 294.7 249 59.4
CAN.G208.41 Capsicum annuum HOM05D006984 ORTHO05D008773 4.5e-77 292.0 215 64.7
ECA232G4329 Erigeron canadensis HOM05D006984 ORTHO05D008773 2.2e-76 289.7 245 59.2
Hma1.2p1_0489F.1_g164090 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 2.2e-76 289.7 186 74.7
Cc10_g00260 Coffea canephora HOM05D006984 ORTHO05D008773 1.1e-75 287.3 206 68.4
Thecc.08G099800 Theobroma cacao HOM05D006984 ORTHO05D008773 5.5e-75 285.0 195 69.2
Manes.05G127800 Manihot esculenta HOM05D006984 ORTHO05D008773 7.2e-75 284.6 233 63.1
Potri.005G256600 Populus trichocarpa HOM05D006984 ORTHO05D008773 3.6e-74 282.3 181 74.6
AUR62024096 Chenopodium quinoa HOM05D006984 ORTHO05D008773 7.9e-74 281.2 199 64.8
AUR62035170 Chenopodium quinoa HOM05D006984 ORTHO05D008773 2.3e-73 279.6 199 64.8
MD16G1283100 Malus domestica HOM05D006984 ORTHO05D008773 3.0e-73 279.3 262 54.6
Lj3P797T41 Lonicera japonica HOM05D006984 ORTHO05D008773 6.7e-73 278.1 167 77.2
TWI56G0056 Tripterygium wilfordii HOM05D006984 ORTHO05D008773 6.7e-73 278.1 199 66.3
Cfa014138 Carpinus fangiana HOM05D006984 ORTHO05D008773 8.8e-73 277.7 216 62.5
Duzib116G0393 Durio zibethinus HOM05D006984 ORTHO05D008773 2.5e-72 276.2 196 66.8
Sc15g0004070 Simmondsia chinensis HOM05D006984 ORTHO05D008773 9.7e-72 274.2 164 75.6
Ciclev10001894m.g Citrus clementina HOM05D006984 ORTHO05D008773 2.2e-71 273.1 186 68.8
Lj4A811G120 Lonicera japonica HOM05D006984 ORTHO05D008773 2.2e-71 273.1 160 78.8
Nitab4.5_0000407g0010 Nicotiana tabacum HOM05D006984 ORTHO05D008773 4.8e-71 271.9 181 68.5
Lj1g0018204 Lotus japonicus HOM05D006984 ORTHO05D008773 1.8e-70 270.0 257 54.1
CsaV3_6G035930 Cucumis sativus L. HOM05D006984 ORTHO05D008773 2.4e-70 269.6 250 54.8
RcHm_v2.0_Chr7g0216691 Rosa chinensis HOM05D006984 ORTHO05D008773 2.4e-70 269.6 223 60.5
FAN18G2056 Fragaria x ananassa HOM05D006984 ORTHO05D008773 3.1e-70 269.2 223 61.4
SGA_v2.0_scaffold220G42646 Striga asiatica HOM05D006984 ORTHO05D008773 3.1e-70 269.2 194 66.0
EL10Ac1g01871 Beta vulgaris HOM05D006984 ORTHO05D008773 4.1e-70 268.9 206 62.6
Gorai.002G221600 Gossypium raimondii HOM05D006984 ORTHO05D008773 4.1e-70 268.9 251 55.8
Prupe.5G005500 Prunus persica HOM05D006984 ORTHO05D008773 4.1e-70 268.9 219 60.7
unitig_22.g5726 Utricularia gibba HOM05D006984 ORTHO05D008773 5.3e-70 268.5 192 68.8
Gohir.D01G180900 Gossypium hirsutum HOM05D006984 ORTHO05D008773 6.9e-70 268.1 251 55.8
Gohir.A01G188600 Gossypium hirsutum HOM05D006984 ORTHO05D008773 9.1e-70 267.7 251 55.4
MBI04_g31208_MAGBIO Magnolia biondii HOM05D006984 ORTHO05D008773 1.2e-69 267.3 219 60.7
FvH4_5g26100 Fragaria vesca HOM05D006984 ORTHO05D008773 2.0e-69 266.5 224 60.7
THA.LOC104813736 Tarenaya hassleriana HOM05D006984 ORTHO05D008773 3.4e-69 265.8 239 54.8
Hund01834 Selenicereus undatus HOM05D006984 ORTHO05D008773 1.3e-68 263.8 184 66.8
Aa31LG4G6540 Aethionema arabicum HOM05D006984 ORTHO05D008773 2.2e-68 263.1 252 51.2
VMungo1309G1928 Vigna mungo HOM05D006984 ORTHO05D008773 2.2e-68 263.1 255 54.9
Phvul.009G008400 Phaseolus vulgaris HOM05D006984 ORTHO05D008773 6.5e-68 261.5 209 60.8
Haze_22863 Corylus avellana HOM05D006984 ORTHO05D008773 1.1e-67 260.8 232 55.2
BcaC08g47243 Brassica carinata HOM05D006984 ORTHO05D008773 1.9e-67 260.0 207 60.9
Eucgr.F01822 Eucalyptus grandis HOM05D006984 ORTHO05D008773 1.9e-67 260.0 214 57.9
AL2G36590 Arabidopsis lyrata HOM05D006984 ORTHO05D008773 2.5e-67 259.6 192 62.0
PSO541G1597 Papaver somniferum HOM05D006984 ORTHO05D008773 3.2e-67 259.2 259 51.7
MELO3C026518.2 Cucumis melo HOM05D006984 ORTHO05D008773 4.2e-67 258.8 193 62.7
AT1G76450 Arabidopsis thaliana HOM05D006984 ORTHO05D008773 5.5e-67 258.5 192 62.0
Sp5g31620 Schrenkiella parvula HOM05D006984 ORTHO05D008773 5.5e-67 258.5 192 61.5
BcaC08g47152 Brassica carinata HOM05D006984 ORTHO05D008773 7.2e-67 258.1 196 63.3
Sed0024892 Sechium edule HOM05D006984 ORTHO05D008773 7.2e-67 258.1 232 53.4
CDE05G2674 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 9.4e-67 257.7 193 58.5
COL.COLO4_12298 Corchorus olitorius HOM05D006984 ORTHO05D008773 2.1e-66 256.5 193 64.8
CARHR070010 Cardamine hirsuta HOM05D006984 ORTHO05D008773 3.6e-66 255.8 192 60.9
BraA07t31741Z Brassica rapa HOM05D006984 ORTHO05D008773 6.1e-66 255.0 197 62.4
Glyma.04G014500 Glycine max HOM05D006984 ORTHO05D008773 6.1e-66 255.0 207 59.4
Aqoxy6G02992 Aquilegia oxysepala HOM05D006984 ORTHO05D008773 7.9e-66 254.6 197 58.9
Glyma.06G014500 Glycine max HOM05D006984 ORTHO05D008773 1.4e-65 253.8 204 60.3
CANSAT25G0748 Cannabis sativa HOM05D006984 ORTHO05D008773 1.8e-65 253.4 253 51.8
TPR.G38185 Trifolium pratense HOM05D006984 ORTHO05D008773 2.3e-65 253.1 256 50.0
BolC6t40095H Brassica oleracea HOM05D006984 ORTHO05D008773 3.0e-65 252.7 197 60.9
Carub.0002s2337 Capsella rubella HOM05D006984 ORTHO05D008773 3.9e-65 252.3 193 60.1
CDE05G0055 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 2.0e-64 250.0 159 67.3
Lalb_Chr23g0265511 Lupinus albus HOM05D006984 ORTHO05D008773 2.0e-64 250.0 255 52.2
Psat5g008560 Pisum sativum HOM05D006984 ORTHO05D008773 3.3e-64 249.2 254 49.2
Ca_15385_v3 Cicer arietinum L. HOM05D006984 ORTHO05D008773 5.7e-64 248.4 252 50.4
FAN13G1472 Fragaria x ananassa HOM05D006984 ORTHO05D008773 7.4e-64 248.1 257 52.9
A07p42120 Brassica napus HOM05D006984 ORTHO05D008773 1.3e-63 247.3 197 60.4
ClCG08G009180 Citrullus lanatus HOM05D006984 ORTHO05D008773 1.3e-63 247.3 238 55.5
Medtr3g116110 Medicago truncatula HOM05D006984 ORTHO05D008773 1.7e-63 246.9 251 49.8
ATR0001G027 Amborella trichopoda HOM05D006984 ORTHO05D008773 4.8e-63 245.4 247 52.2
C06p50690 Brassica napus HOM05D006984 ORTHO05D008773 4.8e-63 245.4 194 60.3
Os08g0512500 Oryza sativa ssp. japonica HOM05D006984 ORTHO05D008773 8.2e-63 244.6 199 59.8
arahy.Tifrunner.gnm1.ann1.H7AW2T Arachis hypogaea HOM05D006984 ORTHO05D008773 2.6e-61 239.6 228 53.9
FAN08G1099 Fragaria x ananassa HOM05D006984 ORTHO05D008773 3.5e-61 239.2 231 55.4
arahy.Tifrunner.gnm1.ann1.QT2TB5 Arachis hypogaea HOM05D006984 ORTHO05D008773 7.7e-61 238.0 229 53.3
Thhalv10019042m.g Eutrema salsugineum HOM05D006984 ORTHO05D008773 1.0e-60 237.7 190 59.5
FAN04G1410 Fragaria x ananassa HOM05D006984 ORTHO05D008773 3.2e-59 232.6 230 54.8
Nitab4.5_0003423g0020 Nicotiana tabacum HOM05D006984 ORTHO05D008773 2.1e-58 229.9 209 56.5
PGR083G2821 Punica granatum HOM05D006984 ORTHO05D008773 8.8e-57 224.6 198 56.6
Hma1.2p1_0489F.1_g164100 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 2.0e-56 223.4 120 86.7
Mapoly0008s0218 Marchantia polymorpha HOM05D006984 ORTHO05D008773 8.2e-55 218.0 197 49.7
Pp3c4_15070 Physcomitrium patens HOM05D006984 ORTHO05D008773 9.1e-54 214.5 192 53.1
AagrBONN_evm.TU.Sc2ySwM_117.1863 Anthoceros agrestis HOM05D006984 ORTHO05D008773 1.8e-46 190.3 200 47.5
Ah.11g041950 Amaranthus hybridus HOM05D006984 ORTHO05D008773 8.8e-41 171.4 137 62.8
CBR_g51937 Chara braunii HOM05D006984 ORTHO05D008773 9.1e-38 161.4 160 48.1
SMO245G0004 Selaginella moellendorffii HOM05D006984 ORTHO05D008773 1.3e-36 157.5 174 39.7
Zm00001eb035340 Zea mays HOM05D006984 ORTHO05D008773 2.1e-34 150.2 135 56.3
PGSC0003DMG400008742 Solanum tuberosum HOM05D006984 ORTHO05D008773 1.7e-28 130.6 106 58.5
PGSC0003DMG400021762 Solanum tuberosum HOM05D006984 ORTHO05D008773 1.4e-25 120.9 90 65.6
PRCOL_00004638 Prasinoderma coloniale HOM05D006984 ORTHO05D008773 3.4e-24 116.3 175 37.1
Cre10.g446350 Chlamydomonas reinhardtii HOM05D006984 ORTHO05D008773 6.4e-23 112.1 258 31.8
MCO13G452 Micromonas commoda HOM05D006984 ORTHO05D008773 1.2e-21 107.8 173 34.1
Medtr6g034285 Medicago truncatula HOM05D000394 ORTHO05D008773 4.6e-21 105.9 66 66.7
Sopen12g026780 Solanum pennellii HOM05D000004 ORTHO05D000002 5.0e-20 102.4 77 63.6
Psat7g136640 Pisum sativum HOM05D006984 ORTHO05D008773 1.1e-11 74.7 108 41.7
HPP92_015474 Vanilla planifolia HOM05D006984 ORTHO05D008773 8.9e-09 65.1 51 49.0
Psat6g152440 Pisum sativum HOM05D006984 ORTHO05D000789 3.7e-07 59.7 38 73.7
Psat6g152480 Pisum sativum HOM05D006984 ORTHO05D008773 4.1e-06 56.2 32 71.9


User provided reference genes

Program Settings