Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020432 Camellia sinensis var. sinensis HOM05D005301 ORTHO05D006433 4.0e-32 140.6 61 100.0
Lj9A475G63 Lonicera japonica HOM05D005301 ORTHO05D006433 2.1e-12 75.1 36 83.3
vmacro19243 Vaccinium macrocarpon HOM05D005301 ORTHO05D006433 7.9e-12 73.2 32 90.6
CAN.G352.5 Capsicum annuum HOM05D005301 ORTHO05D006433 1.0e-11 72.8 29 100.0
Nitab4.5_0010042g0030 Nicotiana tabacum HOM05D005301 ORTHO05D006433 1.0e-11 72.8 29 100.0
Peaxi162Scf00089g00721 Petunia axillaris HOM05D005301 ORTHO05D006433 1.0e-11 72.8 29 100.0
SalBow4G2023 Salvia bowleyana HOM05D005301 ORTHO05D006433 1.0e-11 72.8 29 100.0
PGSC0003DMG400015238 Solanum tuberosum HOM05D005301 ORTHO05D006433 1.0e-11 72.8 29 100.0
SGA_v2.0_scaffold102G29851 Striga asiatica HOM05D005301 ORTHO05D006433 1.0e-11 72.8 29 100.0
Actinidia16194 Actinidia chinensis HOM05D005301 ORTHO05D006433 2.3e-11 71.6 29 96.6
AUR62025732 Chenopodium quinoa HOM05D005301 ORTHO05D006433 2.3e-11 71.6 34 85.3
Cc04_g10470 Coffea canephora HOM05D005301 ORTHO05D006433 2.3e-11 71.6 29 96.6
Dinv11108 Davidia involucrata HOM05D005301 ORTHO05D006433 2.3e-11 71.6 29 96.6
ECA232G2312 Erigeron canadensis HOM05D005301 ORTHO05D006433 2.3e-11 71.6 29 96.6
Migut.I00257 Erythranthe guttata HOM05D005301 ORTHO05D006433 2.3e-11 71.6 29 96.6
HanXRQChr09g0272861 Helianthus annuus HOM05D005301 ORTHO05D006433 2.3e-11 71.6 29 96.6
Lsat_1_v5_gn_4_78900 Lactuca sativa HOM05D005301 ORTHO05D006433 2.3e-11 71.6 29 96.6
Nitab4.5_0003282g0130 Nicotiana tabacum HOM05D005301 ORTHO05D006433 3.0e-11 71.2 29 96.6
Solyc03g111390.4 Solanum lycopersicum HOM05D005301 ORTHO05D006433 3.0e-11 71.2 29 96.6
Sopen03g030520 Solanum pennellii HOM05D005301 ORTHO05D006433 3.0e-11 71.2 29 96.6
Oeu011576.1 Olea europaea HOM05D005301 ORTHO05D006433 6.7e-11 70.1 29 93.1
CsaV3_1G000790 Cucumis sativus L. HOM05D005301 ORTHO05D006433 8.8e-11 69.7 29 96.6
GSVIVG01007548001 Vitis vinifera HOM05D005301 ORTHO05D006433 8.8e-11 69.7 29 96.6
EL10Ac7g18070 Beta vulgaris HOM05D005301 ORTHO05D006433 1.1e-10 69.3 29 96.6
AUR62001274 Chenopodium quinoa HOM05D005301 ORTHO05D006433 1.1e-10 69.3 30 93.3
Hund05643 Selenicereus undatus HOM05D005301 ORTHO05D006433 1.1e-10 69.3 29 96.6
Sc22g0004050 Simmondsia chinensis HOM05D005301 ORTHO05D006433 1.1e-10 69.3 29 96.6
ClCG06G017670 Citrullus lanatus HOM05D005301 ORTHO05D006433 1.5e-10 68.9 29 93.1
Atru.chr9.1005 Acer truncatum HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
Aqoxy5G03589 Aquilegia oxysepala HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
CANSAT80G2324 Cannabis sativa HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
Cpa.g.sc52.37 Carica papaya HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
Cfa018895 Carpinus fangiana HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
CiPaw.11G012400 Carya illinoinensis HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
Ciclev10019136m.g Citrus clementina HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
Haze_07279 Corylus avellana HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
Duzib205G0739 Durio zibethinus HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
FvH4_5g07300 Fragaria vesca HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
FAN04G2720 Fragaria x ananassa HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
FAN08G2537 Fragaria x ananassa HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
FAN13G0064 Fragaria x ananassa HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
FAN18G2536 Fragaria x ananassa HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
Glyma.04G192600 Glycine max HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
Glyma.06G173200 Glycine max HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
Gohir.A12G188000 Gossypium hirsutum HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
Gohir.D12G190800 Gossypium hirsutum HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
Gorai.008G204700 Gossypium raimondii HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
Manes.06G114900 Manihot esculenta HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
THA.LOC104825004 Tarenaya hassleriana HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
Thecc.03G122400 Theobroma cacao HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
TAR374G1436 Trochodendron aralioides HOM05D005301 ORTHO05D006433 2.0e-10 68.6 29 93.1
Lj1g0016804 Lotus japonicus HOM05D005301 ORTHO05D006433 3.3e-10 67.8 29 89.7
Nn4g22465 Nelumbo nucifera HOM05D005301 ORTHO05D006433 3.3e-10 67.8 29 89.7
PSO063G0990 Papaver somniferum HOM05D005301 ORTHO05D006433 3.3e-10 67.8 29 89.7
PSO782G4848 Papaver somniferum HOM05D005301 ORTHO05D006433 3.3e-10 67.8 29 89.7
Sed0013046 Sechium edule HOM05D005301 ORTHO05D006433 3.3e-10 67.8 29 89.7
AL8G24360 Arabidopsis lyrata HOM05D005301 ORTHO05D006433 4.4e-10 67.4 29 89.7
AT5G50310 Arabidopsis thaliana HOM05D005301 ORTHO05D006433 4.4e-10 67.4 29 89.7
BcaB01g02903 Brassica carinata HOM05D005301 ORTHO05D006433 4.4e-10 67.4 29 89.7
BcaC01g04819 Brassica carinata HOM05D005301 ORTHO05D006433 4.4e-10 67.4 29 89.7
BcaC01g04820 Brassica carinata HOM05D005301 ORTHO05D006433 4.4e-10 67.4 29 89.7
A03p27760 Brassica napus HOM05D005301 ORTHO05D006433 4.4e-10 67.4 29 89.7
C03p33480 Brassica napus HOM05D005301 ORTHO05D006433 4.4e-10 67.4 29 89.7
BolC3t15670H Brassica oleracea HOM05D005301 ORTHO05D006433 4.4e-10 67.4 29 89.7
BraA03t11987Z Brassica rapa HOM05D005301 ORTHO05D006433 4.4e-10 67.4 29 89.7
CARHR258240 Cardamine hirsuta HOM05D005301 ORTHO05D006433 4.4e-10 67.4 29 89.7
Thhalv10012907m.g Eutrema salsugineum HOM05D005301 ORTHO05D006433 4.4e-10 67.4 29 89.7
Lalb_Chr11g0069731 Lupinus albus HOM05D005301 ORTHO05D006433 4.4e-10 67.4 29 89.7
QL04p021669 Quercus lobata HOM05D005301 ORTHO05D006433 4.4e-10 67.4 29 89.7
QL10p005311 Quercus lobata HOM05D005301 ORTHO05D006433 4.4e-10 67.4 29 89.7
arahy.Tifrunner.gnm1.ann1.11HRG0 Arachis hypogaea HOM05D005301 ORTHO05D006433 5.7e-10 67.0 29 89.7
Eucgr.B00150 Eucalyptus grandis HOM05D005301 ORTHO05D006433 5.7e-10 67.0 29 89.7
Eucgr.L01339 Eucalyptus grandis HOM05D005301 ORTHO05D006433 5.7e-10 67.0 29 89.7
Medtr1g107265 Medicago truncatula HOM05D005301 ORTHO05D006433 5.7e-10 67.0 29 89.7
Psat6g217880 Pisum sativum HOM05D005301 ORTHO05D006433 5.7e-10 67.0 29 89.7
Carub.0008s1035 Capsella rubella HOM05D005301 ORTHO05D006433 9.7e-10 66.2 29 86.2
Potri.015G090100 Populus trichocarpa HOM05D005301 ORTHO05D006433 9.7e-10 66.2 29 89.7
Sabra15G0112300 Salix brachista HOM05D005301 ORTHO05D006433 9.7e-10 66.2 29 89.7
Eucgr.B00154 Eucalyptus grandis HOM05D005301 ORTHO05D006433 1.3e-09 65.9 29 86.2
MD06G1157400 Malus domestica HOM05D005301 ORTHO05D006433 2.8e-09 64.7 29 89.7
MD14G1164000 Malus domestica HOM05D005301 ORTHO05D006433 2.8e-09 64.7 29 89.7
Phvul.009G169100 Phaseolus vulgaris HOM05D005301 ORTHO05D006433 2.8e-09 64.7 29 89.7
Prupe.5G157400 Prunus persica HOM05D005301 ORTHO05D006433 2.8e-09 64.7 29 89.7
TWI39G1189 Tripterygium wilfordii HOM05D005301 ORTHO05D006433 2.8e-09 64.7 29 86.2
Aa31LG3G5920 Aethionema arabicum HOM05D005301 ORTHO05D006433 3.7e-09 64.3 29 86.2
CAN.G352.12 Capsicum annuum HOM05D005301 ORTHO05D006433 3.7e-09 64.3 40 67.5
Sp6g12390 Schrenkiella parvula HOM05D005301 ORTHO05D006433 3.7e-09 64.3 29 86.2
RcHm_v2.0_Chr7g0191331 Rosa chinensis HOM05D005301 ORTHO05D006433 1.1e-08 62.8 29 86.2
HPP92_004584 Vanilla planifolia HOM05D005301 ORTHO05D006433 1.8e-08 62.0 29 82.8
PGR083G1269 Punica granatum HOM05D005301 ORTHO05D006433 2.4e-08 61.6 29 86.2
CDE02G1357 Ceratophyllum demersum HOM05D005301 ORTHO05D006433 4.1e-08 60.8 29 82.8
Zm00001eb079290 Zea mays HOM05D005301 ORTHO05D006433 5.3e-08 60.5 29 82.8
Os04g0483600 Oryza sativa ssp. japonica HOM05D005301 ORTHO05D006433 9.1e-08 59.7 29 82.8
MBI06_g16660_MAGBIO Magnolia biondii HOM05D005301 ORTHO05D006433 1.2e-07 59.3 29 79.3
ATR0824G115 Amborella trichopoda HOM05D004726 ORTHO05D005986 2.0e-07 58.5 29 75.9
arahy.Tifrunner.gnm1.ann1.86E75A Arachis hypogaea HOM05D005301 ORTHO05D006433 2.6e-07 58.2 26 88.5
SEGI_14104 Sequoiadendron giganteum HOM05D005301 ORTHO05D006433 7.7e-07 56.6 29 79.3
SEGI_22253 Sequoiadendron giganteum HOM05D005301 ORTHO05D006433 7.7e-07 56.6 29 79.3
Mapoly0001s0540 Marchantia polymorpha HOM05D005301 ORTHO05D006433 1.7e-06 55.5 29 75.9
CBR_g40809 Chara braunii HOM05D005301 ORTHO05D006433 6.5e-06 53.5 29 72.4


User provided reference genes

Program Settings