Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 1.5e-37 159.1 81 100.0
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 1.1e-13 79.7 108 48.1
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 3.3e-13 78.2 110 47.3
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 1.2e-12 76.3 110 42.7
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 6.2e-12 73.9 109 44.0
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 8.1e-12 73.6 110 45.5
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 1.4e-11 72.8 110 46.4
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.8e-11 72.4 108 43.5
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 8.9e-11 70.1 109 41.3
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.5e-10 69.3 108 43.5
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 2.6e-10 68.6 105 41.9
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 2.6e-10 68.6 110 44.5
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.6e-10 68.6 96 46.9
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 2.6e-10 68.6 106 42.5
AUR62023074 Chenopodium quinoa HOM05D000040 ORTHO05D000267 4.4e-10 67.8 77 51.9
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 4.4e-10 67.8 107 41.1
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 5.8e-10 67.4 107 37.4
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 7.5e-10 67.0 110 42.7
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 7.5e-10 67.0 110 41.8
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 7.5e-10 67.0 107 41.1
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 7.5e-10 67.0 106 38.7
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 1.7e-09 65.9 108 39.8
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.7e-09 65.9 109 40.4
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 1.7e-09 65.9 107 40.2
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 2.2e-09 65.5 104 47.1
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 3.7e-09 64.7 105 42.9
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 3.7e-09 64.7 107 41.1
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.7e-09 64.7 116 40.5
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.7e-09 64.7 116 40.5
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 4.9e-09 64.3 106 45.3
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 4.9e-09 64.3 102 42.2
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 4.9e-09 64.3 109 45.0
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 4.9e-09 64.3 112 38.4
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 8.3e-09 63.5 106 43.4
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 1.1e-08 63.2 118 43.2
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 1.4e-08 62.8 37 78.4
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.4e-08 62.8 109 44.0
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.4e-08 62.8 109 44.0
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 1.4e-08 62.8 109 44.0
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 2.4e-08 62.0 97 48.5
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 3.2e-08 61.6 70 54.3
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 3.2e-08 61.6 109 39.4
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 4.1e-08 61.2 109 40.4
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 4.1e-08 61.2 107 40.2
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 4.1e-08 61.2 107 40.2
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 5.4e-08 60.8 114 36.8
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 5.4e-08 60.8 113 37.2
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 5.4e-08 60.8 107 39.3
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 5.4e-08 60.8 108 44.4
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 7.1e-08 60.5 105 40.0
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 7.1e-08 60.5 110 40.0
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 7.1e-08 60.5 109 40.4
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 9.2e-08 60.1 106 41.5
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 9.2e-08 60.1 108 38.0
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.2e-07 59.7 106 43.4
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 1.2e-07 59.7 110 41.8
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 2.1e-07 58.9 37 75.7
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 2.7e-07 58.5 108 38.9
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 2.7e-07 58.5 37 73.0
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 3.5e-07 58.2 115 38.3
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 3.5e-07 58.2 111 39.6
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 4.6e-07 57.8 75 42.7
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 4.6e-07 57.8 111 38.7
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 4.6e-07 57.8 107 38.3
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 4.6e-07 57.8 111 37.8
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 4.6e-07 57.8 71 52.1
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 6.0e-07 57.4 36 77.8
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 6.0e-07 57.4 108 39.8
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 6.0e-07 57.4 107 38.3
Zm00001eb245320 Zea mays HOM05D004268 ORTHO05D004958 7.8e-07 57.0 68 47.1
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 1.0e-06 56.6 106 40.6
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.0e-06 56.6 81 46.9
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 1.0e-06 56.6 113 38.9
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 1.0e-06 56.6 57 50.9
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 1.3e-06 56.2 34 76.5
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 1.3e-06 56.2 107 39.3
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.3e-06 56.2 111 37.8
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 1.3e-06 56.2 33 72.7
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 1.3e-06 56.2 111 37.8
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.3e-06 55.5 38 76.3
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.3e-06 55.5 110 37.3
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.3e-06 55.5 110 37.3
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 2.3e-06 55.5 105 42.9
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 3.0e-06 55.1 107 40.2
Prupe.2G015200 Prunus persica HOM05D004268 ORTHO05D004958 3.0e-06 55.1 98 42.9
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 3.9e-06 54.7 111 36.0
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.9e-06 54.7 111 36.0
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.9e-06 54.7 111 36.0
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 3.9e-06 54.7 105 41.9
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 5.1e-06 54.3 103 38.8
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 5.1e-06 54.3 111 35.1
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 5.1e-06 54.3 112 36.6
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 5.1e-06 54.3 109 35.8
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 5.1e-06 54.3 40 65.0
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 5.1e-06 54.3 88 39.8
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 6.6e-06 53.9 111 36.9
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 6.6e-06 53.9 104 41.3
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 6.6e-06 53.9 83 38.6
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 6.6e-06 53.9 57 50.9
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 8.6e-06 53.5 111 36.0
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 8.6e-06 53.5 104 37.5


User provided reference genes

Program Settings