Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020422 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 4.8e-185 651.0 318 100.0
CSS0028068 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 1.2e-111 407.1 318 68.9
Actinidia17784 Actinidia chinensis HOM05D006715 ORTHO05D008345 2.3e-110 402.9 282 71.3
Rhsim05G0181200 Rhododendron simsii HOM05D006715 ORTHO05D008345 2.2e-105 386.3 283 68.2
vmacro20039 Vaccinium macrocarpon HOM05D006715 ORTHO05D008345 4.3e-101 372.1 289 65.1
Lj7A376T34 Lonicera japonica HOM05D006715 ORTHO05D008345 1.6e-79 300.4 273 53.8
Haze_17767 Corylus avellana HOM05D006715 ORTHO05D008345 7.9e-79 298.1 256 59.4
Cfa018312 Carpinus fangiana HOM05D006715 ORTHO05D008345 4.3e-77 292.4 256 58.2
QL09p013340 Quercus lobata HOM05D006715 ORTHO05D008345 1.0e-73 281.2 255 58.0
Prupe.8G033600 Prunus persica HOM05D006715 ORTHO05D008345 5.0e-73 278.9 257 55.6
Thecc.08G154500 Theobroma cacao HOM05D006715 ORTHO05D008345 1.4e-72 277.3 254 54.7
FvH4_2g13430 Fragaria vesca HOM05D006715 ORTHO05D008345 3.2e-72 276.2 258 55.0
FAN24G1213 Fragaria x ananassa HOM05D006715 ORTHO05D008345 1.2e-71 274.2 258 54.7
COL.COLO4_29857 Corchorus olitorius HOM05D006715 ORTHO05D008345 3.9e-70 269.2 260 51.9
RcHm_v2.0_Chr6g0275051 Rosa chinensis HOM05D006715 ORTHO05D008345 8.8e-70 268.1 292 50.3
GSVIVG01034549001 Vitis vinifera HOM05D006715 ORTHO05D008345 2.5e-69 266.5 242 56.2
MD05G1027900 Malus domestica HOM05D006715 ORTHO05D008345 5.7e-69 265.4 289 47.4
Duzib093G1010 Durio zibethinus HOM05D006715 ORTHO05D008345 1.3e-68 264.2 253 51.4
CiPaw.16G011000 Carya illinoinensis HOM05D006715 ORTHO05D008345 2.2e-68 263.5 256 53.1
RcHm_v2.0_Chr5g0050861 Rosa chinensis HOM05D006715 ORTHO05D008345 2.2e-68 263.5 292 49.3
Cpa.g.sc1027.1 Carica papaya HOM05D006715 ORTHO05D008345 2.4e-67 260.0 255 51.8
Manes.02G180601 Manihot esculenta HOM05D006715 ORTHO05D008345 9.1e-67 258.1 250 54.0
Ciclev10000601m.g Citrus clementina HOM05D006715 ORTHO05D008345 2.6e-66 256.5 253 53.4
TPR.G23114 Trifolium pratense HOM05D006715 ORTHO05D008345 1.0e-65 254.6 276 47.8
Nitab4.5_0002764g0020 Nicotiana tabacum HOM05D006715 ORTHO05D008345 6.5e-65 251.9 254 50.8
CANSAT25G3857 Cannabis sativa HOM05D006715 ORTHO05D008345 4.2e-64 249.2 303 45.9
Glyma.16G166500 Glycine max HOM05D006715 ORTHO05D008345 7.2e-64 248.4 266 50.4
TAR381G1273 Trochodendron aralioides HOM05D006715 ORTHO05D008345 9.4e-64 248.1 285 46.7
Lj2g0009741 Lotus japonicus HOM05D006715 ORTHO05D008345 2.1e-63 246.9 287 45.6
TWI34G0194 Tripterygium wilfordii HOM05D006715 ORTHO05D008345 2.1e-63 246.9 239 54.0
PGSC0003DMG400024094 Solanum tuberosum HOM05D006715 ORTHO05D008345 4.7e-63 245.7 258 47.7
Peaxi162Scf00599g00121 Petunia axillaris HOM05D006715 ORTHO05D008345 1.0e-62 244.6 265 49.8
Sopen04g027550 Solanum pennellii HOM05D006715 ORTHO05D008345 1.0e-62 244.6 285 46.0
arahy.Tifrunner.gnm1.ann1.SG7PGU Arachis hypogaea HOM05D006715 ORTHO05D008345 1.8e-62 243.8 284 48.6
Lalb_Chr01g0009561 Lupinus albus HOM05D006715 ORTHO05D008345 3.9e-62 242.7 229 55.5
CAN.G1215.10 Capsicum annuum HOM05D006715 ORTHO05D008345 5.1e-62 242.3 300 45.7
arahy.Tifrunner.gnm1.ann1.6MC3QX Arachis hypogaea HOM05D006715 ORTHO05D008345 6.7e-62 241.9 264 50.4
Gohir.A06G112504 Gossypium hirsutum HOM05D006715 ORTHO05D008345 1.3e-60 237.7 253 49.4
Gorai.010G134600 Gossypium raimondii HOM05D006715 ORTHO05D008345 1.7e-60 237.3 253 49.4
Atru.chr13.2084 Acer truncatum HOM05D006715 ORTHO05D008345 3.7e-60 236.1 283 47.0
TAR381G1110 Trochodendron aralioides HOM05D006715 ORTHO05D008345 6.3e-60 235.3 285 45.3
Medtr2g045070 Medicago truncatula HOM05D006715 ORTHO05D008345 8.2e-60 235.0 253 49.4
Phvul.004G094200 Phaseolus vulgaris HOM05D006715 ORTHO05D008345 8.2e-60 235.0 253 51.4
FAN27G2814 Fragaria x ananassa HOM05D006715 ORTHO05D008345 3.1e-59 233.0 227 53.7
Nitab4.5_0001187g0100 Nicotiana tabacum HOM05D006715 ORTHO05D008345 4.1e-59 232.6 234 53.4
Psat1g102000 Pisum sativum HOM05D006715 ORTHO05D008345 1.5e-58 230.7 253 48.6
Potri.005G193500 Populus trichocarpa HOM05D006715 ORTHO05D008345 1.0e-57 228.0 290 45.2
VMungo0464G1764 Vigna mungo HOM05D006715 ORTHO05D008345 2.2e-57 226.9 241 50.6
Hund26691 Selenicereus undatus HOM05D006715 ORTHO05D008345 1.1e-56 224.6 252 49.2
DCAR_010095 Daucus carota HOM05D006715 ORTHO05D008345 2.5e-56 223.4 301 44.5
MSTRG.24217 Avicennia marina HOM05D006715 ORTHO05D008345 5.5e-56 222.2 264 45.8
Nn5g28769 Nelumbo nucifera HOM05D006715 ORTHO05D008345 5.7e-53 212.2 257 44.4
ClCG08G002210 Citrullus lanatus HOM05D006715 ORTHO05D008345 4.8e-52 209.1 265 46.4
Eucgr.F02698 Eucalyptus grandis HOM05D006715 ORTHO05D008345 6.3e-52 208.8 244 45.1
AUR62026687 Chenopodium quinoa HOM05D006715 ORTHO05D008345 7.0e-51 205.3 284 43.0
Potri.005G193701 Populus trichocarpa HOM05D006715 ORTHO05D008345 7.0e-51 205.3 263 44.5
PSO675G4790 Papaver somniferum HOM05D006715 ORTHO05D008345 9.1e-51 204.9 258 45.3
Aqoxy5G00857 Aquilegia oxysepala HOM05D006715 ORTHO05D008345 4.5e-50 202.6 256 44.9
PGR042G1662 Punica granatum HOM05D006715 ORTHO05D008345 5.9e-50 202.2 238 47.5
SGA_v2.0_scaffold25G11186 Striga asiatica HOM05D006715 ORTHO05D008345 1.3e-49 201.1 287 40.1
MELO3C025024.2 Cucumis melo HOM05D006715 ORTHO05D008345 5.0e-49 199.1 261 46.7
AUR62040600 Chenopodium quinoa HOM05D006715 ORTHO05D008345 2.5e-48 196.8 286 40.9
Migut.N03207 Erythranthe guttata HOM05D006715 ORTHO05D008345 9.4e-48 194.9 262 44.3
EL10Ac1g01568 Beta vulgaris HOM05D006715 ORTHO05D008345 2.7e-47 193.4 252 43.7
Sed0009104 Sechium edule HOM05D006715 ORTHO05D008345 3.0e-46 189.9 266 44.0
Glyma.16G166333 Glycine max HOM05D006715 ORTHO05D008345 8.8e-46 188.3 190 50.5
Ca_26954_v3 Cicer arietinum L. HOM05D006715 ORTHO05D008345 3.7e-44 183.0 172 57.6
THA.LOC104804670 Tarenaya hassleriana HOM05D006715 ORTHO05D008345 5.3e-43 179.1 244 40.6
Dinv41067 Davidia involucrata HOM05D006715 ORTHO05D008345 2.7e-42 176.8 131 70.2
Lsat_1_v5_gn_9_41180 Lactuca sativa HOM05D006715 ORTHO05D008345 6.5e-41 172.2 226 43.8
CsaV3_6G002600 Cucumis sativus L. HOM05D006715 ORTHO05D008345 9.8e-37 158.3 207 47.3
unitig_21.g20147 Utricularia gibba HOM05D006715 ORTHO05D008345 1.3e-36 157.9 230 40.0
ECA232G1953 Erigeron canadensis HOM05D006715 ORTHO05D008345 6.3e-36 155.6 235 40.9
Thhalv10003905m.g Eutrema salsugineum HOM05D006715 ORTHO05D008345 9.1e-35 151.8 256 37.1
Aa31LG6G9940 Aethionema arabicum HOM05D006715 ORTHO05D008345 1.6e-34 151.0 233 36.9
Sp1g32410 Schrenkiella parvula HOM05D006715 ORTHO05D008345 4.5e-34 149.4 236 38.1
Carub.0001s3453 Capsella rubella HOM05D006715 ORTHO05D008345 5.9e-34 149.1 236 39.0
CDE12G0089 Ceratophyllum demersum HOM05D006715 ORTHO05D008345 2.9e-33 146.7 238 37.8
SHI09071 Sapria himalayana HOM05D006715 ORTHO05D008345 3.3e-32 143.3 250 36.0
Lj2g0026984 Lotus japonicus HOM05D006715 ORTHO05D008345 9.5e-32 141.7 137 56.9
Gohir.1Z049355 Gossypium hirsutum HOM05D006715 ORTHO05D008345 2.8e-31 140.2 135 53.3
Os04g0423600 Oryza sativa ssp. japonica HOM05D006715 ORTHO05D008345 6.1e-31 139.0 254 35.0
AL1G51600 Arabidopsis lyrata HOM05D006715 ORTHO05D008345 1.0e-30 138.3 236 35.6
ATR0820G173 Amborella trichopoda HOM05D006715 ORTHO05D008345 2.3e-30 137.1 244 36.9
SalBow6G6609 Salvia bowleyana HOM05D006715 ORTHO05D008345 2.3e-30 137.1 247 36.0
HPP92_009297 Vanilla planifolia HOM05D006715 ORTHO05D008345 3.4e-29 133.3 239 33.5
AT1G43245 Arabidopsis thaliana HOM05D006715 ORTHO05D008345 1.4e-27 127.9 231 35.1
HanXRQChr11g0320291 Helianthus annuus HOM05D006715 ORTHO05D008345 2.0e-26 124.0 229 38.4
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 2.7e-26 123.6 237 36.7
BcaB01g02294 Brassica carinata HOM05D006715 ORTHO05D008345 3.5e-26 123.2 257 35.0
BcaC04g24108 Brassica carinata HOM05D006715 ORTHO05D008345 3.5e-26 123.2 241 36.1
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 3.5e-26 123.2 241 36.1
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 5.9e-26 122.5 247 35.2
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 2.3e-25 120.6 235 36.2
Zm00001eb083170 Zea mays HOM05D006715 ORTHO05D008345 2.5e-24 117.1 233 33.5
Gohir.D06G116900 Gossypium hirsutum HOM05D006715 ORTHO05D008345 3.1e-22 110.2 124 46.8
QL02p038810 Quercus lobata HOM05D006715 ORTHO05D008345 4.4e-13 79.7 125 44.8
SEGI_34185 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 1.9e-11 74.3 347 23.1
CARHR035370 Cardamine hirsuta HOM05D006715 ORTHO05D008345 2.8e-07 60.5 77 37.7
SEGI_02927 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 2.8e-07 60.5 222 25.2
Sc02g0003940 Simmondsia chinensis HOM05D006715 ORTHO05D008345 2.3e-06 57.4 50 60.0


User provided reference genes

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