Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007457 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 2.8e-42 174.9 87 100.0
CSS0020421 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 2.8e-42 174.9 87 100.0
Actinidia19346 Actinidia chinensis HOM05D003444 ORTHO05D003963 4.6e-37 157.5 82 93.9
Gohir.A07G063100 Gossypium hirsutum HOM05D003444 ORTHO05D003963 3.0e-36 154.8 82 91.5
Duzib205G1696 Durio zibethinus HOM05D003444 ORTHO05D003963 5.0e-36 154.1 82 91.5
Gohir.D07G067700 Gossypium hirsutum HOM05D003444 ORTHO05D003963 5.0e-36 154.1 82 91.5
Thecc.03G023900 Theobroma cacao HOM05D003444 ORTHO05D003963 3.3e-35 151.4 83 88.0
Dinv20618 Davidia involucrata HOM05D003444 ORTHO05D003963 4.7e-34 147.5 82 87.8
Dinv38555 Davidia involucrata HOM05D003444 ORTHO05D003963 8.0e-34 146.7 82 86.6
Lj5A128T62 Lonicera japonica HOM05D003444 ORTHO05D003963 8.0e-34 146.7 85 84.7
Ciclev10020974m.g Citrus clementina HOM05D003444 ORTHO05D003963 1.8e-33 145.6 83 86.7
Rhsim08G0175500 Rhododendron simsii HOM05D003444 ORTHO05D003963 2.3e-33 145.2 82 87.8
Gorai.001G071300 Gossypium raimondii HOM05D003444 ORTHO05D003963 5.8e-32 140.6 77 89.6
COL.COLO4_30123 Corchorus olitorius HOM05D003444 ORTHO05D003963 7.5e-32 140.2 82 85.4
MBI10_g32035_MAGBIO Magnolia biondii HOM05D003444 ORTHO05D003963 7.5e-32 140.2 82 80.5
GSVIVG01007683001 Vitis vinifera HOM05D003444 ORTHO05D003963 7.5e-32 140.2 82 82.9
Prupe.5G169400 Prunus persica HOM05D003444 ORTHO05D003963 9.8e-32 139.8 82 81.7
TAR629G1253 Trochodendron aralioides HOM05D003444 ORTHO05D003963 1.3e-31 139.4 82 81.7
QL10p008500 Quercus lobata HOM05D003444 ORTHO05D003963 2.2e-31 138.7 76 88.2
QL10p008640 Quercus lobata HOM05D003444 ORTHO05D003963 2.2e-31 138.7 76 88.2
Nn4g22663 Nelumbo nucifera HOM05D003444 ORTHO05D003963 2.4e-30 135.2 82 78.0
CiPaw.11G022500 Carya illinoinensis HOM05D003444 ORTHO05D003963 9.2e-30 133.3 84 77.4
Eucgr.B03880 Eucalyptus grandis HOM05D003444 ORTHO05D003963 1.6e-29 132.5 81 76.5
Hund09457 Selenicereus undatus HOM05D003444 ORTHO05D003963 2.1e-29 132.1 83 78.3
CSS0016754 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 2.7e-29 131.7 75 85.3
CSS0046637 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 2.7e-29 131.7 76 84.2
MELO3C026275.2 Cucumis melo HOM05D003444 ORTHO05D003963 1.3e-28 129.4 77 81.8
MSTRG.23156 Avicennia marina HOM05D003444 ORTHO05D003963 2.3e-28 128.6 82 75.6
Haze_07554 Corylus avellana HOM05D003444 ORTHO05D003963 2.3e-28 128.6 79 78.5
FAN08G2080 Fragaria x ananassa HOM05D003444 ORTHO05D003963 3.0e-28 128.3 83 75.9
CsaV3_1G001270 Cucumis sativus L. HOM05D003444 ORTHO05D003963 3.9e-28 127.9 77 80.5
FAN04G2640 Fragaria x ananassa HOM05D003444 ORTHO05D003963 8.6e-28 126.7 83 74.7
FAN13G0471 Fragaria x ananassa HOM05D003444 ORTHO05D003963 8.6e-28 126.7 83 74.7
Peaxi162Scf00089g01529 Petunia axillaris HOM05D003444 ORTHO05D003963 8.6e-28 126.7 83 80.7
Sc12g0005160 Simmondsia chinensis HOM05D003444 ORTHO05D003963 1.1e-27 126.3 83 74.7
CiPaw.12G029000 Carya illinoinensis HOM05D003444 ORTHO05D003963 1.5e-27 125.9 76 80.3
FvH4_5g05840 Fragaria vesca HOM05D003444 ORTHO05D003963 1.9e-27 125.6 83 73.5
FAN18G3108 Fragaria x ananassa HOM05D003444 ORTHO05D003963 1.9e-27 125.6 83 73.5
Cfa019176 Carpinus fangiana HOM05D003444 ORTHO05D003963 2.5e-27 125.2 79 79.7
PGSC0003DMG400018108 Solanum tuberosum HOM05D003444 ORTHO05D003963 2.5e-27 125.2 83 80.7
RcHm_v2.0_Chr7g0192981 Rosa chinensis HOM05D003444 ORTHO05D003963 3.3e-27 124.8 83 75.9
Nitab4.5_0001284g0080 Nicotiana tabacum HOM05D003444 ORTHO05D003963 4.3e-27 124.4 77 83.1
ECA247G0281 Erigeron canadensis HOM05D003444 ORTHO05D003963 5.6e-27 124.0 75 78.7
Nitab4.5_0001647g0010 Nicotiana tabacum HOM05D003444 ORTHO05D003963 5.6e-27 124.0 78 83.3
Sabra02G0159900 Salix brachista HOM05D003444 ORTHO05D003963 7.3e-27 123.6 83 79.5
CAN.G338.8 Capsicum annuum HOM05D003444 ORTHO05D003963 9.5e-27 123.2 79 82.3
Cpa.g.sc35.80 Carica papaya HOM05D003444 ORTHO05D003963 9.5e-27 123.2 109 62.4
ClCG06G017220 Citrullus lanatus HOM05D003444 ORTHO05D003963 1.2e-26 122.9 76 78.9
vmacro19323 Vaccinium macrocarpon HOM05D003444 ORTHO05D003963 1.2e-26 122.9 73 89.0
Cc04_g12580 Coffea canephora HOM05D003444 ORTHO05D003963 2.8e-26 121.7 82 76.8
Lsat_1_v5_gn_1_28101 Lactuca sativa HOM05D003444 ORTHO05D003963 2.8e-26 121.7 74 78.4
Aqoxy3G01091 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 3.6e-26 121.3 82 73.2
ClCG09G013270 Citrullus lanatus HOM05D003444 ORTHO05D003963 4.7e-26 120.9 75 78.7
Manes.14G062700 Manihot esculenta HOM05D003444 ORTHO05D003963 6.2e-26 120.6 82 75.6
Solyc03g112520.3 Solanum lycopersicum HOM05D003444 ORTHO05D003963 6.2e-26 120.6 83 78.3
Sopen03g031580 Solanum pennellii HOM05D003444 ORTHO05D003963 6.2e-26 120.6 83 78.3
SalBow5G0548 Salvia bowleyana HOM05D003444 ORTHO05D003963 8.1e-26 120.2 76 77.6
CANSAT80G2021 Cannabis sativa HOM05D003444 ORTHO05D003963 1.8e-25 119.0 76 78.9
BcaB02g07746 Brassica carinata HOM05D003444 ORTHO05D003963 3.1e-25 118.2 73 80.8
Carub.0005s2076 Capsella rubella HOM05D003444 ORTHO05D003963 4.0e-25 117.9 67 85.1
Eucgr.B00240 Eucalyptus grandis HOM05D003444 ORTHO05D003963 6.8e-25 117.1 76 77.6
Aa31sc491G40 Aethionema arabicum HOM05D003444 ORTHO05D003963 1.2e-24 116.3 73 78.1
AL5G35210 Arabidopsis lyrata HOM05D003444 ORTHO05D003963 1.2e-24 116.3 67 85.1
CARHR082370 Cardamine hirsuta HOM05D003444 ORTHO05D003963 1.2e-24 116.3 70 82.9
HanXRQChr02g0035691 Helianthus annuus HOM05D003444 ORTHO05D003963 1.2e-24 116.3 75 73.3
Potri.002G197600 Populus trichocarpa HOM05D003444 ORTHO05D003963 1.2e-24 116.3 76 82.9
HanXRQChr16g0504631 Helianthus annuus HOM05D003444 ORTHO05D003963 1.5e-24 115.9 75 73.3
Sp5g08230 Schrenkiella parvula HOM05D003444 ORTHO05D003963 1.5e-24 115.9 67 85.1
DCAR_026161 Daucus carota HOM05D003444 ORTHO05D003963 2.0e-24 115.5 73 80.8
Thhalv10010523m.g Eutrema salsugineum HOM05D003444 ORTHO05D003963 4.4e-24 114.4 67 83.6
Sed0021330 Sechium edule HOM05D003444 ORTHO05D003963 4.4e-24 114.4 80 71.2
ATR1152G109 Amborella trichopoda HOM05D003444 ORTHO05D003963 7.5e-24 113.6 75 70.7
BraA07t29885Z Brassica rapa HOM05D003444 ORTHO05D003963 1.7e-23 112.5 74 81.1
A07p22020 Brassica napus HOM05D003444 ORTHO05D003963 3.7e-23 111.3 74 79.7
HPP92_013532 Vanilla planifolia HOM05D003444 ORTHO05D003963 4.9e-23 110.9 83 63.9
SGA_v2.0_scaffold25G10811 Striga asiatica HOM05D003444 ORTHO05D003963 6.4e-23 110.5 70 80.0
Aqoxy1G03753 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 1.1e-22 109.8 82 70.7
Aqoxy3G02821 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 1.1e-22 109.8 82 70.7
Ah.11g051380 Amaranthus hybridus HOM05D003444 ORTHO05D003963 2.4e-22 108.6 75 77.3
EL10Ac5g10690 Beta vulgaris HOM05D003444 ORTHO05D003963 3.2e-22 108.2 79 70.9
BcaNung05459 Brassica carinata HOM05D003444 ORTHO05D003963 4.1e-22 107.8 75 78.7
C06p22000 Brassica napus HOM05D003444 ORTHO05D003963 4.1e-22 107.8 75 78.7
BolC6t37388H Brassica oleracea HOM05D003444 ORTHO05D003963 4.1e-22 107.8 75 78.7
Migut.G00959 Erythranthe guttata HOM05D003444 ORTHO05D003963 4.1e-22 107.8 76 67.1
Os06g0474200 Oryza sativa ssp. japonica HOM05D003444 ORTHO05D003963 1.2e-21 106.3 85 63.5
THA.LOC104809841 Tarenaya hassleriana HOM05D003444 ORTHO05D003963 1.3e-20 102.8 74 67.6
Manes.06G108200 Manihot esculenta HOM05D003444 ORTHO05D003963 2.3e-20 102.1 72 75.0
CDE05G0978 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 6.6e-20 100.5 76 64.5
PGR083G1868 Punica granatum HOM05D003444 ORTHO05D003963 1.1e-19 99.8 55 85.5
MD06G1169900 Malus domestica HOM05D003444 ORTHO05D003963 4.3e-19 97.8 82 70.7
PSO017G6313 Papaver somniferum HOM05D003444 ORTHO05D003963 9.5e-19 96.7 71 69.0
PSO478G2857 Papaver somniferum HOM05D003444 ORTHO05D003963 9.5e-19 96.7 71 69.0
arahy.Tifrunner.gnm1.ann1.N3JE1D Arachis hypogaea HOM05D003444 ORTHO05D003963 2.8e-18 95.1 84 63.1
BcaB01g00212 Brassica carinata HOM05D003444 ORTHO05D003963 3.6e-18 94.7 65 69.2
BolC8t50544H Brassica oleracea HOM05D003444 ORTHO05D003963 3.6e-18 94.7 61 75.4
SGA_v2.0_scaffold90G27874 Striga asiatica HOM05D003444 ORTHO05D003963 4.7e-18 94.4 152 41.4
C08p29430 Brassica napus HOM05D003444 ORTHO05D003963 8.1e-18 93.6 61 73.8
Glyma.17G086600 Glycine max HOM05D003444 ORTHO05D003963 3.1e-17 91.7 84 61.9
arahy.Tifrunner.gnm1.ann1.V3MNVK Arachis hypogaea HOM05D003444 ORTHO05D003963 4.0e-17 91.3 84 61.9
Glyma.05G040200 Glycine max HOM05D003444 ORTHO05D003963 4.0e-17 91.3 84 61.9
A09p47170 Brassica napus HOM05D003444 ORTHO05D003963 3.4e-16 88.2 64 70.3
AT3G54170 Arabidopsis thaliana HOM05D003444 ORTHO05D003963 2.2e-15 85.5 67 68.7
arahy.Tifrunner.gnm1.ann1.GAE861 Arachis hypogaea HOM05D003444 ORTHO05D003963 3.2e-14 81.6 85 57.6
arahy.Tifrunner.gnm1.ann1.BAEJ4E Arachis hypogaea HOM05D003444 ORTHO05D003963 4.2e-14 81.3 85 57.6
BraA09t40179Z Brassica rapa HOM05D003444 ORTHO05D003963 5.4e-14 80.9 53 73.6
CDE11G0533 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 1.2e-13 79.7 82 52.4
Ca_16152_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 1.2e-13 79.7 80 60.0
Lalb_Chr12g0201761 Lupinus albus HOM05D003444 ORTHO05D003963 1.2e-13 79.7 81 58.0
arahy.Tifrunner.gnm1.ann1.9FBM9V Arachis hypogaea HOM05D003444 ORTHO05D003963 2.1e-13 79.0 85 56.5
arahy.Tifrunner.gnm1.ann1.T862AX Arachis hypogaea HOM05D003444 ORTHO05D003963 2.1e-13 79.0 78 57.7
Glyma.06G179400 Glycine max HOM05D003444 ORTHO05D003963 3.5e-13 78.2 84 58.3
arahy.Tifrunner.gnm1.ann1.P2M8BS Arachis hypogaea HOM05D003444 ORTHO05D003963 4.6e-13 77.8 78 59.0
VMungo1309G2319 Vigna mungo HOM05D003444 ORTHO05D003963 4.6e-13 77.8 84 58.3
Psat0s2597g0040 Pisum sativum HOM05D003444 ORTHO05D003963 1.3e-12 76.3 80 56.2
Glyma.04G186400 Glycine max HOM05D003444 ORTHO05D003963 3.0e-12 75.1 79 59.5
Lj1g0020971 Lotus japonicus HOM05D003444 ORTHO05D003963 6.6e-12 73.9 78 56.4
Lalb_Chr08g0236641 Lupinus albus HOM05D003444 ORTHO05D003963 6.6e-12 73.9 77 57.1
Medtr3g077320 Medicago truncatula HOM05D003444 ORTHO05D003963 6.6e-12 73.9 78 56.4
Phvul.002G107400 Phaseolus vulgaris HOM05D003444 ORTHO05D003963 1.1e-11 73.2 82 56.1
Ca_21949_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 7.3e-11 70.5 85 54.1
TPR.G31058 Trifolium pratense HOM05D003444 ORTHO05D003963 2.1e-10 68.9 70 58.6
Prupe.5G169200 Prunus persica HOM05D003444 ORTHO05D008476 1.4e-09 66.2 37 83.8
Psat4g060120 Pisum sativum HOM05D003444 ORTHO05D003963 3.1e-09 65.1 80 52.5
Nitab4.5_0006505g0040 Nicotiana tabacum HOM05D006630 ORTHO05D008476 6.9e-09 63.9 33 93.9
Lsat_1_v5_gn_4_76300 Lactuca sativa HOM05D003444 ORTHO05D003963 1.2e-08 63.2 48 68.8
TPR.G37557 Trifolium pratense HOM05D003444 ORTHO05D003963 1.2e-08 63.2 84 53.6
Lsat_1_v5_gn_9_59541 Lactuca sativa HOM05D000064 ORTHO05D003963 4.4e-08 61.2 39 74.4
Lsat_1_v5_gn_5_139960 Lactuca sativa HOM05D003444 ORTHO05D003963 5.8e-08 60.8 37 78.4
unitig_8.g3056 Utricularia gibba HOM05D003444 ORTHO05D003963 5.8e-08 60.8 82 50.0
TPR.G7254 Trifolium pratense HOM05D003444 ORTHO05D003963 1.3e-07 59.7 83 50.6
Hma1.2p1_0046F.1_g026860 Hydrangea macrophylla HOM05D003444 ORTHO05D003963 1.7e-07 59.3 29 96.6
SGA_v2.0_scaffold90G27871 Striga asiatica HOM05D003444 ORTHO05D003963 6.4e-07 57.4 138 34.8
AUR62028748 Chenopodium quinoa HOM05D003444 ORTHO05D003963 3.2e-06 55.1 35 77.1
arahy.Tifrunner.gnm1.ann1.L59R0S Arachis hypogaea HOM05D001055 ORTHO05D000867 4.2e-06 54.7 74 51.4
AUR62008171 Chenopodium quinoa HOM05D003444 ORTHO05D003963 5.4e-06 54.3 35 77.1
Sed0013109 Sechium edule HOM05D003444 ORTHO05D003963 5.4e-06 54.3 55 54.5
SEGI_34823 Sequoiadendron giganteum HOM05D003444 ORTHO05D003963 5.4e-06 54.3 76 50.0


User provided reference genes

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