Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020413 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 2.5e-68 261.9 127 100.0
Actinidia06107 Actinidia chinensis HOM05D004438 ORTHO05D005256 2.6e-65 251.9 127 94.5
Dinv42684 Davidia involucrata HOM05D004438 ORTHO05D005256 6.4e-64 247.3 127 92.9
Dinv19477 Davidia involucrata HOM05D004438 ORTHO05D005256 1.4e-63 246.1 126 92.1
Rhsim10G0149000 Rhododendron simsii HOM05D004438 ORTHO05D005256 1.4e-63 246.1 123 93.5
COL.COLO4_11000 Corchorus olitorius HOM05D004438 ORTHO05D005256 2.4e-63 245.4 127 90.6
Oeu027202.1 Olea europaea HOM05D004438 ORTHO05D005256 5.4e-63 244.2 127 89.0
Ah.03g137490 Amaranthus hybridus HOM05D004438 ORTHO05D005256 2.1e-62 242.3 127 88.2
Duzib187G1770 Durio zibethinus HOM05D004438 ORTHO05D005256 2.1e-62 242.3 127 89.0
Thecc.01G114400 Theobroma cacao HOM05D004438 ORTHO05D005256 2.1e-62 242.3 127 89.8
Cpa.g.sc21.8 Carica papaya HOM05D004438 ORTHO05D005256 2.7e-62 241.9 125 89.6
Gohir.A11G197600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 2.7e-62 241.9 127 88.2
Haze_25054 Corylus avellana HOM05D004438 ORTHO05D005256 4.6e-62 241.1 126 88.1
CsaV3_6G042320 Cucumis sativus L. HOM05D004438 ORTHO05D005256 4.6e-62 241.1 127 89.0
QL06p031963 Quercus lobata HOM05D004438 ORTHO05D005256 4.6e-62 241.1 126 88.1
CiPaw.03G133700 Carya illinoinensis HOM05D004438 ORTHO05D005256 6.0e-62 240.7 127 87.4
ClCG01G016040 Citrullus lanatus HOM05D004438 ORTHO05D005256 7.8e-62 240.4 127 88.2
Cfa002762 Carpinus fangiana HOM05D004438 ORTHO05D005256 1.3e-61 239.6 125 88.0
Peaxi162Scf00106g00162 Petunia axillaris HOM05D004438 ORTHO05D005256 1.3e-61 239.6 127 88.2
TWI53G0984 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 1.3e-61 239.6 127 88.2
PSO675G7198 Papaver somniferum HOM05D004438 ORTHO05D005256 1.7e-61 239.2 127 89.0
Solyc04g051710.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 1.7e-61 239.2 127 88.2
Gorai.007G245000 Gossypium raimondii HOM05D004438 ORTHO05D005256 2.3e-61 238.8 127 86.6
AUR62027160 Chenopodium quinoa HOM05D004438 ORTHO05D005256 3.0e-61 238.4 121 91.7
AUR62044399 Chenopodium quinoa HOM05D004438 ORTHO05D005256 3.0e-61 238.4 121 91.7
Sopen04g023090 Solanum pennellii HOM05D004438 ORTHO05D005256 3.0e-61 238.4 123 89.4
Sed0003177 Sechium edule HOM05D004438 ORTHO05D005256 3.9e-61 238.0 127 88.2
PGSC0003DMG400031197 Solanum tuberosum HOM05D004438 ORTHO05D005256 3.9e-61 238.0 127 87.4
Sed0014495 Sechium edule HOM05D004438 ORTHO05D005256 5.1e-61 237.7 127 86.6
vmacro18638 Vaccinium macrocarpon HOM05D004438 ORTHO05D005256 5.1e-61 237.7 127 88.2
MELO3C007474.2 Cucumis melo HOM05D004438 ORTHO05D005256 6.6e-61 237.3 127 88.2
PSO541G1989 Papaver somniferum HOM05D004438 ORTHO05D005256 6.6e-61 237.3 127 88.2
MBI11_g03707_MAGBIO Magnolia biondii HOM05D004438 ORTHO05D005256 8.6e-61 236.9 126 85.7
Ah.02g126620 Amaranthus hybridus HOM05D004438 ORTHO05D005256 1.5e-60 236.1 127 86.6
Gohir.A10G084200 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.5e-60 236.1 125 86.4
Carub.0008s2564 Capsella rubella HOM05D004438 ORTHO05D005256 1.9e-60 235.7 126 87.3
Gorai.011G114100 Gossypium raimondii HOM05D004438 ORTHO05D005256 1.9e-60 235.7 125 85.6
QL01p009111 Quercus lobata HOM05D004438 ORTHO05D005256 2.5e-60 235.3 125 86.4
SGA_v2.0_scaffold79G25619 Striga asiatica HOM05D004438 ORTHO05D005256 2.5e-60 235.3 127 85.0
THA.LOC104799304 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 2.5e-60 235.3 125 86.4
MSTRG.9937 Avicennia marina HOM05D004438 ORTHO05D005256 3.3e-60 235.0 127 85.8
CARHR278820 Cardamine hirsuta HOM05D004438 ORTHO05D005256 3.3e-60 235.0 126 86.5
Phvul.L002244 Phaseolus vulgaris HOM05D004438 ORTHO05D005256 4.3e-60 234.6 122 86.9
VMungo0720G0202 Vigna mungo HOM05D004438 ORTHO05D005256 4.3e-60 234.6 122 86.9
AT5G64816 Arabidopsis thaliana HOM05D004438 ORTHO05D005256 5.6e-60 234.2 126 85.7
Gohir.D10G104600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 5.6e-60 234.2 125 84.8
Gohir.D11G231900 Gossypium hirsutum HOM05D004438 ORTHO05D005256 5.6e-60 234.2 127 85.8
FvH4_1g22770 Fragaria vesca HOM05D004438 ORTHO05D005256 9.5e-60 233.4 127 86.6
FAN19G1036 Fragaria x ananassa HOM05D004438 ORTHO05D005256 9.5e-60 233.4 127 86.6
FAN23G1009 Fragaria x ananassa HOM05D004438 ORTHO05D005256 9.5e-60 233.4 127 86.6
FAN26G1829 Fragaria x ananassa HOM05D004438 ORTHO05D005256 9.5e-60 233.4 127 86.6
FAN28G0942 Fragaria x ananassa HOM05D004438 ORTHO05D005256 9.5e-60 233.4 127 86.6
Gohir.A11G053800 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.2e-59 233.0 125 84.0
MD15G1340400 Malus domestica HOM05D004438 ORTHO05D005256 1.2e-59 233.0 123 89.4
AL8G42290 Arabidopsis lyrata HOM05D004438 ORTHO05D005256 1.6e-59 232.6 123 87.0
Glyma.01G200000 Glycine max HOM05D004438 ORTHO05D005256 1.6e-59 232.6 126 83.3
TAR625G0091 Trochodendron aralioides HOM05D004438 ORTHO05D005256 1.6e-59 232.6 127 86.6
TAR381G0625 Trochodendron aralioides HOM05D004438 ORTHO05D005256 2.1e-59 232.3 127 85.8
MD03G1238400 Malus domestica HOM05D004438 ORTHO05D005256 2.8e-59 231.9 123 88.6
RcHm_v2.0_Chr2g0117091 Rosa chinensis HOM05D004438 ORTHO05D005256 2.8e-59 231.9 127 85.8
SGA_v2.0_scaffold308G48110 Striga asiatica HOM05D004438 ORTHO05D005256 2.8e-59 231.9 127 84.3
Glyma.10G190000 Glycine max HOM05D004438 ORTHO05D005256 4.7e-59 231.1 126 83.3
Prupe.4G171500 Prunus persica HOM05D004438 ORTHO05D005256 4.7e-59 231.1 123 88.6
A06p31610 Brassica napus HOM05D004438 ORTHO05D005256 6.2e-59 230.7 126 84.9
Gohir.D11G057300 Gossypium hirsutum HOM05D004438 ORTHO05D005256 6.2e-59 230.7 125 82.4
Aqoxy2G01099 Aquilegia oxysepala HOM05D004438 ORTHO05D005256 8.1e-59 230.3 127 85.0
Os03g0185600 Oryza sativa ssp. japonica HOM05D004438 ORTHO05D005256 8.1e-59 230.3 123 83.7
BcaB02g09832 Brassica carinata HOM05D004438 ORTHO05D005256 1.1e-58 229.9 126 84.9
BcaC01g02715 Brassica carinata HOM05D004438 ORTHO05D005256 1.1e-58 229.9 126 84.9
BolC3t18395H Brassica oleracea HOM05D004438 ORTHO05D005256 1.1e-58 229.9 126 84.9
Prupe.6G170300 Prunus persica HOM05D004438 ORTHO05D005256 1.1e-58 229.9 127 86.6
Sp2g27890 Schrenkiella parvula HOM05D004438 ORTHO05D005256 1.1e-58 229.9 126 84.9
C03p61350 Brassica napus HOM05D004438 ORTHO05D005256 1.8e-58 229.2 123 86.2
BraA06t26098Z Brassica rapa HOM05D004438 ORTHO05D005256 1.8e-58 229.2 123 86.2
Migut.N00230 Erythranthe guttata HOM05D004438 ORTHO05D005256 1.8e-58 229.2 127 83.5
TWI74G1039 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 1.8e-58 229.2 127 83.5
Zm00001eb006400 Zea mays HOM05D004438 ORTHO05D005256 1.8e-58 229.2 123 84.6
Lalb_Chr02g0150651 Lupinus albus HOM05D004438 ORTHO05D005256 2.4e-58 228.8 122 84.4
CAN.G344.10 Capsicum annuum HOM05D004438 ORTHO05D005256 3.1e-58 228.4 127 84.3
Lj5g0016992 Lotus japonicus HOM05D004438 ORTHO05D005256 3.1e-58 228.4 122 84.4
Nitab4.5_0000131g0360 Nicotiana tabacum HOM05D004438 ORTHO05D005256 3.1e-58 228.4 123 83.7
Nitab4.5_0003709g0100 Nicotiana tabacum HOM05D004438 ORTHO05D005256 4.0e-58 228.0 123 83.7
Peaxi162Scf00979g00008 Petunia axillaris HOM05D004438 ORTHO05D005256 5.2e-58 227.6 123 84.6
THA.LOC104819312 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 5.2e-58 227.6 126 84.9
Cc10_g15830 Coffea canephora HOM05D004438 ORTHO05D005256 6.8e-58 227.3 125 83.2
Glyma.20G200800 Glycine max HOM05D004438 ORTHO05D005256 6.8e-58 227.3 128 81.2
Medtr1g073620 Medicago truncatula HOM05D004438 ORTHO05D005256 6.8e-58 227.3 127 80.3
MD15G1331400 Malus domestica HOM05D004438 ORTHO05D005256 8.9e-58 226.9 123 87.0
Eucgr.F02140 Eucalyptus grandis HOM05D004438 ORTHO05D005256 1.2e-57 226.5 123 84.6
TPR.G28848 Trifolium pratense HOM05D004438 ORTHO05D005256 1.2e-57 226.5 122 83.6
CANSAT01G2942 Cannabis sativa HOM05D004438 ORTHO05D005256 1.5e-57 226.1 123 86.2
SalBow3G3218 Salvia bowleyana HOM05D004438 ORTHO05D005256 1.5e-57 226.1 123 82.9
Zm00001eb401580 Zea mays HOM05D004438 ORTHO05D005256 1.5e-57 226.1 123 82.9
Thhalv10005124m.g Eutrema salsugineum HOM05D004438 ORTHO05D005256 2.0e-57 225.7 126 83.3
Potri.002G105400 Populus trichocarpa HOM05D004438 ORTHO05D005256 4.4e-57 224.6 126 82.5
Nitab4.5_0000184g0290 Nicotiana tabacum HOM05D004438 ORTHO05D005256 9.9e-57 223.4 115 89.6
Potri.005G156400 Populus trichocarpa HOM05D004438 ORTHO05D005256 9.9e-57 223.4 123 83.7
RcHm_v2.0_Chr5g0031621 Rosa chinensis HOM05D000965 ORTHO05D000842 1.3e-56 223.0 122 83.6
Sopen00g011470 Solanum pennellii HOM05D004438 ORTHO05D005256 1.3e-56 223.0 123 82.1
TAR625G0287 Trochodendron aralioides HOM05D004438 ORTHO05D005256 1.3e-56 223.0 126 81.7
Solyc04g076260.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 1.7e-56 222.6 123 82.9
Aa31LG1G17110 Aethionema arabicum HOM05D004438 ORTHO05D005256 2.2e-56 222.2 126 81.7
Nn5g29898 Nelumbo nucifera HOM05D004438 ORTHO05D005256 2.2e-56 222.2 126 81.0
HPP92_015825 Vanilla planifolia HOM05D004438 ORTHO05D005256 2.2e-56 222.2 126 79.4
Atru.chr13.1020 Acer truncatum HOM05D004438 ORTHO05D005256 2.9e-56 221.9 123 81.3
DCAR_009568 Daucus carota HOM05D004438 ORTHO05D005256 2.9e-56 221.9 126 78.6
Lsat_1_v5_gn_8_150501 Lactuca sativa HOM05D004438 ORTHO05D005256 2.9e-56 221.9 121 85.1
CAN.G475.35 Capsicum annuum HOM05D004438 ORTHO05D005256 3.8e-56 221.5 123 82.9
ECA233G2293 Erigeron canadensis HOM05D004438 ORTHO05D005256 6.4e-56 220.7 125 83.2
HanXRQChr12g0372061 Helianthus annuus HOM05D004438 ORTHO05D005256 6.4e-56 220.7 123 83.7
Psat6g129880 Pisum sativum HOM05D004438 ORTHO05D005256 8.4e-56 220.3 122 79.5
Ciclev10002841m.g Citrus clementina HOM05D004438 ORTHO05D005256 1.1e-55 219.9 123 81.3
DCAR_009565 Daucus carota HOM05D004438 ORTHO05D005256 1.9e-55 219.2 126 77.8
GSVIVG01009169001 Vitis vinifera HOM05D004438 ORTHO05D005256 2.4e-55 218.8 123 82.1
PGSC0003DMG400009364 Solanum tuberosum HOM05D004438 ORTHO05D005256 3.2e-55 218.4 123 81.3
Sc03g0004400 Simmondsia chinensis HOM05D004438 ORTHO05D005256 5.4e-55 217.6 115 86.1
Psat7g208520 Pisum sativum HOM05D004438 ORTHO05D005256 1.6e-54 216.1 122 78.7
unitig_699.g19132 Utricularia gibba HOM05D004438 ORTHO05D005256 3.5e-54 214.9 124 77.4
SalBow2G1806 Salvia bowleyana HOM05D004438 ORTHO05D005256 4.6e-54 214.5 125 80.0
EL10Ac6g13106 Beta vulgaris HOM05D004438 ORTHO05D005256 5.1e-53 211.1 107 93.5
Manes.10G131700 Manihot esculenta HOM05D004438 ORTHO05D005256 4.3e-52 208.0 123 75.6
Nitab4.5_0004977g0040 Nicotiana tabacum HOM05D004438 ORTHO05D005256 4.3e-52 208.0 107 90.7
Sc23g0000680 Simmondsia chinensis HOM05D004438 ORTHO05D005256 4.7e-51 204.5 123 77.2
Gorai.007G062500 Gossypium raimondii HOM05D004438 ORTHO05D005256 8.1e-51 203.8 125 76.0
Lalb_Chr21g0312471 Lupinus albus HOM05D004438 ORTHO05D005256 1.4e-50 203.0 118 78.0
Sabra02G0082700 Salix brachista HOM05D004438 ORTHO05D005256 1.8e-50 202.6 112 83.0
Manes.02G145100 Manihot esculenta HOM05D004438 ORTHO05D005256 2.4e-50 202.2 110 83.6
FvH4_3g18771 Fragaria vesca HOM05D004438 ORTHO05D005256 4.0e-50 201.4 115 82.6
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 6.9e-50 200.7 112 83.0
Sabra05G0119900 Salix brachista HOM05D004438 ORTHO05D005256 3.4e-49 198.4 112 81.2
ATR1132G028 Amborella trichopoda HOM05D004438 ORTHO05D005256 2.2e-48 195.7 126 73.0
Nn1g08461 Nelumbo nucifera HOM05D004438 ORTHO05D005256 3.8e-48 194.9 103 86.4
FAN16G1755 Fragaria x ananassa HOM05D004438 ORTHO05D005256 8.4e-48 193.7 107 84.1
CSS0036861 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 1.9e-47 192.6 98 96.9
TWI56G0149 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 2.4e-47 192.2 124 75.8
Duzib264G0014 Durio zibethinus HOM05D004438 ORTHO05D005256 3.2e-47 191.8 101 88.1
Migut.G00404 Erythranthe guttata HOM05D004438 ORTHO05D005256 9.3e-47 190.3 134 69.4
SHI31196 Sapria himalayana HOM05D004438 ORTHO05D005256 6.6e-45 184.1 124 66.1
Oeu028520.2 Olea europaea HOM05D004438 ORTHO05D005256 3.3e-44 181.8 102 85.3
FAN11G0727 Fragaria x ananassa HOM05D000965 ORTHO05D000842 7.3e-44 180.6 98 83.7
FAN21G3234 Fragaria x ananassa HOM05D000965 ORTHO05D000842 1.3e-43 179.9 98 82.7
Nitab4.5_0004977g0030 Nicotiana tabacum HOM05D004438 ORTHO05D005256 4.8e-43 177.9 90 90.0
Rhsim08G0005900 Rhododendron simsii HOM05D004438 ORTHO05D005256 8.1e-43 177.2 102 83.3
Mapoly0031s0095 Marchantia polymorpha HOM05D004438 ORTHO05D005256 6.9e-42 174.1 120 67.5
Pp3c22_12110 Physcomitrium patens HOM05D004438 ORTHO05D005256 2.2e-40 169.1 127 62.2
AagrBONN_evm.TU.Sc2ySwM_117.295 Anthoceros agrestis HOM05D004438 ORTHO05D005256 4.9e-40 167.9 124 61.3
COL.COLO4_35234 Corchorus olitorius HOM05D004438 ORTHO05D005256 7.1e-39 164.1 131 64.1
SEGI_36857 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 2.7e-38 162.2 88 80.7
Pp3c19_18370 Physcomitrium patens HOM05D004438 ORTHO05D005256 9.0e-34 147.1 119 56.3
Gohir.1Z049407 Gossypium hirsutum HOM05D004438 ORTHO05D005256 5.8e-33 144.4 98 73.5
SEGI_35678 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 1.9e-31 139.4 129 53.5
CSS0034319 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 4.6e-30 134.8 114 64.9
AagrBONN_evm.TU.Sc2ySwM_344.1988 Anthoceros agrestis HOM05D004438 ORTHO05D005256 7.9e-30 134.0 122 52.5
CSS0009061 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 3.3e-28 128.6 108 63.0
arahy.Tifrunner.gnm1.ann1.7JV24P Arachis hypogaea HOM05D004438 ORTHO05D005256 1.1e-26 123.6 57 94.7
PRCOL_00001176 Prasinoderma coloniale HOM05D004438 ORTHO05D005256 2.1e-22 109.4 74 59.5
CiPaw.04G091100 Carya illinoinensis HOM05D004438 ORTHO05D005256 2.7e-22 109.0 62 80.6
MCO08G336 Micromonas commoda HOM05D004438 ORTHO05D005256 2.3e-21 105.9 104 48.1
ATR0049G041 Amborella trichopoda HOM05D004438 ORTHO05D005256 3.0e-21 105.5 126 43.7
Cre07.g313800 Chlamydomonas reinhardtii HOM05D004438 ORTHO05D005256 1.9e-20 102.8 79 55.7
CSS0036545 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 5.9e-17 91.3 47 93.6
Hund21738 Selenicereus undatus HOM05D004438 ORTHO05D005256 3.3e-12 75.5 35 97.1
SalBow2G3602 Salvia bowleyana HOM05D004438 ORTHO05D005256 1.0e-08 63.9 32 81.2
CBR_g51299 Chara braunii HOM05D004438 ORTHO05D005256 3.8e-08 62.0 35 74.3
SalBow1G8643 Salvia bowleyana HOM05D000379 ORTHO05D000254 1.4e-07 60.1 33 75.8


User provided reference genes

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