Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 3.8e-162 574.7 280 100.0
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 1.6e-120 436.4 275 78.5
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 3.1e-111 405.6 288 69.4
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 5.8e-110 401.4 284 69.4
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 2.2e-109 399.4 290 68.3
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 6.2e-104 381.3 273 72.2
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 3.1e-103 379.0 277 66.8
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 5.8e-102 374.8 286 67.1
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 1.0e-101 374.0 286 66.8
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 8.4e-101 370.9 283 66.1
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 2.7e-99 365.9 272 71.0
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 7.9e-99 364.4 281 67.3
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.9e-97 359.8 211 82.0
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 1.1e-95 354.0 268 67.9
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 4.1e-95 352.1 275 66.5
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 9.0e-95 350.9 322 59.9
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 2.0e-94 349.7 272 66.5
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 1.3e-93 347.1 270 67.4
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 8.5e-93 344.4 279 64.5
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 1.4e-92 343.6 275 65.5
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 1.9e-92 343.2 265 66.0
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 9.4e-92 340.9 221 77.4
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 3.6e-91 339.0 264 64.8
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 7.9e-91 337.8 284 62.7
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 6.7e-90 334.7 283 62.9
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 1.1e-89 334.0 278 64.4
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 2.0e-89 333.2 274 62.8
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 2.5e-89 332.8 273 63.7
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 3.3e-89 332.4 290 61.7
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 4.3e-89 332.0 278 61.5
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 5.7e-89 331.6 274 63.9
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 7.4e-89 331.3 276 64.5
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 1.3e-88 330.5 279 65.6
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 3.7e-88 328.9 219 74.0
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 6.3e-88 328.2 271 60.9
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 6.3e-88 328.2 300 60.0
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 6.3e-88 328.2 257 65.4
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 6.3e-88 328.2 225 73.8
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 8.2e-88 327.8 256 66.4
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 1.4e-87 327.0 294 58.8
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.4e-87 327.0 289 61.6
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 1.8e-87 326.6 273 61.2
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.8e-87 326.6 278 62.9
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 3.1e-87 325.9 282 62.4
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 4.1e-87 325.5 277 62.8
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 4.1e-87 325.5 266 63.9
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 5.3e-87 325.1 291 59.8
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 5.3e-87 325.1 291 58.1
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 9.1e-87 324.3 278 62.6
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 1.2e-86 323.9 212 74.1
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 1.5e-86 323.6 223 70.4
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 2.0e-86 323.2 277 61.7
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 2.6e-86 322.8 294 56.8
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 3.4e-86 322.4 277 58.8
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 4.5e-86 322.0 266 63.2
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 1.3e-85 320.5 267 60.7
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.3e-85 320.5 281 61.6
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 2.2e-85 319.7 289 60.6
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 2.2e-85 319.7 258 64.3
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 2.2e-85 319.7 290 57.6
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 3.8e-85 318.9 281 60.9
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 3.8e-85 318.9 271 61.6
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 8.5e-85 317.8 271 61.3
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 1.1e-84 317.4 278 61.9
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 1.4e-84 317.0 266 63.9
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 1.4e-84 317.0 269 62.1
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 2.5e-84 316.2 271 61.3
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 3.2e-84 315.8 219 70.8
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 4.2e-84 315.5 269 59.9
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 5.5e-84 315.1 272 61.0
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 1.2e-83 313.9 286 59.1
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 1.2e-83 313.9 274 59.1
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 2.7e-83 312.8 214 72.0
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 2.7e-83 312.8 269 59.9
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 3.6e-83 312.4 273 60.8
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 4.7e-83 312.0 264 61.4
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 6.1e-83 311.6 284 60.9
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 3.9e-82 308.9 277 60.3
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 5.1e-82 308.5 286 58.0
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 6.7e-82 308.1 279 59.5
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 1.1e-81 307.4 284 57.7
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 1.5e-81 307.0 279 60.6
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 3.3e-81 305.8 274 59.5
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 3.3e-81 305.8 285 58.6
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 3.3e-81 305.8 274 60.6
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 3.3e-81 305.8 291 59.5
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 9.7e-81 304.3 204 71.1
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 1.7e-80 303.5 285 57.9
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 4.8e-80 302.0 273 59.3
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 4.8e-80 302.0 274 58.8
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 6.3e-80 301.6 285 57.5
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 4.1e-79 298.9 287 56.4
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 4.1e-79 298.9 287 56.4
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 2.0e-78 296.6 280 57.9
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 7.7e-78 294.7 213 68.1
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 7.7e-78 294.7 214 67.3
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 1.0e-77 294.3 268 59.3
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 2.2e-77 293.1 221 71.0
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 1.5e-76 290.4 208 70.2
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 1.8e-74 283.5 210 65.7
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 2.8e-72 276.2 214 65.4
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 4.8e-72 275.4 207 65.2
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 4.8e-72 275.4 207 65.2
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 2.6e-70 269.6 207 64.7
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 2.6e-70 269.6 207 64.7
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 5.9e-70 268.5 241 57.3
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 8.5e-69 264.6 213 61.0
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 2.5e-68 263.1 260 53.8
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 2.7e-67 259.6 202 63.9
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 1.4e-66 257.3 201 62.7
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 2.6e-57 226.5 206 55.8
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 6.3e-56 221.9 206 55.8
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 1.2e-54 217.6 211 55.5
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 5.5e-52 208.8 195 51.3
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 6.3e-48 195.3 164 59.8
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 6.1e-43 178.7 219 49.8
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 2.3e-42 176.8 236 47.9
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 7.5e-41 171.8 174 51.1
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 8.3e-40 168.3 233 42.1
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.2e-39 166.4 217 43.3
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 1.2e-38 164.5 216 41.7
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 6.0e-38 162.2 233 40.3
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 5.0e-37 159.1 126 61.9
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 1.1e-34 151.4 170 50.0
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 6.0e-30 135.6 111 61.3
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 4.4e-25 119.4 117 53.0
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 1.3e-21 107.8 78 61.5
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 3.0e-21 106.7 144 41.7
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 5.1e-21 105.9 85 58.8
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 3.1e-18 96.7 61 68.9
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 1.2e-17 94.7 202 36.1
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.9e-15 87.4 87 50.6
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 1.3e-13 81.3 144 36.8
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 5.3e-10 69.3 74 45.9


User provided reference genes

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