Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020400 Camellia sinensis var. sinensis HOM05D007702 ORTHO05D009736 3.7e-144 515.0 283 100.0
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 8.6e-61 238.0 290 58.3
Haze_08173 Corylus avellana HOM05D007702 ORTHO05D009736 3.1e-58 229.6 261 49.4
Cfa012496 Carpinus fangiana HOM05D007702 ORTHO05D009736 8.4e-56 221.5 258 48.4
EL10Ac7g18156 Beta vulgaris HOM05D007702 ORTHO05D009736 1.1e-55 221.1 255 48.2
Prupe.3G023000 Prunus persica HOM05D007702 ORTHO05D009736 9.2e-55 218.0 305 46.9
Thecc.06G057000 Theobroma cacao HOM05D007702 ORTHO05D009736 2.1e-54 216.9 254 48.0
TAR383G0542 Trochodendron aralioides HOM05D007702 ORTHO05D009736 2.7e-54 216.5 191 59.2
MD09G1165300 Malus domestica HOM05D007702 ORTHO05D009736 4.6e-54 215.7 273 48.4
Manes.06G177600 Manihot esculenta HOM05D007702 ORTHO05D009736 1.3e-53 214.2 251 50.2
AUR62025666 Chenopodium quinoa HOM05D007702 ORTHO05D009736 2.3e-53 213.4 265 46.0
CiPaw.11G097300 Carya illinoinensis HOM05D007702 ORTHO05D009736 3.0e-53 213.0 279 45.9
AUR62001339 Chenopodium quinoa HOM05D007702 ORTHO05D009736 3.0e-53 213.0 282 45.0
Ah.08g217790 Amaranthus hybridus HOM05D007702 ORTHO05D009736 6.6e-53 211.8 260 48.5
Sabra08G0002400 Salix brachista HOM05D007702 ORTHO05D009736 5.6e-52 208.8 273 46.9
Nn2g12749 Nelumbo nucifera HOM05D007702 ORTHO05D009736 1.2e-51 207.6 202 53.5
Cc03_g07590 Coffea canephora HOM05D007702 ORTHO05D009736 2.1e-51 206.8 231 49.8
Eucgr.J03180 Eucalyptus grandis HOM05D007702 ORTHO05D009736 2.1e-51 206.8 247 49.4
MBI07_g12934_MAGBIO Magnolia biondii HOM05D007702 ORTHO05D009736 2.1e-51 206.8 169 60.9
DCAR_007958 Daucus carota HOM05D007702 ORTHO05D009736 4.7e-51 205.7 265 43.4
RcHm_v2.0_Chr2g0149381 Rosa chinensis HOM05D007702 ORTHO05D009736 4.7e-51 205.7 221 53.8
Aqoxy7G02739 Aquilegia oxysepala HOM05D007702 ORTHO05D009736 2.4e-50 203.4 238 47.9
Gohir.A10G002000 Gossypium hirsutum HOM05D007702 ORTHO05D009736 2.4e-50 203.4 272 44.9
Solyc01g102860.2 Solanum lycopersicum HOM05D007702 ORTHO05D009736 2.4e-50 203.4 250 48.0
PGSC0003DMG400018255 Solanum tuberosum HOM05D007702 ORTHO05D009736 2.4e-50 203.4 235 48.5
Sopen01g045260 Solanum pennellii HOM05D007702 ORTHO05D009736 4.0e-50 202.6 254 48.0
Duzib235G0870 Durio zibethinus HOM05D007702 ORTHO05D009736 6.9e-50 201.8 269 44.6
Potri.008G004800 Populus trichocarpa HOM05D007702 ORTHO05D009736 6.9e-50 201.8 281 46.6
Peaxi162Scf00051g00198 Petunia axillaris HOM05D007702 ORTHO05D009736 2.0e-49 200.3 138 71.7
BraA06t23478Z Brassica rapa HOM05D007702 ORTHO05D009736 3.4e-49 199.5 231 48.1
Ciclev10032212m.g Citrus clementina HOM05D007702 ORTHO05D009736 3.4e-49 199.5 264 50.8
Nitab4.5_0006053g0030 Nicotiana tabacum HOM05D007702 ORTHO05D009736 2.9e-48 196.4 130 70.8
A06p02690 Brassica napus HOM05D007702 ORTHO05D009736 3.8e-48 196.1 242 47.5
Cpa.g.sc155.12 Carica papaya HOM05D007702 ORTHO05D009736 6.4e-48 195.3 249 43.4
BcaB07g33554 Brassica carinata HOM05D007702 ORTHO05D009736 1.4e-47 194.1 276 42.4
BcaC08g43279 Brassica carinata HOM05D007702 ORTHO05D009736 1.9e-47 193.7 276 46.4
C06p06290 Brassica napus HOM05D007702 ORTHO05D009736 1.9e-47 193.7 276 46.4
BolC6t35738H Brassica oleracea HOM05D007702 ORTHO05D009736 1.9e-47 193.7 276 46.4
Migut.I01200 Erythranthe guttata HOM05D007702 ORTHO05D009736 1.9e-47 193.7 160 62.5
Nitab4.5_0010634g0010 Nicotiana tabacum HOM05D007702 ORTHO05D009736 1.9e-47 193.7 235 50.6
PGR042G2668 Punica granatum HOM05D007702 ORTHO05D009736 2.4e-47 193.4 152 59.9
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 2.4e-47 193.4 235 47.7
SGA_v2.0_scaffold71G23985 Striga asiatica HOM05D007702 ORTHO05D009736 2.4e-47 193.4 155 62.6
Aa31LG10G3400 Aethionema arabicum HOM05D007702 ORTHO05D009736 4.2e-47 192.6 237 46.4
CDE05G1247 Ceratophyllum demersum HOM05D007702 ORTHO05D009736 7.1e-47 191.8 151 60.9
Thhalv10012117m.g Eutrema salsugineum HOM05D007702 ORTHO05D009736 7.1e-47 191.8 238 46.6
Medtr2g101430 Medicago truncatula HOM05D007702 ORTHO05D009736 6.0e-46 188.7 136 66.2
Gohir.D10G002100 Gossypium hirsutum HOM05D007702 ORTHO05D009736 7.8e-46 188.3 261 43.3
CANSAT54G1387 Cannabis sativa HOM05D007702 ORTHO05D009736 1.0e-45 188.0 172 56.4
AT1G51080 Arabidopsis thaliana HOM05D007702 ORTHO05D009736 1.3e-45 187.6 232 47.4
AL1G58880 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 1.7e-45 187.2 286 43.4
Ca_00991_v3 Cicer arietinum L. HOM05D007702 ORTHO05D009736 1.7e-45 187.2 119 72.3
THA.LOC104817895 Tarenaya hassleriana HOM05D007702 ORTHO05D009736 2.3e-45 186.8 281 43.4
Carub.0001s3998 Capsella rubella HOM05D007702 ORTHO05D009736 3.0e-45 186.4 232 47.8
CANSAT54G2309 Cannabis sativa HOM05D007702 ORTHO05D009736 3.9e-45 186.0 172 55.8
COL.COLO4_31154 Corchorus olitorius HOM05D007702 ORTHO05D009736 3.9e-45 186.0 225 49.8
Gorai.011G002500 Gossypium raimondii HOM05D007702 ORTHO05D009736 3.9e-45 186.0 226 46.0
FvH4_6g36940 Fragaria vesca HOM05D007702 ORTHO05D009736 5.1e-45 185.7 121 71.9
CAN.G2401.1 Capsicum annuum HOM05D000005 ORTHO05D000012 6.6e-45 185.3 153 60.8
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 6.6e-45 185.3 218 49.5
GSVIVG01029550001 Vitis vinifera HOM05D007702 ORTHO05D009736 6.6e-45 185.3 259 47.1
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 8.7e-45 184.9 232 47.4
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.9e-44 183.7 121 70.2
Sp1g37800 Schrenkiella parvula HOM05D007702 ORTHO05D009736 3.3e-44 183.0 307 42.7
Atru.chr1.2666 Acer truncatum HOM05D007702 ORTHO05D009736 4.3e-44 182.6 273 45.8
CARHR041100 Cardamine hirsuta HOM05D007702 ORTHO05D009736 7.3e-44 181.8 232 46.1
arahy.Tifrunner.gnm1.ann1.TT2UX9 Arachis hypogaea HOM05D007702 ORTHO05D009736 9.6e-44 181.4 124 65.3
QL12p001257 Quercus lobata HOM05D007702 ORTHO05D009736 9.6e-44 181.4 215 48.4
unitig_748.g7485 Utricularia gibba HOM05D007702 ORTHO05D009736 2.1e-43 180.3 162 59.9
MELO3C024282.2 Cucumis melo HOM05D007702 ORTHO05D009736 2.8e-43 179.9 128 64.1
ClCG09G001650 Citrullus lanatus HOM05D007702 ORTHO05D009736 4.8e-43 179.1 162 53.7
CsaV3_7G033690 Cucumis sativus L. HOM05D007702 ORTHO05D009736 4.8e-43 179.1 133 62.4
TPR.G39495 Trifolium pratense HOM05D007702 ORTHO05D009736 1.8e-42 177.2 122 68.9
Oeu049633.1 Olea europaea HOM05D007702 ORTHO05D009736 4.5e-41 172.6 210 48.6
Psat5g305320 Pisum sativum HOM05D007702 ORTHO05D009736 5.8e-41 172.2 226 49.6
PSO144G0036 Papaver somniferum HOM05D007702 ORTHO05D009736 4.2e-39 166.0 235 48.5
Lsat_1_v5_gn_1_39381 Lactuca sativa HOM05D007702 ORTHO05D009736 2.1e-38 163.7 146 56.8
PSO423G0097 Papaver somniferum HOM05D007702 ORTHO05D009736 1.9e-36 157.1 239 41.8
Rhsim08G0250300 Rhododendron simsii HOM05D007702 ORTHO05D009736 1.9e-36 157.1 294 36.4
vmacro18744 Vaccinium macrocarpon HOM05D007702 ORTHO05D009736 9.6e-36 154.8 130 53.1
Os03g0138900 Oryza sativa ssp. japonica HOM05D007702 ORTHO05D009736 8.1e-35 151.8 253 42.3
SalBow6G4959 Salvia bowleyana HOM05D007702 ORTHO05D009736 8.1e-35 151.8 126 59.5
ATR1126G014 Amborella trichopoda HOM05D007702 ORTHO05D009736 1.1e-34 151.4 156 53.2
ECA236G1927 Erigeron canadensis HOM05D007702 ORTHO05D009736 3.1e-34 149.8 233 42.5
Aa31LG6G10000 Aethionema arabicum HOM05D007702 ORTHO05D009736 1.2e-33 147.9 125 56.0
Gorai.011G091300 Gossypium raimondii HOM05D007702 ORTHO05D009736 7.9e-30 135.2 223 37.2
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.9e-28 130.6 129 57.4
Pp3c5_18880 Physcomitrium patens HOM05D007702 ORTHO05D009736 5.6e-28 129.0 126 47.6
AagrBONN_evm.TU.Sc2ySwM_228.5746 Anthoceros agrestis HOM05D007702 ORTHO05D009736 2.4e-26 123.6 271 33.9
Mapoly0020s0094 Marchantia polymorpha HOM05D007702 ORTHO05D009736 2.4e-26 123.6 126 43.7
Aa31LG3G5120 Aethionema arabicum HOM05D007702 ORTHO05D009736 5.3e-26 122.5 106 56.6
Zm00001eb230260 Zea mays HOM05D007702 ORTHO05D009736 4.9e-24 115.9 244 35.2
SEGI_14624 Sequoiadendron giganteum HOM05D007702 ORTHO05D009736 6.5e-24 115.5 134 44.0
EL10Ac3g06847 Beta vulgaris HOM05D000495 ORTHO05D009736 1.2e-22 111.3 113 50.4
Dinv37777 Davidia involucrata HOM05D000532 ORTHO05D002745 9.0e-18 95.1 157 47.8
Actinidia21654 Actinidia chinensis HOM05D007715 ORTHO05D009760 1.2e-14 84.7 82 64.6
FAN07G0391 Fragaria x ananassa HOM05D007702 ORTHO05D009736 2.5e-12 77.0 49 69.4
FAN10G3703 Fragaria x ananassa HOM05D007702 ORTHO05D009736 9.7e-12 75.1 147 38.1
FAN02G1843 Fragaria x ananassa HOM05D007702 ORTHO05D009736 3.7e-11 73.2 150 36.0
AL3G14490 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 7.2e-07 58.9 51 54.9


User provided reference genes

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