Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 0.0e+00 1632.1 833 100.0
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 0.0e+00 1540.4 865 93.3
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 0.0e+00 1118.6 863 70.8
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 0.0e+00 1085.9 869 67.9
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 7.4e-310 1067.0 869 67.1
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 4.8e-309 1064.3 869 67.3
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 3.5e-304 1048.1 870 65.6
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 5.5e-273 944.5 851 64.2
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 7.2e-265 917.5 851 61.8
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 1.0e-247 860.5 849 56.7
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 2.3e-242 842.8 870 54.8
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 1.9e-241 839.7 870 55.2
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 6.8e-239 831.2 879 54.9
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 2.0e-235 819.7 869 53.7
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 5.9e-235 818.1 861 55.2
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 3.9e-234 815.5 869 54.7
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 3.6e-232 808.9 854 54.1
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 4.0e-231 805.4 869 54.3
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 8.3e-229 797.7 867 54.1
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 3.5e-227 792.3 874 53.1
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 6.6e-226 788.1 879 52.8
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 1.2e-224 783.9 873 53.5
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 6.2e-224 781.6 871 53.0
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 1.8e-223 780.0 873 52.7
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 2.2e-221 773.1 872 52.5
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 2.9e-221 772.7 872 51.7
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 3.9e-218 762.3 870 52.2
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 3.9e-218 762.3 869 51.0
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 6.6e-218 761.5 881 50.3
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 4.3e-217 758.8 864 52.1
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 7.3e-217 758.1 869 51.4
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 7.3e-217 758.1 870 50.9
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.2e-216 757.3 877 51.9
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 2.8e-216 756.1 864 52.1
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.1e-215 754.2 870 50.7
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 6.8e-215 751.5 864 51.3
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 5.8e-214 748.4 871 50.4
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 1.3e-213 747.3 871 49.6
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 3.8e-213 745.7 871 49.5
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 3.8e-213 745.7 871 49.5
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 3.0e-210 736.1 852 50.8
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 3.3e-209 732.6 862 49.4
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 1.4e-207 727.2 868 52.5
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 6.9e-207 724.9 873 49.5
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 2.9e-205 719.5 884 50.5
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 2.9e-205 719.5 849 51.1
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 4.2e-204 715.7 857 50.6
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 4.2e-204 715.7 869 47.5
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 7.1e-204 714.9 866 48.4
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 4.6e-203 712.2 866 48.2
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 6.9e-199 698.4 839 50.2
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 9.0e-199 698.0 868 47.8
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 3.4e-198 696.0 887 49.3
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 2.2e-197 693.3 951 46.1
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 8.4e-197 691.4 834 49.0
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 1.0e-194 684.5 854 48.7
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 6.7e-194 681.8 871 47.3
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 7.4e-193 678.3 871 47.0
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 9.6e-193 677.9 865 47.3
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 1.3e-192 677.6 833 49.9
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 2.8e-192 676.4 874 46.8
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 2.8e-192 676.4 874 46.8
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 8.1e-192 674.9 867 47.3
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 5.3e-191 672.2 860 47.8
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 8.4e-189 664.8 883 47.2
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 1.3e-186 657.5 866 47.2
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 1.8e-183 647.1 965 42.7
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 6.9e-183 645.2 870 46.1
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 2.0e-182 643.7 870 45.6
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 7.6e-182 641.7 821 47.6
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 2.1e-179 633.6 863 45.8
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 2.2e-176 623.6 857 46.0
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 6.3e-176 622.1 868 45.0
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 6.5e-173 612.1 907 44.8
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 2.5e-172 610.1 861 45.4
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 4.2e-172 609.4 936 42.4
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 1.6e-171 607.4 847 47.1
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 6.1e-171 605.5 907 44.0
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 1.3e-168 597.8 866 44.7
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 4.8e-168 595.9 829 44.1
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 4.1e-167 592.8 857 44.0
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 1.5e-166 590.9 864 43.9
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.2e-163 581.3 825 42.5
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.8e-159 567.4 810 44.3
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 6.9e-159 565.5 745 47.5
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 3.4e-158 563.1 902 40.9
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 3.2e-156 556.6 641 52.0
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.8e-154 550.8 813 43.8
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 2.3e-154 550.4 874 42.0
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.1e-153 548.1 923 40.4
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 2.0e-153 547.4 860 42.8
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 4.4e-153 546.2 923 40.6
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.8e-151 540.8 861 43.7
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 2.4e-151 540.4 862 43.0
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 3.2e-148 530.0 860 42.0
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 3.2e-148 530.0 945 38.9
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 4.0e-146 523.1 860 41.9
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 5.7e-145 519.2 850 43.1
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 4.8e-136 489.6 883 41.1
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 7.7e-134 482.3 864 39.4
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 5.0e-133 479.6 852 39.0
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 9.5e-132 475.3 863 39.9
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 3.6e-131 473.4 663 46.8
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 2.3e-122 444.1 845 37.9
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 6.8e-114 416.0 854 36.9
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 4.4e-113 413.3 863 37.5
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 9.8e-113 412.1 870 37.1
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 2.2e-112 411.0 824 36.5
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 8.3e-112 409.1 856 37.3
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 1.4e-111 408.3 852 37.2
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 1.9e-111 407.9 852 37.2
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 7.0e-111 406.0 863 37.3
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 3.5e-110 403.7 855 37.3
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 4.6e-110 403.3 899 37.2
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.7e-109 401.4 686 41.7
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 6.6e-109 399.4 855 37.5
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 1.9e-108 397.9 855 37.0
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 1.9e-108 397.9 855 37.0
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 1.9e-108 397.9 871 36.7
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 4.7e-107 393.3 854 37.1
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 2.0e-105 387.9 658 41.8
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 4.7e-99 366.7 836 35.3
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 1.7e-96 358.2 604 41.9
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 8.7e-93 345.9 849 35.1
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 1.0e-85 322.4 822 33.2
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 3.2e-79 300.8 916 31.9
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 2.9e-72 277.7 399 39.6
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 7.1e-71 273.1 919 29.2
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 6.0e-70 270.0 893 29.7
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 1.8e-69 268.5 491 40.5
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 4.7e-46 190.7 226 50.0
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 6.3e-43 180.3 183 51.9
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 1.5e-41 175.6 212 46.2
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 1.6e-38 165.6 200 49.5
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 4.7e-38 164.1 889 27.2
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 4.4e-36 157.5 383 34.7
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 5.5e-31 140.6 225 38.2
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 6.1e-30 137.1 343 33.5
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 4.0e-29 134.4 504 28.0
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 1.2e-28 132.9 575 28.3
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 3.0e-21 108.2 152 46.7
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 5.7e-20 104.0 138 47.1
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 1.4e-18 99.4 580 25.3
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 5.4e-18 97.4 324 28.7
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 1.6e-17 95.9 152 44.1
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 4.4e-12 77.8 137 42.3
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 9.8e-12 76.6 471 25.1
AagrBONN_evm.TU.Sc2ySwM_228.4044 Anthoceros agrestis HOM05D002515 ORTHO05D005796 6.3e-11 73.9 312 25.3
HPP92_019094 Vanilla planifolia HOM05D002036 ORTHO05D001913 2.4e-10 72.0 229 27.9
Pp3c15_3050 Physcomitrium patens HOM05D031362 ORTHO05D002722 5.9e-09 67.4 287 25.4
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 7.8e-09 67.0 171 30.4
Ah.08g213810 Amaranthus hybridus HOM05D002769 ORTHO05D003160 2.3e-08 65.5 896 22.5
Dinv31022 Davidia involucrata HOM05D033086 ORTHO05D005796 3.9e-08 64.7 92 43.5
Dinv31080 Davidia involucrata HOM05D033086 ORTHO05D005796 3.9e-08 64.7 92 43.5
Rhsim04G0156800 Rhododendron simsii HOM05D002515 ORTHO05D002722 5.0e-08 64.3 267 29.6
Rhsim04G0157000 Rhododendron simsii HOM05D002515 ORTHO05D002722 5.0e-08 64.3 267 29.6
Aa31LG10G9580 Aethionema arabicum HOM05D002036 ORTHO05D001913 6.6e-08 63.9 287 25.1
Haze_24092 Corylus avellana HOM05D002515 ORTHO05D002722 8.6e-08 63.5 287 27.5
Mapoly0151s0019 Marchantia polymorpha HOM05D002515 ORTHO05D002722 8.6e-08 63.5 187 27.3
Dinv35605 Davidia involucrata HOM05D002515 ORTHO05D002722 1.1e-07 63.2 271 26.6
Os03g0819700 Oryza sativa ssp. japonica HOM05D002036 ORTHO05D001913 1.9e-07 62.4 259 28.2
Zm00001eb211790 Zea mays HOM05D063750 ORTHO05D001913 3.3e-07 61.6 185 28.1
Gohir.D01G208400 Gossypium hirsutum HOM05D002036 ORTHO05D001913 4.3e-07 61.2 394 25.4
THA.LOC104805416 Tarenaya hassleriana HOM05D002036 ORTHO05D001913 5.6e-07 60.8 299 22.4
GSVIVG01024972001 Vitis vinifera HOM05D002515 ORTHO05D002722 7.3e-07 60.5 271 23.6
Gohir.A01G219300 Gossypium hirsutum HOM05D002036 ORTHO05D001913 2.1e-06 58.9 399 24.8
MBI07_g08924_MAGBIO Magnolia biondii HOM05D002769 ORTHO05D003160 2.8e-06 58.5 270 24.4
ECA236G1034 Erigeron canadensis HOM05D002515 ORTHO05D005057 3.6e-06 58.2 208 27.4
Gorai.009G099300 Gossypium raimondii HOM05D002515 ORTHO05D002722 3.6e-06 58.2 169 30.2
HanXRQChr14g0453801 Helianthus annuus HOM05D002036 ORTHO05D001913 3.6e-06 58.2 245 26.5
MD11G1109700 Malus domestica HOM05D002515 ORTHO05D002722 3.6e-06 58.2 191 27.7
Sabra16G0088100 Salix brachista HOM05D002036 ORTHO05D001913 3.6e-06 58.2 273 27.8
Haze_20717 Corylus avellana HOM05D002036 ORTHO05D001913 4.7e-06 57.8 303 23.8
Gohir.D05G096000 Gossypium hirsutum HOM05D002515 ORTHO05D002722 4.7e-06 57.8 169 30.2
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 4.7e-06 57.8 273 23.8
COL.COLO4_18507 Corchorus olitorius HOM05D002515 ORTHO05D002722 8.0e-06 57.0 176 29.5
MBI14_g20110_MAGBIO Magnolia biondii HOM05D002515 ORTHO05D002722 8.0e-06 57.0 268 25.4
Sopen09g025250 Solanum pennellii HOM05D002769 ORTHO05D003160 8.0e-06 57.0 941 20.9


User provided reference genes

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