Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 0.0e+00 1167.1 662 100.0
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 3.2e-223 778.9 689 66.9
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 9.0e-218 760.8 685 66.1
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 2.1e-214 749.6 660 68.5
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.3e-200 703.7 694 61.4
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 6.0e-190 668.3 664 59.8
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 2.3e-189 666.4 701 63.1
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 3.3e-172 609.4 695 55.8
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 4.2e-159 565.8 692 58.2
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 1.8e-154 550.4 691 52.2
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.0e-144 518.1 441 67.8
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 8.6e-144 515.0 692 50.0
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 1.2e-140 504.6 693 51.1
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 3.7e-139 499.6 694 48.3
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 6.3e-139 498.8 696 53.0
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 3.2e-138 496.5 687 53.9
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 7.0e-138 495.4 692 52.9
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.6e-137 494.2 673 50.4
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 6.6e-136 488.8 624 51.3
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.9e-135 487.3 692 54.8
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 1.8e-133 480.7 605 59.7
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 7.5e-132 475.3 672 50.3
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 1.1e-130 471.5 677 48.0
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 1.4e-130 471.1 654 50.8
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 2.7e-129 466.8 686 48.1
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 4.3e-127 459.5 683 51.2
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.8e-126 456.8 599 52.1
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 1.1e-125 454.9 774 45.3
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 8.9e-125 451.8 622 48.9
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 5.8e-124 449.1 647 49.5
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 1.3e-123 448.0 603 51.1
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 4.9e-123 446.0 615 56.7
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 7.1e-122 442.2 690 45.5
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.2e-121 441.4 686 45.5
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 1.6e-121 441.0 690 45.1
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 7.8e-121 438.7 596 50.7
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 7.8e-121 438.7 594 50.5
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.3e-120 437.2 601 50.6
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 3.0e-120 436.8 648 48.1
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 2.5e-119 433.7 589 49.4
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.5e-119 433.7 624 53.8
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 3.3e-119 433.3 684 44.6
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 7.3e-119 432.2 619 54.0
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.6e-118 431.0 428 67.3
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 2.1e-118 430.6 669 51.0
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 2.8e-118 430.3 713 46.6
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.6e-118 429.9 620 48.4
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 4.7e-118 429.5 682 45.3
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 6.2e-118 429.1 687 50.4
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 6.2e-118 429.1 570 54.7
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 1.1e-117 428.3 602 56.1
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.8e-117 427.6 620 48.1
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 3.4e-116 423.3 631 53.1
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 4.4e-116 422.9 687 44.5
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.6e-116 422.2 620 47.4
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 1.3e-115 421.4 621 47.7
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 1.1e-114 418.3 693 49.9
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 3.2e-114 416.8 669 50.5
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 5.4e-114 416.0 686 49.4
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 5.4e-114 416.0 690 50.0
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 3.5e-113 413.3 659 44.8
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 5.1e-112 409.5 687 44.1
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 4.3e-111 406.4 500 58.6
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.3e-111 405.6 619 50.4
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 2.8e-110 403.7 695 49.2
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 8.1e-110 402.1 686 48.5
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.8e-109 401.0 665 45.1
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 1.8e-109 401.0 713 47.4
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 2.4e-109 400.6 684 43.7
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 2.4e-109 400.6 694 48.3
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 6.8e-109 399.1 696 48.4
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 1.2e-108 398.3 679 42.7
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 1.5e-108 397.9 607 47.0
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 2.0e-108 397.5 597 53.8
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 2.0e-108 397.5 695 43.2
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 1.7e-107 394.4 650 46.6
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 2.9e-107 393.7 541 56.2
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 3.8e-107 393.3 610 50.2
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 6.4e-107 392.5 709 46.0
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 8.4e-107 392.1 680 43.4
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 1.1e-106 391.7 702 43.4
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.4e-106 390.6 619 49.1
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 1.9e-103 380.9 696 45.3
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 3.1e-101 373.6 584 52.1
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 5.3e-101 372.9 666 43.4
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 6.9e-101 372.5 716 45.8
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 1.2e-100 371.7 598 46.5
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 1.2e-100 371.7 679 41.7
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 2.2e-99 367.5 681 41.7
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 6.4e-99 365.9 584 51.9
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 1.2e-97 361.7 558 51.1
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 2.1e-97 360.9 571 51.7
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 3.5e-97 360.1 597 48.6
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 6.0e-97 359.4 614 48.5
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 2.3e-96 357.5 501 54.9
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 4.3e-95 353.2 664 41.7
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 4.8e-94 349.7 527 49.0
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 2.4e-93 347.4 608 48.8
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.4e-93 347.4 868 35.8
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 4.5e-92 343.2 570 43.9
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 5.8e-92 342.8 667 46.0
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 1.7e-91 341.3 584 49.7
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 9.3e-90 335.5 431 51.7
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 2.1e-89 334.3 584 50.2
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.0e-88 332.0 697 40.3
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 1.0e-88 332.0 489 55.0
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 1.0e-88 332.0 684 44.2
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 1.3e-88 331.6 686 42.4
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 1.9e-87 327.8 594 48.5
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 4.3e-87 326.6 663 44.0
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 2.1e-86 324.3 532 50.9
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 2.8e-86 323.9 588 49.5
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 4.8e-86 323.2 689 44.4
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 1.1e-85 322.0 631 41.2
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.4e-85 321.6 520 53.1
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 1.8e-85 321.2 583 49.4
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 4.0e-85 320.1 618 47.1
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 1.6e-81 308.1 597 46.4
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 2.3e-80 304.3 525 46.7
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 2.3e-80 304.3 501 49.3
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 3.9e-80 303.5 622 44.9
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 3.9e-80 303.5 476 51.9
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 5.1e-80 303.1 525 42.1
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 3.7e-78 297.0 575 47.5
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 5.8e-76 289.7 686 43.4
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 7.6e-76 289.3 303 59.4
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 1.7e-75 288.1 565 46.7
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 2.9e-75 287.3 633 42.8
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 3.8e-75 287.0 569 46.4
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.1e-74 285.4 597 44.7
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 2.5e-74 284.3 462 53.0
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 9.3e-74 282.3 705 41.0
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 2.8e-62 244.2 520 39.0
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 7.9e-57 226.1 369 46.6
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 5.1e-56 223.4 401 44.9
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 5.0e-51 206.8 425 39.5
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 2.3e-48 198.0 367 51.5
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 1.3e-46 192.2 397 38.5
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 4.1e-45 187.2 166 65.7
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 4.4e-39 167.2 390 46.2
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 7.5e-39 166.4 274 43.1
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.4e-37 162.2 173 58.4
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 1.4e-37 162.2 112 75.9
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 2.0e-36 158.3 424 33.3
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 5.0e-35 153.7 410 36.1
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 6.5e-35 153.3 419 32.2
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 2.7e-33 147.9 568 30.5
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 1.5e-31 142.1 100 77.0
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 7.0e-29 133.3 92 77.2
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 5.0e-27 127.1 134 57.5
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 2.5e-26 124.8 370 37.0
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 5.7e-23 113.6 532 29.7
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 7.0e-21 106.7 449 27.4
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-19 102.4 68 82.4
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.5e-18 96.3 66 78.8
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 8.9e-16 89.7 55 76.4
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 5.8e-15 87.0 76 64.5
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.9e-14 84.7 50 90.0
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.4e-14 83.6 59 76.3
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.4e-14 83.6 58 77.6
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 6.4e-14 83.6 62 69.4
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.3e-14 83.2 70 67.1
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 8.3e-14 83.2 50 88.0
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.9e-13 82.0 70 67.1
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.2e-13 81.3 56 78.6
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.6e-11 73.2 50 76.0
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.1e-10 72.8 50 76.0
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-10 72.4 50 76.0
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.5e-10 71.6 50 74.0
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 4.3e-10 70.9 76 51.3
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 3.6e-09 67.8 46 78.3
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 3.6e-09 67.8 93 43.0
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 4.7e-09 67.4 74 55.4
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 1.1e-08 66.2 345 27.0
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.8e-08 65.5 39 84.6
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.2e-08 63.9 39 82.1
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 8.9e-08 63.2 37 86.5
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-07 62.4 39 79.5
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-07 62.4 58 65.5
Gohir.D06G084232 Gossypium hirsutum HOM05D003628 ORTHO05D016264 2.6e-07 61.6 37 83.8
Gohir.D01G077750 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.4e-07 60.8 39 79.5
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.5e-07 60.1 53 62.3
MBI04_g25319_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 1.7e-06 58.9 47 63.8
Cre12.g514550 Chlamydomonas reinhardtii HOM05D003628 ORTHO05D004253 2.2e-06 58.5 95 36.8


User provided reference genes

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