Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 6.1e-211 737.3 383 100.0
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.2e-199 698.4 383 94.8
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 2.5e-148 529.3 383 74.9
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 5.3e-138 495.0 372 72.3
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.2e-135 485.3 339 75.5
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 5.0e-128 461.8 387 64.1
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 8.5e-128 461.1 377 65.8
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 3.6e-126 455.7 331 73.4
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 1.0e-120 437.6 315 73.7
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 1.4e-117 427.2 377 61.8
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 7.5e-116 421.4 385 59.0
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 1.3e-115 420.6 386 59.8
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.2e-115 419.9 377 59.4
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 3.7e-115 419.1 379 60.2
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 8.2e-115 417.9 378 60.3
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 5.3e-114 415.2 377 59.7
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 5.3e-114 415.2 377 59.7
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 1.2e-113 414.1 375 60.5
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.2e-113 414.1 379 59.4
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 2.7e-113 412.9 377 58.6
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.3e-112 410.6 377 58.4
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.7e-112 410.2 379 59.9
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 1.7e-112 410.2 378 59.3
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.8e-112 409.1 377 58.9
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.8e-112 409.1 385 60.0
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 8.5e-112 407.9 379 59.6
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.1e-111 407.5 377 58.9
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.1e-111 407.5 375 60.5
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.2e-111 406.0 379 58.8
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 4.2e-111 405.6 387 58.9
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.2e-111 405.6 377 58.4
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.6e-110 402.5 379 58.3
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.8e-109 398.3 379 56.7
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.5e-108 397.1 379 57.8
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.5e-108 397.1 381 59.8
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 1.5e-108 397.1 379 58.8
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 2.0e-108 396.7 387 56.3
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 2.8e-107 392.9 376 59.0
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 6.3e-107 391.7 382 56.3
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 8.3e-107 391.3 367 58.3
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 8.3e-107 391.3 379 59.1
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 3.1e-106 389.4 391 55.8
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.2e-105 387.5 375 57.3
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 5.9e-105 385.2 383 56.4
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 7.7e-105 384.8 384 57.6
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 1.0e-104 384.4 379 59.1
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.7e-104 383.6 379 54.9
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 3.8e-104 382.5 376 56.4
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 6.5e-104 381.7 379 54.9
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 8.5e-104 381.3 420 53.3
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 4.2e-103 379.0 375 55.7
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 1.2e-102 377.5 355 59.7
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 4.7e-102 375.6 376 55.9
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 6.1e-102 375.2 348 58.6
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 6.1e-102 375.2 363 58.7
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 2.3e-101 373.2 329 62.9
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 8.8e-101 371.3 381 55.6
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.2e-100 370.9 366 57.9
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 2.0e-100 370.2 378 54.2
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 2.6e-100 369.8 386 55.2
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 9.8e-100 367.9 331 61.3
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.3e-99 367.5 385 54.5
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 2.2e-99 366.7 386 54.4
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.8e-99 366.3 379 56.7
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 8.3e-99 364.8 383 58.0
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.2e-97 360.9 387 51.2
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 1.6e-97 360.5 362 53.9
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 2.7e-97 359.8 331 63.7
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 1.3e-96 357.5 383 53.0
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 1.3e-96 357.5 388 53.4
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 2.9e-96 356.3 386 52.6
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 6.6e-96 355.1 376 53.5
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 2.5e-95 353.2 376 54.0
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 4.3e-95 352.4 378 50.3
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 1.2e-94 350.9 377 54.6
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 1.2e-94 350.9 383 52.0
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 1.6e-94 350.5 376 51.9
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.5e-92 344.0 334 55.1
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 3.4e-92 342.8 383 48.3
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 4.4e-92 342.4 314 58.0
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 9.8e-92 341.3 385 52.5
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 9.8e-92 341.3 383 52.2
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 2.2e-91 340.1 385 52.2
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 3.7e-91 339.3 394 51.5
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 1.1e-90 337.8 385 51.7
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 1.4e-90 337.4 383 50.1
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 4.1e-90 335.9 378 48.4
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.2e-89 334.3 379 48.8
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.2e-89 334.3 379 48.8
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.6e-89 334.0 381 48.8
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 2.0e-89 333.6 377 49.1
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 2.7e-89 333.2 375 51.5
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 1.3e-88 330.9 385 50.9
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 1.7e-88 330.5 378 50.0
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.7e-88 330.5 377 48.8
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 2.3e-88 330.1 378 47.6
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 3.0e-88 329.7 374 49.7
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 6.6e-88 328.6 365 50.7
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 1.5e-87 327.4 378 48.4
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 7.3e-87 325.1 378 47.6
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 7.3e-87 325.1 389 52.4
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 1.2e-86 324.3 378 49.2
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 2.1e-86 323.6 378 47.4
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 2.1e-86 323.6 378 47.4
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 3.6e-86 322.8 375 48.5
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 4.7e-86 322.4 378 47.6
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 6.2e-86 322.0 378 47.4
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 6.2e-86 322.0 378 47.4
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 8.0e-86 321.6 360 51.1
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 1.2e-84 317.8 378 47.4
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 5.8e-84 315.5 361 48.5
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 9.8e-84 314.7 376 47.3
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 9.8e-84 314.7 376 47.3
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 9.8e-84 314.7 376 47.3
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 2.9e-83 313.2 343 51.3
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 7.0e-82 308.5 385 44.9
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 9.2e-82 308.1 378 47.1
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.9e-80 302.8 386 44.8
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 3.6e-78 296.2 364 47.8
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 8.1e-78 295.0 341 49.3
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 7.5e-76 288.5 360 47.2
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 1.7e-67 260.8 335 44.8
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 3.7e-67 259.6 288 49.0
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 3.2e-66 256.5 294 49.7
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 6.0e-65 252.3 354 42.4
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 5.1e-64 249.2 384 41.7
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 4.3e-63 246.1 386 41.5
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.2e-59 233.8 293 46.8
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 6.9e-53 212.2 334 39.2
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 4.5e-52 209.5 206 53.9
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 3.9e-40 169.9 131 72.5
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 1.4e-37 161.4 136 64.7
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 8.7e-32 142.1 264 36.4
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 8.7e-32 142.1 157 49.0
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.9e-31 141.0 142 49.3
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.8e-29 134.4 144 45.8
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 2.0e-28 131.0 385 32.7
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.5e-28 129.8 136 48.5
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.0e-27 128.6 208 41.8
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 1.3e-27 128.3 377 32.6
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 3.8e-27 126.7 251 35.9
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 4.2e-26 123.2 107 56.1
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 5.5e-26 122.9 131 47.3
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 1.2e-20 105.1 386 27.7
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.5e-20 103.2 88 62.5
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.5e-20 103.2 88 62.5
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.9e-19 100.5 128 42.2
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.4e-18 98.2 362 25.4
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.9e-18 97.8 384 24.5
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 2.2e-14 84.3 119 43.7
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 1.1e-13 82.0 270 28.1
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 1.8e-13 81.3 82 47.6
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 3.4e-12 77.0 71 62.0
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 4.5e-12 76.6 69 56.5
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 5.9e-12 76.3 71 62.0
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 2.2e-11 74.3 71 59.2
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 4.2e-10 70.1 59 61.0
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 4.2e-10 70.1 59 59.3
Oeu022108.1 Olea europaea HOM05D002428 ORTHO05D005085 4.7e-09 66.6 61 59.0
Oeu051052.1 Olea europaea HOM05D002428 ORTHO05D005085 1.0e-08 65.5 71 56.3


User provided reference genes

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