Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.8e-43 178.7 84 100.0
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.9e-41 171.4 85 96.5
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.9e-41 171.4 84 95.2
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.8e-21 104.0 80 61.2
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.8e-21 104.0 80 61.2
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 5.8e-21 104.0 80 61.2
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 1.1e-19 99.8 84 61.9
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 1.9e-19 99.0 80 58.8
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 2.4e-19 98.6 78 65.4
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 2.7e-18 95.1 81 55.6
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 4.6e-18 94.4 74 64.9
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 1.3e-17 92.8 81 58.0
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 1.7e-17 92.4 84 56.0
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 3.0e-17 91.7 74 55.4
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.5e-16 88.6 79 58.2
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.3e-16 87.8 82 57.3
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 4.3e-16 87.8 82 57.3
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 7.3e-16 87.0 83 50.6
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 7.3e-16 87.0 84 58.3
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 9.5e-16 86.7 83 56.6
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 9.5e-16 86.7 83 56.6
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.1e-14 83.2 58 67.2
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 4.0e-14 81.3 84 48.8
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 4.0e-14 81.3 75 54.7
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 5.2e-14 80.9 74 56.8
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 5.2e-14 80.9 84 47.6
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 6.8e-14 80.5 83 49.4
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 6.8e-14 80.5 81 55.6
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 8.9e-14 80.1 84 61.9
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 1.2e-13 79.7 78 50.0
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.2e-13 79.7 77 50.6
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.2e-13 79.7 75 57.3
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.5e-13 79.3 83 48.2
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 1.5e-13 79.3 83 48.2
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.5e-13 79.3 80 52.5
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 2.0e-13 79.0 84 53.6
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 3.4e-13 78.2 83 48.2
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.4e-13 78.2 83 48.2
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 4.4e-13 77.8 83 48.2
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 5.8e-13 77.4 78 48.7
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 7.6e-13 77.0 83 45.8
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 7.6e-13 77.0 77 51.9
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 9.9e-13 76.6 90 47.8
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 9.9e-13 76.6 78 52.6
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.3e-12 76.3 84 53.6
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.3e-12 76.3 80 50.0
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 1.3e-12 76.3 78 50.0
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.9e-12 75.1 74 51.4
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 4.9e-12 74.3 79 48.1
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 4.9e-12 74.3 76 52.6
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 6.4e-12 73.9 75 48.0
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 8.4e-12 73.6 59 55.9
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 1.1e-11 73.2 79 48.1
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 1.1e-11 73.2 78 46.2
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 1.1e-11 73.2 80 43.8
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 1.9e-11 72.4 75 46.7
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 1.9e-11 72.4 80 51.2
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.4e-11 72.0 84 48.8
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 4.1e-11 71.2 84 46.4
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 5.4e-11 70.9 82 48.8
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 7.1e-11 70.5 84 42.9
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 1.2e-10 69.7 77 49.4
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.2e-10 69.7 78 48.7
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 1.2e-10 69.7 75 46.7
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 1.6e-10 69.3 75 42.7
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.6e-10 69.3 50 54.0
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 1.6e-10 69.3 50 54.0
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 2.1e-10 68.9 72 43.1
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 2.7e-10 68.6 72 50.0
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 2.7e-10 68.6 72 50.0
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 2.7e-10 68.6 75 45.3
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 3.5e-10 68.2 97 42.3
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 4.6e-10 67.8 77 48.1
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 7.8e-10 67.0 84 46.4
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 7.8e-10 67.0 67 52.2
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 1.3e-09 66.2 73 49.3
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 1.3e-09 66.2 78 46.2
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 1.7e-09 65.9 86 46.5
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 2.3e-09 65.5 73 50.7
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 3.9e-09 64.7 81 45.7
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 3.9e-09 64.7 82 42.7
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 6.6e-09 63.9 76 46.1
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 8.7e-09 63.5 78 43.6
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 1.1e-08 63.2 70 45.7
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 1.1e-08 63.2 43 53.5
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.5e-08 62.8 45 60.0
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 1.5e-08 62.8 82 43.9
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 1.9e-08 62.4 85 51.8
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 1.9e-08 62.4 44 61.4
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 2.5e-08 62.0 74 43.2
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 3.3e-08 61.6 90 42.2
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 3.3e-08 61.6 80 45.0
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 4.3e-08 61.2 38 60.5
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 7.3e-08 60.5 81 44.4
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 7.3e-08 60.5 41 58.5
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.2e-07 59.7 79 44.3
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 1.6e-07 59.3 65 41.5
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.6e-07 59.3 59 54.2
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 2.1e-07 58.9 50 56.0
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 3.6e-07 58.2 87 43.7
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 3.6e-07 58.2 73 43.8
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 1.1e-06 56.6 36 61.1
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 1.4e-06 56.2 67 44.8
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 1.4e-06 56.2 79 48.1
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 2.4e-06 55.5 42 50.0
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 4.0e-06 54.7 86 39.5
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 5.2e-06 54.3 82 40.2
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 5.2e-06 54.3 36 55.6
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 9.0e-06 53.5 37 64.9
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 9.0e-06 53.5 37 64.9
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 9.0e-06 53.5 37 64.9


User provided reference genes

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