Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 2367.8 1214 100.0
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 2012.7 1549 72.9
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1564.7 1139 74.8
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1455.7 1442 58.5
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1440.6 1551 54.2
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1415.2 1423 57.5
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1284.6 1438 52.2
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1280.0 1377 54.2
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1204.1 1508 47.7
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1203.0 1392 50.1
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1196.4 1473 49.2
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1163.3 1411 49.7
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1162.9 1457 49.1
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1162.1 1380 49.9
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1157.1 1400 49.9
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1151.3 1402 49.9
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1146.0 1403 50.2
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1144.4 1434 49.2
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1142.9 1372 50.3
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1135.9 1534 46.2
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1128.6 1569 46.1
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1122.8 1368 49.1
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1119.0 1540 46.0
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1117.8 1417 49.6
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1115.1 1488 46.4
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 1079.7 1556 44.6
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 8.2e-310 1067.4 1413 46.5
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 8.2e-310 1067.4 1343 48.5
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 1.5e-308 1063.1 1369 47.2
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.5e-308 1061.6 1343 48.5
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 1.0e-307 1060.4 1389 46.2
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 3.8e-307 1058.5 1390 46.1
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 1.1e-306 1057.0 1398 47.1
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 1.4e-306 1056.6 1510 44.3
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 6.1e-305 1051.2 1393 46.6
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 1.8e-304 1049.7 1436 47.5
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 2.3e-304 1049.3 1358 47.7
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 6.7e-304 1047.7 1510 43.8
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 1.7e-302 1043.1 1509 43.5
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 1.2e-300 1036.9 1580 42.3
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 2.0e-300 1036.2 1448 45.4
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 2.6e-300 1035.8 1547 45.0
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 2.9e-299 1032.3 1400 46.1
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 3.8e-299 1031.9 1411 45.7
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 5.5e-298 1028.1 1425 46.1
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 9.4e-298 1027.3 1472 44.3
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 1.2e-297 1026.9 1428 45.1
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 4.0e-296 1021.9 1430 45.2
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 5.2e-296 1021.5 1374 46.0
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 8.8e-296 1020.8 1477 45.2
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 7.5e-295 1017.7 1539 42.5
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 1.7e-294 1016.5 1390 45.7
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 7.7e-292 1007.7 1470 44.5
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 7.7e-292 1007.7 1299 48.4
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 5.5e-290 1001.5 1336 47.5
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 6.1e-289 998.0 1503 42.8
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 1.2e-287 993.8 1318 47.7
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 1.5e-287 993.4 1447 44.6
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 4.1e-285 985.3 1567 41.2
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 1.3e-283 980.3 1518 42.2
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 1.2e-281 973.8 1359 46.1
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 3.6e-281 972.2 1345 46.1
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 2.0e-279 966.5 1341 46.0
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 5.7e-279 964.9 1610 39.9
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 9.8e-279 964.1 1368 45.0
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 4.9e-278 961.8 1385 45.3
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 9.2e-277 957.6 1234 49.4
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 7.7e-276 954.5 1376 45.2
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.8e-275 952.2 1009 53.2
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 5.6e-274 948.3 1319 45.8
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 3.6e-273 945.7 1361 45.2
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 3.4e-271 939.1 1572 40.9
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 2.9e-270 936.0 1475 42.4
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 7.3e-266 921.4 1817 36.5
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 8.0e-265 917.9 1322 44.6
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 4.0e-264 915.6 1298 45.9
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 1.4e-261 907.1 1407 41.2
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 7.0e-261 904.8 1474 41.0
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 5.0e-259 898.7 1427 42.0
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 2.8e-257 892.9 1286 44.3
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 4.1e-253 879.0 1016 50.1
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.7e-252 876.3 1339 43.7
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 7.3e-250 868.2 1484 41.2
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 2.3e-248 863.2 1295 42.4
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 1.7e-246 857.1 1294 42.1
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 7.8e-244 848.2 1390 41.2
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 1.5e-239 833.9 1190 45.7
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 2.1e-236 823.5 1228 45.0
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 3.6e-233 812.8 1096 46.0
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.5e-223 780.8 489 83.8
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.4e-216 757.7 815 54.1
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 9.3e-213 745.0 1349 39.7
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 4.8e-177 626.3 2319 27.9
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 3.1e-176 623.6 1276 35.0
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 1.9e-173 614.4 854 44.8
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 1.6e-172 611.3 853 45.5
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 9.8e-170 602.1 1082 37.3
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 9.2e-152 542.3 1282 35.0
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 8.9e-147 525.8 1271 33.2
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 1.2e-146 525.4 1484 30.3
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 5.4e-144 516.5 564 52.5
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 6.8e-139 499.6 1191 34.3
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 2.9e-121 441.0 814 37.1
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.3e-118 432.2 924 34.5
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 5.6e-117 426.8 318 73.9
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.3e-102 378.3 421 55.1
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.1e-96 359.4 242 81.8
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 9.3e-96 356.3 402 51.2
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 3.7e-92 344.4 415 50.4
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 1.1e-88 332.8 301 63.1
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 4.6e-87 327.4 1428 26.0
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 4.8e-84 317.4 324 53.4
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 5.0e-73 280.8 1560 23.5
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 5.7e-69 267.3 527 34.0
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 3.2e-64 251.5 394 42.1
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 5.3e-59 234.2 1435 22.9
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 2.7e-58 231.9 408 41.7
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 3.8e-57 228.0 973 26.2
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.1e-51 208.4 742 29.4
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.0e-49 203.4 126 82.5
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 6.6e-49 200.7 242 47.5
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 5.2e-46 191.0 168 56.5
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 7.8e-42 177.2 126 73.8
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.5e-40 172.9 129 72.1
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 8.0e-31 140.6 109 68.8
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.4e-30 139.8 387 30.7
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.6e-29 135.6 275 34.9
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 4.4e-29 134.8 551 27.0
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 8.9e-22 110.5 102 56.9
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 2.6e-21 109.0 210 35.7
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 8.3e-20 104.0 71 70.4
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 4.6e-18 98.2 141 38.3
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 3.9e-17 95.1 174 35.1
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 1.1e-16 93.6 86 57.0
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-16 92.4 210 29.5
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 9.5e-16 90.5 173 34.1
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 7.6e-13 80.9 96 53.1
vmacro07283 Vaccinium macrocarpon HOM05D000340 ORTHO05D012132 1.6e-10 73.2 191 31.4
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 7.8e-10 70.9 77 53.2
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 6.6e-09 67.8 76 48.7
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 3.3e-08 65.5 53 60.4
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 4.3e-08 65.1 49 63.3
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 3.1e-06 58.9 198 27.3


User provided reference genes

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