Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 6.1e-43 177.2 96 100.0
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 5.1e-21 104.4 135 52.6
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.1e-18 96.7 96 63.5
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 7.6e-17 90.5 96 62.5
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 7.6e-17 90.5 96 61.5
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 1.7e-16 89.4 96 58.3
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 1.7e-16 89.4 96 61.5
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 2.9e-16 88.6 96 60.4
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 2.9e-16 88.6 96 60.4
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 6.4e-16 87.4 96 59.4
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.4e-15 86.3 96 56.2
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.4e-15 85.5 96 56.2
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 2.4e-15 85.5 96 56.2
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 3.2e-15 85.1 96 55.2
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 3.2e-15 85.1 96 55.2
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 3.2e-15 85.1 96 55.2
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 4.1e-15 84.7 96 55.2
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 5.4e-15 84.3 96 55.2
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 5.4e-15 84.3 96 55.2
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 7.1e-15 84.0 96 58.3
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 7.1e-15 84.0 96 57.3
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 7.1e-15 84.0 96 55.2
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 9.2e-15 83.6 96 55.2
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 1.2e-14 83.2 96 56.2
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 1.2e-14 83.2 96 54.2
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 1.2e-14 83.2 96 55.2
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 1.2e-14 83.2 96 55.2
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 1.2e-14 83.2 96 55.2
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 1.6e-14 82.8 96 57.3
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 1.6e-14 82.8 96 54.2
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 2.7e-14 82.0 96 55.2
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 2.7e-14 82.0 96 55.2
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 2.7e-14 82.0 96 56.2
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.7e-14 82.0 102 52.0
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 2.7e-14 82.0 96 55.2
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 2.7e-14 82.0 95 52.6
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 3.5e-14 81.6 96 57.3
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 3.5e-14 81.6 96 55.2
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 3.5e-14 81.6 96 56.2
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 3.5e-14 81.6 96 55.2
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 3.5e-14 81.6 82 62.2
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 6.0e-14 80.9 96 54.2
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 6.0e-14 80.9 96 55.2
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 7.8e-14 80.5 96 54.2
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 7.8e-14 80.5 96 54.2
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 7.8e-14 80.5 96 55.2
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 1.0e-13 80.1 96 55.2
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 1.0e-13 80.1 96 56.2
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 1.0e-13 80.1 96 57.3
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 1.0e-13 80.1 96 57.3
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 1.0e-13 80.1 96 54.2
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 1.0e-13 80.1 96 52.1
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 1.0e-13 80.1 96 54.2
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 1.0e-13 80.1 96 53.1
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 1.7e-13 79.3 96 56.2
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 2.3e-13 79.0 96 54.2
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 2.3e-13 79.0 96 52.1
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 2.3e-13 79.0 96 53.1
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 2.3e-13 79.0 96 54.2
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 3.0e-13 78.6 96 53.1
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 3.0e-13 78.6 96 53.1
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 3.9e-13 78.2 96 52.1
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 5.1e-13 77.8 96 53.1
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 6.6e-13 77.4 96 52.1
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 6.6e-13 77.4 96 53.1
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 8.6e-13 77.0 88 55.7
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 8.6e-13 77.0 96 52.1
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 8.6e-13 77.0 96 57.3
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 8.6e-13 77.0 96 52.1
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 8.6e-13 77.0 96 53.1
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 8.6e-13 77.0 96 52.1
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 8.6e-13 77.0 96 52.1
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 1.1e-12 76.6 96 54.2
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 1.1e-12 76.6 96 53.1
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 1.9e-12 75.9 96 54.2
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 1.9e-12 75.9 96 53.1
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 1.9e-12 75.9 96 53.1
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 2.5e-12 75.5 96 53.1
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 2.5e-12 75.5 96 55.2
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 3.3e-12 75.1 96 52.1
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 4.3e-12 74.7 96 53.1
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 4.3e-12 74.7 97 53.6
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 4.3e-12 74.7 96 55.2
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 5.6e-12 74.3 96 56.2
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 5.6e-12 74.3 96 51.0
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 7.3e-12 73.9 88 59.1
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 9.6e-12 73.6 97 52.6
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 9.6e-12 73.6 97 52.6
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 9.6e-12 73.6 96 51.0
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 9.6e-12 73.6 96 51.0
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 1.2e-11 73.2 96 51.0
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 2.1e-11 72.4 96 52.1
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 4.7e-11 71.2 88 52.3
CSS0008657 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 4.7e-11 71.2 60 68.3
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 1.1e-10 70.1 110 45.5
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 1.1e-10 70.1 110 45.5
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 1.1e-10 70.1 96 50.0
CSS0022702 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.4e-10 68.9 52 75.0
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 5.2e-10 67.8 96 51.0
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 8.9e-10 67.0 85 51.8
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 8.9e-10 67.0 85 51.8
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 1.5e-09 66.2 127 42.5
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 2.6e-09 65.5 82 56.1
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 3.4e-09 65.1 81 51.9
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 6.4e-08 60.8 97 46.4
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 1.1e-07 60.1 97 46.4
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 1.1e-07 60.1 74 48.6
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 1.9e-07 59.3 96 44.8
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 1.9e-07 59.3 96 44.8
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 2.4e-07 58.9 80 52.5
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 3.2e-07 58.5 96 44.8
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 3.2e-07 58.5 96 44.8
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 4.6e-06 54.7 99 44.4


User provided reference genes

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