Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1724.5 864 100.0
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1458.0 731 98.9
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1436.4 866 83.4
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1394.8 967 75.5
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1361.3 864 77.5
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1350.9 864 77.7
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1333.2 864 76.7
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1320.4 868 77.4
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1318.1 868 77.3
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1318.1 864 77.3
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1316.6 859 77.1
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1315.8 867 75.5
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1308.1 860 77.0
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1305.8 857 76.8
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1305.4 896 75.0
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1300.8 868 76.2
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1300.4 837 77.1
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1299.3 865 75.3
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1297.7 873 75.6
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1297.3 837 77.2
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1297.0 856 75.0
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1296.6 854 74.9
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1290.8 854 74.5
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1285.4 862 74.6
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1284.2 867 74.6
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1276.2 863 74.2
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1275.0 866 73.9
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1272.7 870 73.7
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1272.7 867 74.6
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1271.5 868 75.1
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1271.1 870 74.1
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1270.4 856 73.6
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1268.4 856 73.6
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1267.3 822 77.1
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1264.2 868 74.9
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1261.5 874 73.9
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1261.1 868 74.0
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1260.0 863 73.0
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1258.0 860 73.4
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1256.5 865 73.8
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1254.2 864 72.7
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1246.1 864 72.6
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1245.0 865 72.7
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1244.6 865 72.7
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1243.0 865 72.6
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1242.3 885 71.6
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1241.5 860 71.6
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1239.9 861 73.1
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 0.0e+00 1239.9 920 68.6
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1239.2 867 71.6
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1237.6 865 72.8
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1236.5 869 71.5
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1236.1 854 72.4
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1236.1 860 72.9
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1234.9 869 71.5
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1232.2 835 74.3
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1231.9 953 68.7
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1228.8 869 71.7
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1227.2 866 72.6
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1226.5 875 72.6
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1223.0 861 71.1
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1218.8 776 78.6
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1215.3 839 72.3
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1215.3 773 78.5
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1211.8 867 71.0
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1206.8 888 69.9
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1199.9 863 70.7
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1198.0 864 70.9
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1192.2 866 70.3
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1192.2 767 78.0
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1191.8 866 70.1
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1188.3 868 68.8
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1187.9 864 68.5
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1186.4 862 69.3
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1179.9 861 68.8
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1179.5 938 66.0
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1176.8 866 68.7
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1171.8 875 68.8
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 0.0e+00 1171.0 891 68.4
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 0.0e+00 1168.7 837 70.3
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 0.0e+00 1161.4 944 65.3
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1160.2 875 68.8
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1159.8 770 75.2
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1158.7 865 68.0
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 0.0e+00 1157.1 851 68.9
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 0.0e+00 1156.7 1020 61.8
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1147.5 866 67.6
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1139.4 864 66.7
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 0.0e+00 1139.4 744 75.9
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1137.5 869 66.9
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1137.5 869 66.9
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1127.1 864 65.5
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 0.0e+00 1123.6 706 78.9
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1120.1 865 65.9
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1109.7 864 65.4
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1109.4 843 66.5
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1108.2 842 67.1
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1103.6 866 65.4
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1100.5 866 65.6
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1099.0 845 66.3
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1099.0 866 65.6
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1099.0 845 66.3
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 0.0e+00 1077.4 833 65.8
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.9e-308 1062.4 696 77.7
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 1.6e-299 1032.7 741 69.0
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 3.3e-297 1025.0 795 65.8
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 4.1e-295 1018.1 724 71.3
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 1.5e-294 1016.1 861 62.1
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 5.9e-294 1014.2 723 70.3
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 2.9e-293 1011.9 861 62.3
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 3.2e-292 1008.4 860 62.2
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.4e-287 993.0 742 67.8
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 1.5e-286 989.6 844 60.8
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 6.8e-266 921.0 673 69.2
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 8.6e-253 877.5 534 80.7
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 5.9e-246 854.7 865 55.4
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 2.3e-242 842.8 779 59.8
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 1.9e-239 833.2 853 53.6
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 3.8e-224 782.3 547 72.6
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.7e-221 773.5 859 49.4
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.1e-218 764.2 872 48.7
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 1.1e-210 737.6 868 46.8
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.3e-205 719.9 481 74.4
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 2.4e-194 683.3 761 50.9
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 4.3e-180 636.0 466 70.4
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 3.7e-179 632.9 391 81.3
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 5.0e-176 622.5 496 67.9
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 4.6e-174 615.9 457 68.1
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.3e-171 607.8 470 67.0
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 2.9e-168 596.7 539 59.7
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 9.4e-167 591.7 393 75.3
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.2e-163 580.5 471 63.5
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 8.2e-163 578.6 740 47.3
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.2e-161 574.7 813 43.4
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 2.0e-132 477.6 462 55.8
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 7.8e-129 465.7 387 61.0
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 3.0e-128 463.8 354 68.1
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 1.6e-126 458.0 299 73.9
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.4e-122 444.9 367 64.9
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 8.6e-120 435.6 314 70.7
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 4.7e-118 429.9 317 69.4
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 3.8e-99 367.1 321 59.2
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 2.4e-98 364.4 290 63.4
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 4.2e-98 363.6 207 85.0
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 3.1e-93 347.4 250 71.6
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 5.5e-74 283.5 223 68.2
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 2.0e-68 265.0 178 73.0
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 9.4e-66 256.1 186 66.7
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 1.1e-61 242.7 159 79.9
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.4e-53 215.7 159 70.4
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 4.1e-53 214.2 269 49.4
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.0e-51 209.5 130 80.0
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 6.7e-48 196.8 600 29.0
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 4.7e-41 174.1 109 78.9
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 2.6e-31 141.7 125 60.8
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 4.4e-31 141.0 128 60.9
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 7.5e-31 140.2 72 97.2
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 1.7e-27 129.0 117 60.7
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.5e-23 115.9 87 70.1
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 5.4e-21 107.5 78 74.4
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 3.3e-18 98.2 94 58.5
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 6.1e-17 94.0 69 66.7
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 2.0e-15 89.0 58 72.4
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 1.7e-14 85.9 71 63.4
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 4.7e-09 67.8 35 82.9
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 4.7e-09 67.8 35 82.9
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 4.7e-09 67.8 35 82.9
Oeu032726.1 Olea europaea HOM05D004192 ORTHO05D004917 3.1e-08 65.1 85 55.3
Rhsim01G0135300 Rhododendron simsii HOM05D000781 ORTHO05D000643 3.4e-07 61.6 49 69.4
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 3.4e-07 61.6 47 66.0
TAR633G0581 Trochodendron aralioides HOM05D004192 ORTHO05D004917 1.3e-06 59.7 60 53.3
AL6G39020 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 3.7e-06 58.2 35 74.3
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 4.9e-06 57.8 44 65.9


User provided reference genes

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