Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020228 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 8.2e-82 307.0 154 100.0
CSS0043490 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.7e-55 219.5 181 66.3
CSS0008944 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.1e-49 200.3 165 66.1
CSS0037655 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 3.5e-48 195.3 158 67.7
CSS0001756 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.2e-43 180.3 147 66.0
CSS0038488 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 2.5e-38 162.5 156 60.9
Actinidia03928 Actinidia chinensis HOM05D002156 ORTHO05D002328 3.1e-36 155.6 152 57.2
vmacro07661 Vaccinium macrocarpon HOM05D002156 ORTHO05D002328 7.6e-35 151.0 113 69.9
Hma1.2p1_1039F.1_g250900 Hydrangea macrophylla HOM05D002156 ORTHO05D002328 1.2e-32 143.7 117 58.1
Rhsim03G0050200 Rhododendron simsii HOM05D002156 ORTHO05D002328 2.1e-32 142.9 113 63.7
CSS0046058 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.7e-31 139.8 124 64.5
Lj1A1067G36 Lonicera japonica HOM05D002156 ORTHO05D002328 4.7e-29 131.7 114 55.3
CiPaw.09G168300 Carya illinoinensis HOM05D002156 ORTHO05D002328 4.0e-28 128.6 117 57.3
Cpa.g.sc161.28 Carica papaya HOM05D002156 ORTHO05D002328 8.9e-28 127.5 124 52.4
MD12G1009700 Malus domestica HOM05D002156 ORTHO05D002328 8.9e-28 127.5 118 54.2
GSVIVG01025814001 Vitis vinifera HOM05D002156 ORTHO05D002328 1.2e-27 127.1 117 56.4
Duzib128G0733 Durio zibethinus HOM05D002156 ORTHO05D002328 4.4e-27 125.2 115 52.2
MD09G1231100 Malus domestica HOM05D002156 ORTHO05D002328 7.6e-27 124.4 117 53.0
TWI32G0999 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 7.6e-27 124.4 140 51.4
Duzib106G2010 Durio zibethinus HOM05D002156 ORTHO05D002328 1.3e-26 123.6 115 53.9
Thecc.05G243200 Theobroma cacao HOM05D002156 ORTHO05D002328 1.3e-26 123.6 117 50.4
MD14G1007100 Malus domestica HOM05D002156 ORTHO05D002328 2.2e-26 122.9 117 52.1
Ciclev10019878m.g Citrus clementina HOM05D002156 ORTHO05D002328 4.9e-26 121.7 123 53.7
Prupe.7G011900 Prunus persica HOM05D002156 ORTHO05D002328 8.4e-26 120.9 117 52.1
Cfa017704 Carpinus fangiana HOM05D002156 ORTHO05D002328 1.1e-25 120.6 114 53.5
MD12G1009900 Malus domestica HOM05D002156 ORTHO05D002328 1.1e-25 120.6 117 49.6
Gohir.D11G241900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 1.4e-25 120.2 114 53.5
Gorai.007G256200 Gossypium raimondii HOM05D002156 ORTHO05D002328 1.4e-25 120.2 114 53.5
TAR623G0551 Trochodendron aralioides HOM05D002156 ORTHO05D002328 1.9e-25 119.8 115 53.9
RcHm_v2.0_Chr3g0496221 Rosa chinensis HOM05D002156 ORTHO05D002328 2.4e-25 119.4 144 47.2
Atru.chr2.1496 Acer truncatum HOM05D002156 ORTHO05D002328 4.2e-25 118.6 119 52.1
FAN23G2882 Fragaria x ananassa HOM05D002156 ORTHO05D002328 4.2e-25 118.6 142 45.8
FvH4_1g28540 Fragaria vesca HOM05D002156 ORTHO05D002328 5.4e-25 118.2 142 45.1
Haze_20432 Corylus avellana HOM05D002156 ORTHO05D002328 7.1e-25 117.9 117 51.3
COL.COLO4_28629 Corchorus olitorius HOM05D002156 ORTHO05D002328 9.3e-25 117.5 113 54.0
FAN19G2483 Fragaria x ananassa HOM05D002156 ORTHO05D002328 9.3e-25 117.5 142 45.1
Potri.013G064800 Populus trichocarpa HOM05D002156 ORTHO05D002328 9.3e-25 117.5 114 50.9
TWI34G0345 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 9.3e-25 117.5 140 48.6
Gohir.A11G230100 Gossypium hirsutum HOM05D002156 ORTHO05D002328 1.2e-24 117.1 114 51.8
Sc07g0007830 Simmondsia chinensis HOM05D002156 ORTHO05D002328 2.1e-24 116.3 114 51.8
DCAR_020655 Daucus carota HOM05D002156 ORTHO05D002328 2.7e-24 115.9 118 49.2
arahy.Tifrunner.gnm1.ann1.7VP81J Arachis hypogaea HOM05D002156 ORTHO05D002328 3.5e-24 115.5 111 46.8
arahy.Tifrunner.gnm1.ann1.M0VUV2 Arachis hypogaea HOM05D002156 ORTHO05D002328 3.5e-24 115.5 111 46.8
Lalb_Chr14g0364791 Lupinus albus HOM05D002156 ORTHO05D002328 3.5e-24 115.5 112 49.1
HanXRQChr11g0348131 Helianthus annuus HOM05D002156 ORTHO05D002328 7.8e-24 114.4 140 45.7
Sabra13G0056700 Salix brachista HOM05D002156 ORTHO05D002328 7.8e-24 114.4 114 50.0
Gorai.013G195700 Gossypium raimondii HOM05D002156 ORTHO05D002328 1.0e-23 114.0 114 48.2
Ca_08306_v3 Cicer arietinum L. HOM05D002156 ORTHO05D002328 1.7e-23 113.2 112 50.0
Gohir.A13G163900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 2.3e-23 112.8 114 48.2
Potri.019G039300 Populus trichocarpa HOM05D002156 ORTHO05D002328 3.0e-23 112.5 114 50.0
Gohir.D13G166800 Gossypium hirsutum HOM05D002156 ORTHO05D002328 3.9e-23 112.1 114 48.2
Aqoxy1G00521 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 8.7e-23 110.9 116 51.7
ECA248G3031 Erigeron canadensis HOM05D002156 ORTHO05D002328 8.7e-23 110.9 111 52.3
Manes.08G153900 Manihot esculenta HOM05D002156 ORTHO05D002328 8.7e-23 110.9 122 48.4
Lj1g0011130 Lotus japonicus HOM05D002156 ORTHO05D002328 1.1e-22 110.5 112 47.3
PGR042G0405 Punica granatum HOM05D002156 ORTHO05D002328 1.5e-22 110.2 112 48.2
THA.LOC104800404 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 3.3e-22 109.0 109 48.6
Cc06_g17240 Coffea canephora HOM05D002156 ORTHO05D002328 4.3e-22 108.6 118 50.0
THA.LOC104800077 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 4.3e-22 108.6 109 47.7
Lsat_1_v5_gn_2_103620 Lactuca sativa HOM05D002156 ORTHO05D002328 5.6e-22 108.2 140 44.3
QL07p017931 Quercus lobata HOM05D002156 ORTHO05D002328 7.3e-22 107.8 117 48.7
Eucgr.A02134 Eucalyptus grandis HOM05D002156 ORTHO05D002328 1.3e-21 107.1 114 48.2
VMungo1383G3546 Vigna mungo HOM05D002156 ORTHO05D002328 1.6e-21 106.7 118 47.5
Medtr7g086460 Medicago truncatula HOM05D002156 ORTHO05D002328 2.8e-21 105.9 118 45.8
THA.LOC104821409 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 2.8e-21 105.9 109 47.7
Glyma.19G116100 Glycine max HOM05D002156 ORTHO05D002328 3.6e-21 105.5 118 46.6
EL10Ac5g11718 Beta vulgaris HOM05D002156 ORTHO05D002328 4.8e-21 105.1 114 45.6
Lsat_1_v5_gn_1_55260 Lactuca sativa HOM05D002156 ORTHO05D002328 4.8e-21 105.1 144 41.0
Aqoxy2G00573 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 6.2e-21 104.8 116 44.0
PSO384G2429 Papaver somniferum HOM05D002156 ORTHO05D002328 8.1e-21 104.4 115 45.2
Psat3g087320 Pisum sativum HOM05D002156 ORTHO05D002328 1.4e-20 103.6 119 45.4
Nn2g14545 Nelumbo nucifera HOM05D002156 ORTHO05D002328 1.8e-20 103.2 115 48.7
Glyma.16G037000 Glycine max HOM05D002156 ORTHO05D002328 2.4e-20 102.8 112 45.5
HanXRQChr07g0197191 Helianthus annuus HOM05D002156 ORTHO05D002328 2.4e-20 102.8 117 46.2
Oeu032944.1 Olea europaea HOM05D002156 ORTHO05D002328 5.3e-20 101.7 112 50.0
AUR62038448 Chenopodium quinoa HOM05D002156 ORTHO05D002328 9.0e-20 100.9 115 46.1
Nitab4.5_0001720g0020 Nicotiana tabacum HOM05D002156 ORTHO05D002328 9.0e-20 100.9 144 44.4
CsaV3_4G011990 Cucumis sativus L. HOM05D002156 ORTHO05D002328 1.2e-19 100.5 117 48.7
ClCG04G004550 Citrullus lanatus HOM05D002156 ORTHO05D002328 2.0e-19 99.8 114 48.2
Sed0023631 Sechium edule HOM05D002156 ORTHO05D002328 2.0e-19 99.8 115 45.2
AUR62036257 Chenopodium quinoa HOM05D002156 ORTHO05D002328 2.6e-19 99.4 115 45.2
Nitab4.5_0000098g0160 Nicotiana tabacum HOM05D002156 ORTHO05D002328 2.6e-19 99.4 139 43.9
SalBow1G7226 Salvia bowleyana HOM05D002156 ORTHO05D002328 5.8e-19 98.2 111 45.0
MELO3C008849.2 Cucumis melo HOM05D002156 ORTHO05D002328 7.6e-19 97.8 115 47.8
Peaxi162Scf01344g00018 Petunia axillaris HOM05D002156 ORTHO05D002328 7.6e-19 97.8 122 46.7
Sed0005796 Sechium edule HOM05D002156 ORTHO05D002328 7.6e-19 97.8 115 47.0
Oeu056497.3 Olea europaea HOM05D002156 ORTHO05D002328 9.9e-19 97.4 111 48.6
Sopen01g021430 Solanum pennellii HOM05D002156 ORTHO05D002328 9.9e-19 97.4 117 47.0
Solyc01g057090.4 Solanum lycopersicum HOM05D002156 ORTHO05D002328 1.3e-18 97.1 117 47.0
Phvul.001G115500 Phaseolus vulgaris HOM05D002156 ORTHO05D002328 1.7e-18 96.7 140 42.1
arahy.Tifrunner.gnm1.ann1.A9N3QV Arachis hypogaea HOM05D002156 ORTHO05D002328 4.9e-18 95.1 113 40.7
MSTRG.10750 Avicennia marina HOM05D002156 ORTHO05D002328 4.9e-18 95.1 93 47.3
ECA232G4690 Erigeron canadensis HOM05D000927 ORTHO05D029280 1.1e-17 94.0 114 42.1
PGSC0003DMG400013066 Solanum tuberosum HOM05D002156 ORTHO05D002328 1.1e-17 94.0 117 45.3
SGA_v2.0_scaffold17G07976 Striga asiatica HOM05D002156 ORTHO05D002328 1.1e-17 94.0 111 43.2
CDE05G3656 Ceratophyllum demersum HOM05D002156 ORTHO05D002328 1.9e-17 93.2 113 42.5
Hund22589 Selenicereus undatus HOM05D002156 ORTHO05D002328 1.9e-17 93.2 112 45.5
arahy.Tifrunner.gnm1.ann1.ZF4CS3 Arachis hypogaea HOM05D002156 ORTHO05D002328 2.4e-17 92.8 114 39.5
Migut.K00223 Erythranthe guttata HOM05D002156 ORTHO05D002328 4.2e-17 92.0 93 47.3
unitig_0.g2673 Utricularia gibba HOM05D002156 ORTHO05D002328 7.1e-17 91.3 127 42.5
HanXRQChr01g0026721 Helianthus annuus HOM05D002156 ORTHO05D029280 1.2e-16 90.5 138 39.9
CAN.G752.1 Capsicum annuum HOM05D002156 ORTHO05D002328 2.1e-16 89.7 122 44.3
ATR0618G027 Amborella trichopoda HOM05D002156 ORTHO05D002328 3.5e-16 89.0 141 39.7
arahy.Tifrunner.gnm1.ann1.4I7PBY Arachis hypogaea HOM05D002156 ORTHO05D002328 4.6e-16 88.6 124 37.9
Aa31LG2G1840 Aethionema arabicum HOM05D002156 ORTHO05D002328 6.0e-16 88.2 111 42.3
arahy.Tifrunner.gnm1.ann1.0R4MPN Arachis hypogaea HOM05D002156 ORTHO05D002328 1.3e-15 87.0 124 37.9
ECA232G3899 Erigeron canadensis HOM05D002156 ORTHO05D029280 2.3e-15 86.3 114 38.6
Thhalv10018456m.g Eutrema salsugineum HOM05D002156 ORTHO05D002328 3.0e-15 85.9 93 47.3
Os03g0654500 Oryza sativa ssp. japonica HOM05D002156 ORTHO05D002328 5.1e-15 85.1 116 37.9
BcaB03g15489 Brassica carinata HOM05D002156 ORTHO05D002328 1.5e-14 83.6 93 44.1
TPR.G17860 Trifolium pratense HOM05D002156 ORTHO05D002328 1.9e-14 83.2 97 45.4
HanXRQChr01g0026731 Helianthus annuus HOM05D002156 ORTHO05D029280 7.3e-14 81.3 122 37.7
Zm00001eb052850 Zea mays HOM05D002156 ORTHO05D002328 1.3e-13 80.5 116 37.1
C06p36730 Brassica napus HOM05D002156 ORTHO05D002328 2.1e-13 79.7 89 41.6
BolC6t38783H Brassica oleracea HOM05D002156 ORTHO05D002328 2.1e-13 79.7 89 41.6
Atru.chr8.2310 Acer truncatum HOM05D002156 ORTHO05D002328 4.8e-13 78.6 100 45.0
BcaC08g45876 Brassica carinata HOM05D002156 ORTHO05D002328 4.8e-13 78.6 89 42.7
HPP92_012146 Vanilla planifolia HOM05D002156 ORTHO05D002328 6.2e-13 78.2 117 37.6
Sp5g24790 Schrenkiella parvula HOM05D002156 ORTHO05D002328 1.8e-12 76.6 83 43.4
BraA07t30779Z Brassica rapa HOM05D002156 ORTHO05D002328 5.3e-12 75.1 89 40.4
A07p31440 Brassica napus HOM05D002156 ORTHO05D002328 9.0e-12 74.3 83 42.2
AL1G42570 Arabidopsis lyrata HOM05D002156 ORTHO05D002328 4.5e-11 72.0 81 45.7
CARHR028160 Cardamine hirsuta HOM05D002156 ORTHO05D002328 7.6e-11 71.2 82 42.7
Carub.0001s2716 Capsella rubella HOM05D002156 ORTHO05D002328 1.3e-10 70.5 81 45.7
AT1G28760 Arabidopsis thaliana HOM05D002156 ORTHO05D002328 2.4e-09 66.2 80 43.8
Dinv25407 Davidia involucrata HOM05D002156 ORTHO05D002328 2.4e-09 66.2 46 58.7
SEGI_22161 Sequoiadendron giganteum HOM05D002156 ORTHO05D002328 5.6e-06 55.1 112 31.2


User provided reference genes

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