Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020188 Camellia sinensis var. sinensis HOM05D007321 ORTHO05D009244 5.5e-248 860.5 439 100.0
Dinv19324 Davidia involucrata HOM05D007321 ORTHO05D009244 5.4e-187 657.9 466 73.4
Actinidia28071 Actinidia chinensis HOM05D007321 ORTHO05D009244 9.0e-182 640.6 468 71.8
Rhsim05G0110900 Rhododendron simsii HOM05D007321 ORTHO05D009244 4.4e-181 638.3 484 69.6
Lj5P243T60 Lonicera japonica HOM05D007321 ORTHO05D009244 6.0e-178 627.9 458 73.1
Nitab4.5_0007385g0020 Nicotiana tabacum HOM05D007321 ORTHO05D009244 1.8e-169 599.7 479 64.7
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 5.6e-168 594.7 465 67.1
PGSC0003DMG400003660 Solanum tuberosum HOM05D007321 ORTHO05D009244 7.4e-168 594.3 478 65.1
Nitab4.5_0002105g0030 Nicotiana tabacum HOM05D007321 ORTHO05D009244 4.5e-165 585.1 481 63.6
Oeu037200.1 Olea europaea HOM05D007321 ORTHO05D009244 5.8e-165 584.7 480 65.2
Thecc.02G143600 Theobroma cacao HOM05D007321 ORTHO05D009244 5.8e-165 584.7 478 65.3
MSTRG.16564 Avicennia marina HOM05D007321 ORTHO05D009244 9.9e-165 583.9 484 64.7
Solyc02g083410.4 Solanum lycopersicum HOM05D007321 ORTHO05D009244 1.7e-164 583.2 473 64.1
Sopen02g028190 Solanum pennellii HOM05D007321 ORTHO05D009244 2.2e-164 582.8 476 63.9
Gorai.012G140200 Gossypium raimondii HOM05D007321 ORTHO05D009244 4.9e-164 581.6 476 64.5
Gohir.A04G112300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 6.4e-164 581.3 478 64.0
Eucgr.I02693 Eucalyptus grandis HOM05D007321 ORTHO05D009244 8.4e-164 580.9 478 65.9
GSVIVG01029706001 Vitis vinifera HOM05D007321 ORTHO05D009244 1.4e-163 580.1 455 65.7
Gohir.D04G153300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 1.9e-163 579.7 476 64.3
Cfa005577 Carpinus fangiana HOM05D007321 ORTHO05D009244 2.5e-163 579.3 458 64.8
Lsat_1_v5_gn_7_80180 Lactuca sativa HOM05D007321 ORTHO05D009244 2.5e-163 579.3 460 67.0
Duzib052G0820 Durio zibethinus HOM05D007321 ORTHO05D009244 5.5e-163 578.2 479 64.5
Manes.16G135300 Manihot esculenta HOM05D007321 ORTHO05D009244 7.1e-163 577.8 488 62.9
CiPaw.05G039000 Carya illinoinensis HOM05D007321 ORTHO05D009244 1.2e-162 577.0 476 65.1
ECA236G2671 Erigeron canadensis HOM05D007321 ORTHO05D009244 4.6e-162 575.1 461 63.6
Glyma.05G120300 Glycine max HOM05D007321 ORTHO05D009244 7.9e-162 574.3 475 63.6
Nn1g05198 Nelumbo nucifera HOM05D007321 ORTHO05D009244 7.9e-162 574.3 450 67.6
Migut.B00640 Erythranthe guttata HOM05D007321 ORTHO05D009244 2.3e-161 572.8 484 62.6
HanXRQChr11g0337111 Helianthus annuus HOM05D007321 ORTHO05D009244 3.9e-161 572.0 452 64.8
Sabra16G0223900 Salix brachista HOM05D007321 ORTHO05D009244 1.1e-160 570.5 483 63.6
Phvul.002G206500 Phaseolus vulgaris HOM05D007321 ORTHO05D009244 1.9e-160 569.7 469 64.0
Peaxi162Scf00328g00127 Petunia axillaris HOM05D007321 ORTHO05D009244 3.3e-160 568.9 481 63.0
DCAR_021840 Daucus carota HOM05D000446 ORTHO05D000321 4.3e-160 568.5 455 65.7
Potri.001G344800 Populus trichocarpa HOM05D007321 ORTHO05D009244 9.6e-160 567.4 470 63.8
BcaC05g29686 Brassica carinata HOM05D007321 ORTHO05D009244 2.8e-159 565.8 477 64.6
Lj4g0025169 Lotus japonicus HOM05D007321 ORTHO05D009244 8.2e-159 564.3 469 62.5
Cc02_g21870 Coffea canephora HOM05D007321 ORTHO05D009244 2.4e-158 562.8 493 61.3
VMungo0251G3312 Vigna mungo HOM05D007321 ORTHO05D009244 5.3e-158 561.6 470 63.4
CANSAT80G1420 Cannabis sativa HOM05D007321 ORTHO05D009244 9.0e-158 560.8 435 67.6
FAN25G3421 Fragaria x ananassa HOM05D007321 ORTHO05D009244 3.4e-157 558.9 479 62.8
QL11p019400 Quercus lobata HOM05D007321 ORTHO05D009244 3.4e-157 558.9 486 61.9
PGR142G0984 Punica granatum HOM05D007321 ORTHO05D009244 1.3e-156 557.0 480 62.1
CARHR083990 Cardamine hirsuta HOM05D007321 ORTHO05D009244 2.2e-156 556.2 479 62.4
Medtr4g094295 Medicago truncatula HOM05D007321 ORTHO05D009244 2.9e-156 555.8 469 61.2
Psat1g188000 Pisum sativum HOM05D007321 ORTHO05D009244 4.9e-156 555.1 472 62.3
RcHm_v2.0_Chr5g0072531 Rosa chinensis HOM05D007321 ORTHO05D009244 1.1e-155 553.9 479 62.0
FvH4_3g40270 Fragaria vesca HOM05D007321 ORTHO05D009244 1.9e-155 553.1 478 61.1
ClCG10G015890 Citrullus lanatus HOM05D007321 ORTHO05D009244 2.5e-155 552.7 433 65.6
Sp3g07930 Schrenkiella parvula HOM05D007321 ORTHO05D009244 3.2e-155 552.4 478 61.5
Aqoxy6G00494 Aquilegia oxysepala HOM05D007321 ORTHO05D009244 4.2e-155 552.0 480 62.1
MD03G1054600 Malus domestica HOM05D007321 ORTHO05D009244 4.2e-155 552.0 453 64.9
MELO3C009790.2 Cucumis melo HOM05D007321 ORTHO05D009244 5.5e-155 551.6 470 63.0
SalBow5G3411 Salvia bowleyana HOM05D007321 ORTHO05D009244 5.5e-155 551.6 475 62.9
TWI59G1034 Tripterygium wilfordii HOM05D007321 ORTHO05D009244 5.5e-155 551.6 476 62.2
Carub.0003s0867 Capsella rubella HOM05D007321 ORTHO05D009244 7.1e-155 551.2 478 62.3
A05p39470 Brassica napus HOM05D007321 ORTHO05D009244 9.3e-155 550.8 477 63.1
BolC5t34500H Brassica oleracea HOM05D007321 ORTHO05D009244 9.3e-155 550.8 477 62.9
FAN21G2259 Fragaria x ananassa HOM05D007321 ORTHO05D009244 1.2e-154 550.4 479 61.8
Atru.chr6.902 Acer truncatum HOM05D007321 ORTHO05D009244 1.6e-154 550.1 481 61.5
FAN11G3563 Fragaria x ananassa HOM05D007321 ORTHO05D009244 1.6e-154 550.1 450 63.3
FAN16G2899 Fragaria x ananassa HOM05D007321 ORTHO05D009244 1.6e-154 550.1 450 63.3
BraA05t22728Z Brassica rapa HOM05D007321 ORTHO05D009244 2.1e-154 549.7 477 62.3
C05p58490 Brassica napus HOM05D007321 ORTHO05D009244 2.7e-154 549.3 477 62.7
AT3G09580 Arabidopsis thaliana HOM05D007321 ORTHO05D009244 4.6e-154 548.5 478 61.5
THA.LOC104826997 Tarenaya hassleriana HOM05D007321 ORTHO05D009244 3.0e-153 545.8 482 62.2
AL3G20750 Arabidopsis lyrata HOM05D007321 ORTHO05D009244 5.1e-153 545.0 457 62.6
Ciclev10004047m.g Citrus clementina HOM05D007321 ORTHO05D009244 6.7e-153 544.7 444 63.7
Sed0000618 Sechium edule HOM05D007321 ORTHO05D009244 2.5e-152 542.7 463 61.8
CsaV3_3G040590 Cucumis sativus L. HOM05D007321 ORTHO05D009244 5.7e-152 541.6 429 64.6
SGA_v2.0_scaffold332G48942 Striga asiatica HOM05D007321 ORTHO05D009244 7.4e-152 541.2 483 61.1
Prupe.6G043200 Prunus persica HOM05D007321 ORTHO05D009244 1.8e-150 536.6 487 61.0
Lalb_Chr07g0189441 Lupinus albus HOM05D007321 ORTHO05D009244 1.5e-149 533.5 475 59.8
Ah.14g085390 Amaranthus hybridus HOM05D007321 ORTHO05D009244 4.2e-147 525.4 481 59.7
Aa31LG3G2030 Aethionema arabicum HOM05D007321 ORTHO05D009244 7.2e-147 524.6 497 57.7
Sc14g0002750 Simmondsia chinensis HOM05D007321 ORTHO05D009244 2.1e-146 523.1 428 63.1
Thhalv10003042m.g Eutrema salsugineum HOM05D007321 ORTHO05D009244 1.0e-145 520.8 481 59.3
EL10Ac8g19338 Beta vulgaris HOM05D007321 ORTHO05D009244 2.5e-144 516.2 430 63.0
PSO541G5651 Papaver somniferum HOM05D007321 ORTHO05D009244 1.7e-143 513.5 485 58.8
MBI05_g36588_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 1.1e-142 510.8 470 58.9
PSO675G7953 Papaver somniferum HOM05D007321 ORTHO05D009244 8.5e-140 501.1 465 58.3
AUR62027387 Chenopodium quinoa HOM05D007321 ORTHO05D009244 4.7e-138 495.4 402 64.2
SEGI_02418 Sequoiadendron giganteum HOM05D007321 ORTHO05D009244 1.4e-134 483.8 425 58.6
ATR0580G200 Amborella trichopoda HOM05D007321 ORTHO05D009244 2.3e-129 466.5 428 57.5
CDE06G0306 Ceratophyllum demersum HOM05D007321 ORTHO05D009244 2.0e-125 453.4 451 54.1
Mapoly0005s0009 Marchantia polymorpha HOM05D007321 ORTHO05D009244 1.5e-123 447.2 431 55.9
Pp3c2_19910 Physcomitrium patens HOM05D007321 ORTHO05D009244 4.2e-123 445.7 426 54.9
Ca_18334_v3 Cicer arietinum L. HOM05D005078 ORTHO05D007574 2.2e-116 423.3 372 60.2
SMO116G0156 Selaginella moellendorffii HOM05D007321 ORTHO05D009244 6.1e-114 415.2 425 52.5
Zm00001eb328010 Zea mays HOM05D007321 ORTHO05D009244 1.4e-113 414.1 425 54.6
TPR.G10452 Trifolium pratense HOM05D007321 ORTHO05D009244 5.2e-113 412.1 367 57.5
AagrBONN_evm.TU.Sc2ySwM_344.1849 Anthoceros agrestis HOM05D007321 ORTHO05D009244 6.6e-108 395.2 428 47.9
Os07g0626800 Oryza sativa ssp. japonica HOM05D007321 ORTHO05D009244 1.8e-102 377.1 400 53.2
TAR381G1665 Trochodendron aralioides HOM05D007321 ORTHO05D009244 9.2e-102 374.8 311 66.9
Cre12.g560900 Chlamydomonas reinhardtii HOM05D007321 ORTHO05D009244 5.0e-100 369.0 418 48.3
CAN.G890.33 Capsicum annuum HOM05D007321 ORTHO05D009244 2.8e-98 363.2 458 46.9
CBR_g49724 Chara braunii HOM05D007321 ORTHO05D009244 1.8e-89 334.0 451 43.0
MCO04G135 Micromonas commoda HOM05D007321 ORTHO05D009244 7.1e-86 322.0 456 41.4
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 3.3e-83 313.2 417 42.4
Cpa.g.sc52.12 Carica papaya HOM05D007321 ORTHO05D009244 4.0e-81 306.2 263 62.7
unitig_8.g3471 Utricularia gibba HOM05D007321 ORTHO05D009244 1.3e-71 274.6 192 71.4
MBI05_g44827_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 1.4e-70 271.2 327 48.9
AagrBONN_evm.TU.Sc2ySwM_344.1850 Anthoceros agrestis HOM05D007321 ORTHO05D009244 1.7e-60 237.7 220 54.1
AUR62031301 Chenopodium quinoa HOM05D007321 ORTHO05D009244 1.3e-50 204.9 142 71.1
unitig_8.g3470 Utricularia gibba HOM05D007321 ORTHO05D009244 1.0e-47 195.3 148 61.5
MBI05_g44826_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 8.2e-34 149.1 117 62.4
HPP92_016846 Vanilla planifolia HOM05D007321 ORTHO05D009244 3.3e-27 127.1 128 55.5
TAR381G1585 Trochodendron aralioides HOM05D007321 ORTHO05D009244 3.0e-20 104.0 72 69.4
Nn3g16518 Nelumbo nucifera HOM05D007163 ORTHO05D009213 1.2e-08 65.5 175 28.6
Nn3g19797 Nelumbo nucifera HOM05D007321 ORTHO05D009244 1.6e-08 65.1 54 63.0
Ah.15g094770 Amaranthus hybridus HOM05D002360 ORTHO05D006971 2.9e-07 60.8 442 21.5
A07p24430 Brassica napus HOM05D000461 ORTHO05D001840 2.9e-07 60.8 148 29.1
BraA07t30090Z Brassica rapa HOM05D000461 ORTHO05D001840 2.9e-07 60.8 148 29.1
BraA10t44490Z Brassica rapa HOM05D007163 ORTHO05D009213 2.9e-07 60.8 175 25.1
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 6.5e-07 59.7 272 23.9
BcaB08g36967 Brassica carinata HOM05D007163 ORTHO05D009213 6.5e-07 59.7 176 27.8
TAR374G1101 Trochodendron aralioides HOM05D007163 ORTHO05D009213 6.5e-07 59.7 184 28.8
AT5G14220 Arabidopsis thaliana HOM05D007163 ORTHO05D009213 8.5e-07 59.3 165 29.1
C09p62940 Brassica napus HOM05D007163 ORTHO05D009213 1.1e-06 58.9 172 26.2
BolC9t59131H Brassica oleracea HOM05D007163 ORTHO05D009213 1.1e-06 58.9 172 26.2
Ca_08364_v3 Cicer arietinum L. HOM05D007163 ORTHO05D009213 1.1e-06 58.9 172 30.2
Pp3c1_4180 Physcomitrium patens HOM05D007163 ORTHO05D009213 1.1e-06 58.9 238 28.6
BcaC04g19052 Brassica carinata HOM05D007163 ORTHO05D009213 1.5e-06 58.5 172 26.2
Lj1C523T2 Lonicera japonica HOM05D000461 ORTHO05D001840 1.5e-06 58.5 273 24.2
A10p24250 Brassica napus HOM05D007163 ORTHO05D009213 1.9e-06 58.2 172 25.6
Eucgr.J01648 Eucalyptus grandis HOM05D000461 ORTHO05D001840 1.9e-06 58.2 164 27.4
Lj1A522T61 Lonicera japonica HOM05D000461 ORTHO05D001840 3.2e-06 57.4 247 25.5
PSO541G2331 Papaver somniferum HOM05D000461 ORTHO05D001840 3.2e-06 57.4 157 29.3
Sed0015727 Sechium edule HOM05D007163 ORTHO05D009213 3.2e-06 57.4 183 27.9
GSVIVG01020812001 Vitis vinifera HOM05D000461 ORTHO05D001840 3.2e-06 57.4 146 30.1
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 5.5e-06 56.6 271 24.4
BolC6t37748H Brassica oleracea HOM05D000461 ORTHO05D001840 5.5e-06 56.6 271 24.4
Cpa.g.sc50.126 Carica papaya HOM05D000461 ORTHO05D001840 5.5e-06 56.6 141 30.5
Ciclev10014964m.g Citrus clementina HOM05D007163 ORTHO05D009213 5.5e-06 56.6 171 25.7
Glyma.02G282000 Glycine max HOM05D000461 ORTHO05D001840 5.5e-06 56.6 268 24.3
Manes.02G090500 Manihot esculenta HOM05D000461 ORTHO05D001840 5.5e-06 56.6 266 24.4
Psat5g194080 Pisum sativum HOM05D000461 ORTHO05D001840 5.5e-06 56.6 146 25.3
Sp5g03930 Schrenkiella parvula HOM05D000461 ORTHO05D001840 5.5e-06 56.6 140 27.1
TPR.G38344 Trifolium pratense HOM05D007163 ORTHO05D009213 5.5e-06 56.6 174 29.9
AUR62001382 Chenopodium quinoa HOM05D002360 ORTHO05D006971 7.2e-06 56.2 449 20.7
Medtr7g031310 Medicago truncatula HOM05D007163 ORTHO05D009213 7.2e-06 56.2 193 28.0
Sp6g29810 Schrenkiella parvula HOM05D007163 ORTHO05D009213 7.2e-06 56.2 172 25.0
Atru.chr6.2010 Acer truncatum HOM05D000461 ORTHO05D001840 9.4e-06 55.8 255 23.5
CARHR199120 Cardamine hirsuta HOM05D007163 ORTHO05D009213 9.4e-06 55.8 172 25.6
Lalb_Chr14g0363061 Lupinus albus HOM05D007163 ORTHO05D009213 9.4e-06 55.8 185 27.6
MCO15G399 Micromonas commoda HOM05D002360 ORTHO05D006971 9.4e-06 55.8 174 30.5
PSO063G0972 Papaver somniferum HOM05D007163 ORTHO05D009213 9.4e-06 55.8 172 28.5
PSO675G0781 Papaver somniferum HOM05D000461 ORTHO05D001840 9.4e-06 55.8 137 29.2
PRCOL_00001572 Prasinoderma coloniale HOM05D002360 ORTHO05D006971 9.4e-06 55.8 176 29.0
QL02p071962 Quercus lobata HOM05D007163 ORTHO05D009213 9.4e-06 55.8 171 26.3
Zm00001eb070310 Zea mays HOM05D000461 ORTHO05D001840 9.4e-06 55.8 261 24.1


User provided reference genes

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