Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020186 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 4.0e-75 284.6 141 100.0
CSS0044643 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 2.9e-73 278.5 141 97.9
CSS0012854 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.6e-55 219.5 141 80.9
CSS0005611 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 6.4e-49 197.6 136 75.7
CSS0035788 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.7e-41 172.9 150 65.3
CSS0025796 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 3.0e-38 162.2 136 64.7
CSS0014542 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.4e-32 143.3 136 62.5
CSS0009838 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 5.0e-25 118.2 116 59.5
RhsimUnG0020700 Rhododendron simsii HOM05D003429 ORTHO05D003873 1.1e-19 100.5 117 49.6
vmacro07588 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 1.4e-19 100.1 117 48.7
Actinidia13982 Actinidia chinensis HOM05D003429 ORTHO05D003873 2.4e-19 99.4 117 47.9
Actinidia14028 Actinidia chinensis HOM05D003429 ORTHO05D003873 2.4e-19 99.4 117 47.9
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 2.4e-19 99.4 117 47.9
Actinidia37867 Actinidia chinensis HOM05D003429 ORTHO05D003873 2.4e-19 99.4 117 47.9
Nn7g37083 Nelumbo nucifera HOM05D003429 ORTHO05D003873 4.4e-13 78.6 100 47.0
Cpa.g.sc33.148 Carica papaya HOM05D003429 ORTHO05D003873 7.4e-13 77.8 111 46.8
Solyc01g056520.3 Solanum lycopersicum HOM05D003429 ORTHO05D003873 7.4e-13 77.8 135 43.0
Sopen01g020360 Solanum pennellii HOM05D003429 ORTHO05D003873 7.4e-13 77.8 135 43.0
Peaxi162Scf00139g01028 Petunia axillaris HOM05D003429 ORTHO05D003873 9.7e-13 77.4 111 46.8
MD02G1207800 Malus domestica HOM05D003429 ORTHO05D003873 2.2e-12 76.3 141 39.0
Nitab4.5_0002094g0090 Nicotiana tabacum HOM05D003429 ORTHO05D003873 2.2e-12 76.3 111 45.9
PGR031G2936 Punica granatum HOM05D003429 ORTHO05D003873 2.2e-12 76.3 111 45.0
Prupe.2G050900 Prunus persica HOM05D003429 ORTHO05D003873 3.7e-12 75.5 112 44.6
Prupe.2G051400 Prunus persica HOM05D003429 ORTHO05D003873 3.7e-12 75.5 112 44.6
AL6G16070 Arabidopsis lyrata HOM05D003429 ORTHO05D003873 4.8e-12 75.1 112 43.8
Nitab4.5_0000211g0060 Nicotiana tabacum HOM05D003429 ORTHO05D003873 4.8e-12 75.1 111 45.9
GSVIVG01012453001 Vitis vinifera HOM05D003429 ORTHO05D003873 4.8e-12 75.1 100 48.0
Atru.chr12.1194 Acer truncatum HOM05D003429 ORTHO05D003873 6.3e-12 74.7 111 45.0
Aqoxy1G01517 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 6.3e-12 74.7 100 46.0
BcaB05g21683 Brassica carinata HOM05D003429 ORTHO05D003873 6.3e-12 74.7 112 42.9
C02p02580 Brassica napus HOM05D003429 ORTHO05D003873 6.3e-12 74.7 112 42.9
BolC2t06224H Brassica oleracea HOM05D003429 ORTHO05D003873 6.3e-12 74.7 112 42.9
Aqoxy5G00851 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 8.2e-12 74.3 100 46.0
Carub.0006s0499 Capsella rubella HOM05D003429 ORTHO05D003873 8.2e-12 74.3 112 42.9
Cfa010982 Carpinus fangiana HOM05D003429 ORTHO05D003873 8.2e-12 74.3 111 44.1
Thhalv10012516m.g Eutrema salsugineum HOM05D003429 ORTHO05D003873 8.2e-12 74.3 112 43.8
CiPaw.13G018300 Carya illinoinensis HOM05D003429 ORTHO05D003873 1.1e-11 73.9 111 43.2
Potri.003G189500 Populus trichocarpa HOM05D003429 ORTHO05D003873 1.1e-11 73.9 111 45.0
AT5G06120 Arabidopsis thaliana HOM05D003429 ORTHO05D003873 1.4e-11 73.6 112 42.9
arahy.Tifrunner.gnm1.ann1.3RNG04 Arachis hypogaea HOM05D003429 ORTHO05D003873 1.4e-11 73.6 111 44.1
arahy.Tifrunner.gnm1.ann1.P7SNS1 Arachis hypogaea HOM05D003429 ORTHO05D003873 1.4e-11 73.6 111 44.1
MD07G1118000 Malus domestica HOM05D003429 ORTHO05D003873 1.4e-11 73.6 141 38.3
QL04p022427 Quercus lobata HOM05D003429 ORTHO05D003873 1.4e-11 73.6 118 42.4
Sp6g36790 Schrenkiella parvula HOM05D003429 ORTHO05D003873 1.4e-11 73.6 112 42.0
GSVIVG01025856001 Vitis vinifera HOM05D003429 ORTHO05D003873 1.4e-11 73.6 111 42.3
EL10Ac4g08832 Beta vulgaris HOM05D003429 ORTHO05D003873 1.8e-11 73.2 100 46.0
BraA02t04869Z Brassica rapa HOM05D003429 ORTHO05D003873 1.8e-11 73.2 112 42.0
Glyma.04G003000 Glycine max HOM05D003429 ORTHO05D003873 1.8e-11 73.2 112 44.6
Lj1g0005148 Lotus japonicus HOM05D003429 ORTHO05D003873 1.8e-11 73.2 112 44.6
MBI19_g25231_MAGBIO Magnolia biondii HOM05D003429 ORTHO05D003873 1.8e-11 73.2 100 44.0
Potri.001G036100 Populus trichocarpa HOM05D003429 ORTHO05D003873 1.8e-11 73.2 111 44.1
Sabra01G0025100 Salix brachista HOM05D003429 ORTHO05D003873 1.8e-11 73.2 111 44.1
THA.LOC104816588 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 1.8e-11 73.2 112 42.0
Lj9A653G52 Lonicera japonica HOM05D003429 ORTHO05D003873 2.4e-11 72.8 112 42.9
Dinv03754 Davidia involucrata HOM05D003429 ORTHO05D003873 4.1e-11 72.0 111 42.3
Lalb_Chr11g0061181 Lupinus albus HOM05D003429 ORTHO05D003873 4.1e-11 72.0 111 44.1
THA.LOC104826824 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 4.1e-11 72.0 112 40.2
AUR62035521 Chenopodium quinoa HOM05D003429 ORTHO05D003873 5.3e-11 71.6 111 42.3
AUR62041296 Chenopodium quinoa HOM05D003429 ORTHO05D003873 5.3e-11 71.6 111 42.3
MELO3C011384.2 Cucumis melo HOM05D003429 ORTHO05D003873 5.3e-11 71.6 111 43.2
CsaV3_6G035760 Cucumis sativus L. HOM05D003429 ORTHO05D003873 5.3e-11 71.6 111 43.2
Medtr3g118040 Medicago truncatula HOM05D003429 ORTHO05D003873 5.3e-11 71.6 112 42.9
Psat5g001960 Pisum sativum HOM05D003429 ORTHO05D003873 5.3e-11 71.6 112 42.9
Migut.B01173 Erythranthe guttata HOM05D003429 ORTHO05D003873 7.0e-11 71.2 110 43.6
Glyma.06G003000 Glycine max HOM05D003429 ORTHO05D003873 7.0e-11 71.2 112 43.8
PSO339G2530 Papaver somniferum HOM05D003429 ORTHO05D003873 7.0e-11 71.2 100 43.0
PSO384G1706 Papaver somniferum HOM05D003429 ORTHO05D003873 7.0e-11 71.2 100 43.0
RcHm_v2.0_Chr1g0329811 Rosa chinensis HOM05D003429 ORTHO05D003873 7.0e-11 71.2 141 38.3
Hund06843 Selenicereus undatus HOM05D003429 ORTHO05D003873 7.0e-11 71.2 114 40.4
SalBow5G1634 Salvia bowleyana HOM05D003429 ORTHO05D003873 9.1e-11 70.9 111 42.3
Sc09g0004760 Simmondsia chinensis HOM05D003429 ORTHO05D003873 9.1e-11 70.9 111 43.2
Medtr1g051125 Medicago truncatula HOM05D003429 ORTHO05D003873 1.2e-10 70.5 100 39.0
Oeu013041.2 Olea europaea HOM05D003429 ORTHO05D003873 1.2e-10 70.5 111 40.5
TPR.G13799 Trifolium pratense HOM05D003429 ORTHO05D003873 1.2e-10 70.5 100 40.0
MSTRG.20488 Avicennia marina HOM05D003429 ORTHO05D003873 1.6e-10 70.1 111 42.3
Dinv04984 Davidia involucrata HOM05D003429 ORTHO05D003873 1.6e-10 70.1 111 42.3
ECA248G1206 Erigeron canadensis HOM05D003429 ORTHO05D003873 1.6e-10 70.1 110 42.7
TPR.G38508 Trifolium pratense HOM05D003429 ORTHO05D003873 1.6e-10 70.1 112 42.0
TAR629G1055 Trochodendron aralioides HOM05D003429 ORTHO05D003873 1.6e-10 70.1 111 42.3
BcaC06g32321 Brassica carinata HOM05D003429 ORTHO05D003873 2.0e-10 69.7 112 40.2
A10p30310 Brassica napus HOM05D003429 ORTHO05D003873 2.0e-10 69.7 101 42.6
C09p70720 Brassica napus HOM05D003429 ORTHO05D003873 2.0e-10 69.7 112 40.2
BolC9t59828H Brassica oleracea HOM05D003429 ORTHO05D003873 2.0e-10 69.7 112 40.2
BraA10t45069Z Brassica rapa HOM05D003429 ORTHO05D003873 2.0e-10 69.7 101 42.6
Eucgr.G03181 Eucalyptus grandis HOM05D003429 ORTHO05D003873 2.0e-10 69.7 111 41.4
Os03g0616700 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 2.0e-10 69.7 100 42.0
Phvul.009G118700 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 2.0e-10 69.7 111 41.4
Sed0026988 Sechium edule HOM05D003429 ORTHO05D003873 2.0e-10 69.7 111 43.2
Thecc.10G129100 Theobroma cacao HOM05D003429 ORTHO05D003873 2.6e-10 69.3 111 42.3
unitig_22.g5335 Utricularia gibba HOM05D003429 ORTHO05D003873 2.6e-10 69.3 111 39.6
CANSAT56G3732 Cannabis sativa HOM05D003429 ORTHO05D003873 3.5e-10 68.9 111 42.3
Ca_14865_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 3.5e-10 68.9 100 39.0
Gohir.A10G192300 Gossypium hirsutum HOM05D003429 ORTHO05D003873 3.5e-10 68.9 111 40.5
QL07p014239 Quercus lobata HOM05D003429 ORTHO05D003873 3.5e-10 68.9 100 42.0
VMungo1309G0597 Vigna mungo HOM05D003429 ORTHO05D003873 3.5e-10 68.9 112 42.0
Cc00_g07020 Coffea canephora HOM05D003429 ORTHO05D003873 4.5e-10 68.6 100 44.0
Ciclev10000149m.g Citrus clementina HOM05D003429 ORTHO05D003873 5.9e-10 68.2 111 41.4
Haze_02954 Corylus avellana HOM05D003429 ORTHO05D003873 7.7e-10 67.8 136 38.2
Gohir.D10G200200 Gossypium hirsutum HOM05D003429 ORTHO05D003873 7.7e-10 67.8 111 39.6
Gorai.011G224400 Gossypium raimondii HOM05D003429 ORTHO05D003873 7.7e-10 67.8 111 39.6
Manes.04G153600 Manihot esculenta HOM05D003429 ORTHO05D003873 7.7e-10 67.8 111 40.5
Duzib114G0344 Durio zibethinus HOM05D003429 ORTHO05D003873 1.0e-09 67.4 111 41.4
Lsat_1_v5_gn_1_118001 Lactuca sativa HOM05D003429 ORTHO05D003873 1.0e-09 67.4 99 43.4
TWI63G1019 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 1.0e-09 67.4 111 43.2
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 1.3e-09 67.0 100 37.0
Duzib128G2024 Durio zibethinus HOM05D003429 ORTHO05D003873 1.3e-09 67.0 111 41.4
TWI53G2015 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 1.3e-09 67.0 101 41.6
Aa31LG11G7100 Aethionema arabicum HOM05D003429 ORTHO05D003873 1.7e-09 66.6 73 49.3
VMungo0720G0379 Vigna mungo HOM05D003429 ORTHO05D003873 1.7e-09 66.6 100 40.0
FvH4_7g04530 Fragaria vesca HOM05D003429 ORTHO05D003873 2.9e-09 65.9 111 39.6
FAN03G0932 Fragaria x ananassa HOM05D003429 ORTHO05D003873 2.9e-09 65.9 111 39.6
FAN06G0150 Fragaria x ananassa HOM05D003429 ORTHO05D003873 2.9e-09 65.9 111 39.6
FAN06G3547 Fragaria x ananassa HOM05D003429 ORTHO05D003873 2.9e-09 65.9 111 39.6
FAN10G0722 Fragaria x ananassa HOM05D003429 ORTHO05D003873 2.9e-09 65.9 111 39.6
HanXRQChr16g0510451 Helianthus annuus HOM05D003429 ORTHO05D003873 2.9e-09 65.9 110 40.9
Manes.11G010000 Manihot esculenta HOM05D003429 ORTHO05D003873 2.9e-09 65.9 112 41.1
Zm00001eb278500 Zea mays HOM05D003429 ORTHO05D003873 2.9e-09 65.9 116 36.2
HPP92_028707 Vanilla planifolia HOM05D003429 ORTHO05D003873 3.8e-09 65.5 101 37.6
ATR0782G154 Amborella trichopoda HOM05D003429 ORTHO05D003873 5.0e-09 65.1 100 38.0
FAN01G2134 Fragaria x ananassa HOM05D003429 ORTHO05D003873 5.0e-09 65.1 111 39.6
Sc13g0000830 Simmondsia chinensis HOM05D003429 ORTHO05D003873 5.0e-09 65.1 101 35.6
SGA_v2.0_scaffold164G38141 Striga asiatica HOM05D003429 ORTHO05D003873 1.1e-08 63.9 100 39.0
Glyma.10G104900 Glycine max HOM05D003429 ORTHO05D003873 1.5e-08 63.5 100 38.0
DCAR_013522 Daucus carota HOM05D003429 ORTHO05D003873 1.9e-08 63.2 100 38.0
Hund24514 Selenicereus undatus HOM05D003429 ORTHO05D003873 1.9e-08 63.2 101 37.6
Lalb_Chr02g0156721 Lupinus albus HOM05D003429 ORTHO05D003873 1.2e-07 60.5 100 39.0
SHI11319 Sapria himalayana HOM05D003429 ORTHO05D003873 1.6e-07 60.1 71 47.9
SMO367G0627 Selaginella moellendorffii HOM05D003429 ORTHO05D003873 1.6e-07 60.1 100 32.0
DCAR_022673 Daucus carota HOM05D003429 ORTHO05D003873 1.4e-06 57.0 72 47.2
AUR62018433 Chenopodium quinoa HOM05D003429 ORTHO05D003873 1.8e-06 56.6 100 34.0
CBR_g30950 Chara braunii HOM05D003429 ORTHO05D003873 2.3e-06 56.2 100 33.0
AUR62021000 Chenopodium quinoa HOM05D003429 ORTHO05D003873 5.2e-06 55.1 96 34.4
Pp3c5_25430 Physcomitrium patens HOM05D003429 ORTHO05D003873 5.2e-06 55.1 100 31.0
Pp3c5_25610 Physcomitrium patens HOM05D003429 ORTHO05D003873 6.7e-06 54.7 100 31.0


User provided reference genes

Program Settings