Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020151 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 1.7e-67 259.2 132 100.0
Actinidia40096 Actinidia chinensis HOM05D004338 ORTHO05D005205 5.1e-40 167.9 100 81.0
CSS0020604 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 1.9e-39 166.0 100 82.0
CSS0016797 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 1.6e-38 162.9 99 83.8
CSS0000736 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 4.8e-38 161.4 99 82.8
Actinidia08449 Actinidia chinensis HOM05D004338 ORTHO05D005205 8.2e-38 160.6 100 80.0
CSS0047496 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 1.1e-37 160.2 99 82.8
Atru.chr4.2282 Acer truncatum HOM05D004338 ORTHO05D005205 3.1e-37 158.7 100 78.0
Dinv14075 Davidia involucrata HOM05D004338 ORTHO05D005205 9.0e-37 157.1 100 77.0
PGR142G2602 Punica granatum HOM05D004338 ORTHO05D005205 3.4e-36 155.2 99 76.8
Rhsim04G0194700 Rhododendron simsii HOM05D004338 ORTHO05D005205 7.6e-36 154.1 100 75.0
TAR365G0259 Trochodendron aralioides HOM05D004338 ORTHO05D005205 1.7e-35 152.9 100 74.0
Dinv44613 Davidia involucrata HOM05D004338 ORTHO05D005205 2.2e-35 152.5 98 75.5
CAN.G626.12 Capsicum annuum HOM05D004338 ORTHO05D005205 2.9e-35 152.1 100 74.0
Lj6C654G1 Lonicera japonica HOM05D004338 ORTHO05D005205 3.8e-35 151.8 100 74.0
Nitab4.5_0000525g0110 Nicotiana tabacum HOM05D004338 ORTHO05D005205 3.8e-35 151.8 100 74.0
Nitab4.5_0004203g0030 Nicotiana tabacum HOM05D004338 ORTHO05D005205 3.8e-35 151.8 100 74.0
vmacro08400 Vaccinium macrocarpon HOM05D004338 ORTHO05D005205 3.8e-35 151.8 100 72.0
Sopen09g032180 Solanum pennellii HOM05D004338 ORTHO05D005205 5.0e-35 151.4 100 74.0
TAR636G0266 Trochodendron aralioides HOM05D004338 ORTHO05D005205 5.0e-35 151.4 100 73.0
CiPaw.02G117900 Carya illinoinensis HOM05D004338 ORTHO05D005205 8.5e-35 150.6 100 72.0
Cc00_g20710 Coffea canephora HOM05D004338 ORTHO05D005205 8.5e-35 150.6 100 73.0
Ciclev10004298m.g Citrus clementina HOM05D004338 ORTHO05D005205 1.9e-34 149.4 100 71.0
QL06p015078 Quercus lobata HOM05D004338 ORTHO05D005205 1.9e-34 149.4 100 74.0
CSS0018877 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 2.5e-34 149.1 97 79.4
GSVIVG01018095001 Vitis vinifera HOM05D004338 ORTHO05D005205 2.5e-34 149.1 100 71.0
VMungo0720G2420 Vigna mungo HOM05D004338 ORTHO05D005205 7.2e-34 147.5 101 73.3
Sabra08G0122600 Salix brachista HOM05D004338 ORTHO05D005205 1.2e-33 146.7 98 68.4
Haze_11270 Corylus avellana HOM05D004338 ORTHO05D005205 1.6e-33 146.4 105 68.6
Glyma.20G210700 Glycine max HOM05D004338 ORTHO05D005205 2.1e-33 146.0 101 71.3
Nn1g02554 Nelumbo nucifera HOM05D004338 ORTHO05D005205 2.7e-33 145.6 100 68.0
Peaxi162Scf01416g00020 Petunia axillaris HOM05D004338 ORTHO05D005205 2.7e-33 145.6 100 72.0
Cfa008398 Carpinus fangiana HOM05D004338 ORTHO05D005205 3.6e-33 145.2 100 71.0
Manes.03G170100 Manihot esculenta HOM05D004338 ORTHO05D005205 6.1e-33 144.4 100 73.0
Glyma.10G179700 Glycine max HOM05D004338 ORTHO05D005205 7.9e-33 144.1 101 70.3
Potri.008G160700 Populus trichocarpa HOM05D004338 ORTHO05D005205 1.0e-32 143.7 100 68.0
Phvul.003G138460 Phaseolus vulgaris HOM05D004338 ORTHO05D005205 2.3e-32 142.5 101 70.3
Prupe.1G027100 Prunus persica HOM05D004338 ORTHO05D005205 2.3e-32 142.5 100 72.0
RcHm_v2.0_Chr4g0389551 Rosa chinensis HOM05D004338 ORTHO05D005205 2.3e-32 142.5 100 73.0
RcHm_v2.0_Chr4g0389581 Rosa chinensis HOM05D004338 ORTHO05D005205 3.0e-32 142.1 100 72.0
Sabra10G0064800 Salix brachista HOM05D004338 ORTHO05D005205 5.1e-32 141.4 101 68.3
Thecc.04G243900 Theobroma cacao HOM05D004338 ORTHO05D005205 8.7e-32 140.6 98 71.4
Thhalv10003159m.g Eutrema salsugineum HOM05D004338 ORTHO05D005205 1.1e-31 140.2 99 64.6
BcaB07g30561 Brassica carinata HOM05D004338 ORTHO05D005205 1.9e-31 139.4 100 62.0
Lalb_Chr03g0037911 Lupinus albus HOM05D004338 ORTHO05D005205 1.9e-31 139.4 100 67.0
Potri.010G078600 Populus trichocarpa HOM05D004338 ORTHO05D005205 1.9e-31 139.4 100 68.0
Oeu003600.1 Olea europaea HOM05D004338 ORTHO05D005205 2.5e-31 139.0 100 65.0
A02p27940 Brassica napus HOM05D004338 ORTHO05D005205 3.3e-31 138.7 100 61.0
BraA02t07831Z Brassica rapa HOM05D004338 ORTHO05D005205 3.3e-31 138.7 100 61.0
CANSAT78G1672 Cannabis sativa HOM05D004338 ORTHO05D005205 3.3e-31 138.7 100 68.0
Cpa.g.sc58.22 Carica papaya HOM05D004338 ORTHO05D005205 3.3e-31 138.7 100 66.0
BolC2t10456H Brassica oleracea HOM05D004338 ORTHO05D005205 4.3e-31 138.3 100 61.0
Eucgr.H00218 Eucalyptus grandis HOM05D004338 ORTHO05D005205 4.3e-31 138.3 99 67.7
Sp2g08530 Schrenkiella parvula HOM05D004338 ORTHO05D005205 4.3e-31 138.3 100 64.0
MSTRG.21887 Avicennia marina HOM05D004338 ORTHO05D005205 5.7e-31 137.9 100 65.0
arahy.Tifrunner.gnm1.ann1.5I9I5Q Arachis hypogaea HOM05D004338 ORTHO05D005205 7.4e-31 137.5 101 67.3
arahy.Tifrunner.gnm1.ann1.EA06G0 Arachis hypogaea HOM05D004338 ORTHO05D005205 7.4e-31 137.5 101 67.3
Gohir.D09G056400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 7.4e-31 137.5 98 69.4
Gorai.006G070000 Gossypium raimondii HOM05D004338 ORTHO05D005205 7.4e-31 137.5 98 69.4
RcHm_v2.0_Chr4g0389561 Rosa chinensis HOM05D004338 ORTHO05D005205 9.7e-31 137.1 100 70.0
Aqoxy2G03524 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 1.3e-30 136.7 100 66.0
Gohir.A09G057200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.3e-30 136.7 98 69.4
BcaC03g16592 Brassica carinata HOM05D004338 ORTHO05D005205 1.7e-30 136.3 100 60.0
C02p44140 Brassica napus HOM05D004338 ORTHO05D005205 1.7e-30 136.3 100 60.0
MELO3C006480.2 Cucumis melo HOM05D004338 ORTHO05D005205 1.7e-30 136.3 100 64.0
MD13G1204000 Malus domestica HOM05D004338 ORTHO05D005205 2.2e-30 136.0 100 66.0
ClCG05G004690 Citrullus lanatus HOM05D004338 ORTHO05D005205 2.8e-30 135.6 100 64.0
TWI09G1436 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 2.8e-30 135.6 100 65.0
Lj5g0007630 Lotus japonicus HOM05D004338 ORTHO05D005205 3.7e-30 135.2 101 67.3
CsaV3_3G012690 Cucumis sativus L. HOM05D004338 ORTHO05D005205 6.3e-30 134.4 100 63.0
Migut.G00416 Erythranthe guttata HOM05D004338 ORTHO05D005205 8.2e-30 134.0 99 65.7
Aa31LG5G3510 Aethionema arabicum HOM05D004338 ORTHO05D005205 1.4e-29 133.3 100 63.0
Duzib151G0366 Durio zibethinus HOM05D004338 ORTHO05D005205 1.4e-29 133.3 98 64.3
TWI73G0220 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 1.4e-29 133.3 100 62.0
Lalb_Chr02g0150011 Lupinus albus HOM05D004338 ORTHO05D005205 1.8e-29 132.9 101 67.3
Sed0024916 Sechium edule HOM05D004338 ORTHO05D005205 1.8e-29 132.9 100 65.0
Ca_09879_v3 Cicer arietinum L. HOM05D004338 ORTHO05D005205 2.4e-29 132.5 101 65.3
Psat6g113560 Pisum sativum HOM05D004338 ORTHO05D005205 4.1e-29 131.7 101 63.4
Gohir.D09G224200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 5.3e-29 131.3 98 66.3
Gorai.006G245700 Gossypium raimondii HOM05D004338 ORTHO05D005205 5.3e-29 131.3 98 66.3
MBI04_g06839_MAGBIO Magnolia biondii HOM05D004338 ORTHO05D005205 1.2e-28 130.2 98 65.3
MD16G1206000 Malus domestica HOM05D004338 ORTHO05D005205 1.2e-28 130.2 100 62.0
SGA_v2.0_scaffold101G29777 Striga asiatica HOM05D004338 ORTHO05D005205 1.2e-28 130.2 100 60.0
AL37U10030 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 1.5e-28 129.8 100 57.0
EL10Ac4g09514 Beta vulgaris HOM05D004338 ORTHO05D005205 2.0e-28 129.4 98 59.2
Gohir.A09G222100 Gossypium hirsutum HOM05D004338 ORTHO05D005205 2.0e-28 129.4 98 66.3
Lsat_1_v5_gn_5_67480 Lactuca sativa HOM05D004338 ORTHO05D005205 2.6e-28 129.0 100 63.0
TPR.G14022 Trifolium pratense HOM05D004338 ORTHO05D005205 2.6e-28 129.0 101 62.4
AUR62006783 Chenopodium quinoa HOM05D004338 ORTHO05D005205 3.4e-28 128.6 97 60.8
Gorai.011G170600 Gossypium raimondii HOM05D004338 ORTHO05D005205 4.5e-28 128.3 98 65.3
PSO238G0023 Papaver somniferum HOM05D004338 ORTHO05D005205 4.5e-28 128.3 100 63.0
Carub.0008s0490 Capsella rubella HOM05D004338 ORTHO05D005205 5.9e-28 127.9 100 57.0
DCAR_024200 Daucus carota HOM05D004338 ORTHO05D005205 5.9e-28 127.9 99 64.6
PSO210G3643 Papaver somniferum HOM05D004338 ORTHO05D005205 5.9e-28 127.9 100 63.0
Medtr1g076330 Medicago truncatula HOM05D004338 ORTHO05D005205 7.7e-28 127.5 100 63.0
AT5G43745 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 1.0e-27 127.1 100 56.0
COL.COLO4_15767 Corchorus olitorius HOM05D004338 ORTHO05D005205 1.0e-27 127.1 99 64.6
Gohir.A10G114400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.0e-27 127.1 98 65.3
Gohir.D10G152700 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.7e-27 126.3 98 65.3
ECA233G2689 Erigeron canadensis HOM05D004338 ORTHO05D005205 8.5e-27 124.0 100 60.0
A09p57320 Brassica napus HOM05D004338 ORTHO05D005205 1.4e-26 123.2 101 59.4
BraA09t41125Z Brassica rapa HOM05D004338 ORTHO05D005205 1.4e-26 123.2 101 60.4
BcaB08g35592 Brassica carinata HOM05D004338 ORTHO05D005205 1.9e-26 122.9 101 59.4
BcaC07g41038 Brassica carinata HOM05D004338 ORTHO05D005205 1.9e-26 122.9 101 59.4
C08p40410 Brassica napus HOM05D004338 ORTHO05D005205 1.9e-26 122.9 101 59.4
BolC8t51609H Brassica oleracea HOM05D004338 ORTHO05D005205 1.9e-26 122.9 101 59.4
Sc13g0004920 Simmondsia chinensis HOM05D004338 ORTHO05D005205 1.9e-26 122.9 100 62.0
BcaB08g35114 Brassica carinata HOM05D004338 ORTHO05D005205 3.2e-26 122.1 101 58.4
arahy.Tifrunner.gnm1.ann1.1TW0Z8 Arachis hypogaea HOM05D004338 ORTHO05D005205 4.2e-26 121.7 98 61.2
arahy.Tifrunner.gnm1.ann1.A4GDND Arachis hypogaea HOM05D004338 ORTHO05D005205 4.2e-26 121.7 98 62.2
FAN22G2191 Fragaria x ananassa HOM05D004338 ORTHO05D005205 4.2e-26 121.7 99 65.7
HPP92_009627 Vanilla planifolia HOM05D004338 ORTHO05D005205 9.4e-26 120.6 100 56.0
AT5G02940 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 1.2e-25 120.2 101 59.4
MD11G1069400 Malus domestica HOM05D004338 ORTHO05D005205 1.2e-25 120.2 83 67.5
Hund21850 Selenicereus undatus HOM05D004338 ORTHO05D005205 1.2e-25 120.2 100 58.0
AL6G12230 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 1.6e-25 119.8 101 59.4
Carub.0006s0174 Capsella rubella HOM05D004338 ORTHO05D005205 1.6e-25 119.8 101 57.4
SalBow2G1414 Salvia bowleyana HOM05D004338 ORTHO05D005205 2.1e-25 119.4 101 58.4
HanXRQChr12g0381191 Helianthus annuus HOM05D004338 ORTHO05D005205 4.7e-25 118.2 100 56.0
DCAR_000306 Daucus carota HOM05D004338 ORTHO05D005205 7.9e-25 117.5 88 63.6
Hund07295 Selenicereus undatus HOM05D004338 ORTHO05D005205 5.1e-24 114.8 100 58.0
CARHR179760 Cardamine hirsuta HOM05D004338 ORTHO05D005205 1.1e-23 113.6 100 54.0
Zm00001eb004780 Zea mays HOM05D004338 ORTHO05D005205 3.7e-22 108.6 99 52.5
ATR0665G279 Amborella trichopoda HOM05D004338 ORTHO05D005205 1.8e-21 106.3 100 49.0
CDE03G0382 Ceratophyllum demersum HOM05D004338 ORTHO05D005205 3.1e-21 105.5 99 46.5
Os03g0163100 Oryza sativa ssp. japonica HOM05D004338 ORTHO05D005205 9.1e-21 104.0 100 46.0
AL8G16520 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 1.2e-20 103.6 100 51.0
DCAR_002355 Daucus carota HOM05D004338 ORTHO05D005205 1.7e-19 99.8 74 70.3
SEGI_12592 Sequoiadendron giganteum HOM05D004338 ORTHO05D005205 1.1e-18 97.1 97 45.4
FvH4_4g02230 Fragaria vesca HOM05D004338 ORTHO05D005205 1.2e-17 93.6 74 68.9
AagrBONN_evm.TU.Sc2ySwM_117.2360 Anthoceros agrestis HOM05D004338 ORTHO05D005205 7.4e-15 84.3 103 39.8
FAN02G4304 Fragaria x ananassa HOM05D004338 ORTHO05D005205 3.7e-14 82.0 93 54.8
Pp3c17_14700 Physcomitrium patens HOM05D004338 ORTHO05D005205 1.1e-13 80.5 107 40.2
SMO174G0094 Selaginella moellendorffii HOM05D004338 ORTHO05D005205 3.1e-13 79.0 80 46.2
AagrBONN_evm.TU.Sc2ySwM_117.2350 Anthoceros agrestis HOM05D004338 ORTHO05D005205 3.8e-11 72.0 110 36.4
SMO340G0070 Selaginella moellendorffii HOM05D004338 ORTHO05D005205 6.1e-09 64.7 78 44.9
unitig_748.g7312 Utricularia gibba HOM05D004338 ORTHO05D005205 4.4e-07 58.5 74 41.9


User provided reference genes

Program Settings