Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.4e-57 226.1 115 100.0
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.8e-57 225.7 114 100.0
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 1.3e-44 183.0 121 81.0
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 3.6e-42 174.9 120 76.7
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 4.8e-42 174.5 114 78.9
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 6.2e-42 174.1 103 84.5
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 6.2e-42 174.1 103 84.5
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.1e-41 173.3 110 79.1
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.1e-41 171.8 110 78.2
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 5.3e-41 171.0 103 81.6
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 1.5e-40 169.5 114 72.8
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 3.4e-40 168.3 103 82.5
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 7.6e-40 167.2 106 79.2
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 9.9e-40 166.8 118 74.6
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 1.7e-39 166.0 103 80.6
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 2.9e-39 165.2 105 77.1
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 3.8e-39 164.9 107 77.6
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 4.9e-39 164.5 112 76.8
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 4.9e-39 164.5 113 75.2
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 6.4e-39 164.1 114 71.1
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 8.4e-39 163.7 103 79.6
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 8.4e-39 163.7 103 79.6
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 8.4e-39 163.7 105 76.2
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 1.1e-38 163.3 103 79.6
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 1.1e-38 163.3 103 78.6
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.1e-38 163.3 103 78.6
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 1.1e-38 163.3 105 76.2
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 1.1e-38 163.3 105 76.2
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 1.1e-38 163.3 105 76.2
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.1e-38 163.3 115 73.9
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 1.4e-38 162.9 115 73.9
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 2.4e-38 162.2 106 77.4
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 2.4e-38 162.2 112 73.2
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 3.2e-38 161.8 102 77.5
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 4.2e-38 161.4 110 73.6
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 4.2e-38 161.4 109 77.1
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 4.2e-38 161.4 105 78.1
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 4.2e-38 161.4 107 76.6
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 4.2e-38 161.4 109 76.1
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 9.3e-38 160.2 105 77.1
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 9.3e-38 160.2 105 78.1
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 1.2e-37 159.8 103 78.6
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 1.6e-37 159.5 103 77.7
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 2.1e-37 159.1 110 73.6
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 2.1e-37 159.1 103 76.7
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 2.1e-37 159.1 103 76.7
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 2.7e-37 158.7 110 74.5
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 3.5e-37 158.3 103 76.7
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 4.6e-37 157.9 105 73.3
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 4.6e-37 157.9 110 70.0
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 4.6e-37 157.9 104 77.9
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 6.0e-37 157.5 112 71.4
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 7.9e-37 157.1 103 76.7
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 7.9e-37 157.1 103 76.7
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 7.9e-37 157.1 103 76.7
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 7.9e-37 157.1 105 75.2
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 7.9e-37 157.1 112 73.2
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 7.9e-37 157.1 103 77.7
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.3e-36 156.4 109 74.3
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 2.3e-36 155.6 115 66.1
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 2.3e-36 155.6 103 75.7
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.3e-36 155.6 103 75.7
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 3.0e-36 155.2 103 73.8
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 6.7e-36 154.1 102 74.5
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 8.7e-36 153.7 103 75.7
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 8.7e-36 153.7 103 74.8
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 1.1e-35 153.3 113 69.9
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.5e-35 152.9 103 72.8
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 4.3e-35 151.4 110 70.0
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 7.4e-35 150.6 106 73.6
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 7.4e-35 150.6 106 73.6
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 1.3e-34 149.8 114 68.4
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 1.3e-34 149.8 106 72.6
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 2.8e-34 148.7 103 72.8
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.7e-34 148.3 104 74.0
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.8e-34 147.9 104 73.1
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 6.2e-34 147.5 103 71.8
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 6.2e-34 147.5 103 71.8
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 6.2e-34 147.5 103 71.8
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 1.1e-33 146.7 106 70.8
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.1e-33 146.7 104 73.1
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 1.4e-33 146.4 110 67.3
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.4e-33 146.4 110 67.3
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 2.4e-33 145.6 119 64.7
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 3.1e-33 145.2 119 63.9
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 3.1e-33 145.2 110 68.2
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 4.0e-33 144.8 98 74.5
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 4.0e-33 144.8 110 67.3
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 5.3e-33 144.4 106 71.7
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 9.0e-33 143.7 103 70.9
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 2.0e-32 142.5 106 68.9
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 2.6e-32 142.1 106 68.9
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.6e-32 142.1 104 72.1
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 5.8e-32 141.0 106 67.9
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.2e-31 139.0 102 68.6
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 4.9e-31 137.9 110 62.7
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 4.9e-31 137.9 111 64.0
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.9e-31 137.9 104 70.2
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 6.5e-31 137.5 114 63.2
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 1.1e-30 136.7 101 68.3
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 3.2e-30 135.2 104 66.3
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 4.2e-30 134.8 83 83.1
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 9.3e-30 133.7 114 65.8
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 9.3e-30 133.7 114 62.3
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 9.3e-30 133.7 94 73.4
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 1.6e-29 132.9 99 68.7
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 2.7e-29 132.1 92 70.7
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 3.5e-29 131.7 109 64.2
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 4.6e-29 131.3 105 66.7
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 6.0e-29 131.0 118 60.2
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 7.9e-29 130.6 111 60.4
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.3e-28 129.8 105 63.8
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 3.0e-28 128.6 116 56.0
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 3.9e-28 128.3 82 76.8
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 1.5e-27 126.3 113 56.6
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.8e-26 122.1 113 61.1
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 2.8e-26 122.1 113 57.5
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.8e-25 119.4 102 58.8
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.8e-25 119.4 105 62.9
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.1e-25 118.6 107 62.6
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.2e-24 116.7 105 57.1
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 2.0e-24 115.9 105 60.0
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 2.0e-24 115.9 109 56.9
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.6e-24 115.5 106 57.5
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.6e-24 115.5 106 57.5
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 7.6e-24 114.0 107 59.8
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.3e-23 113.2 109 55.0
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.7e-23 112.8 102 56.9
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 2.2e-23 112.5 108 55.6
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 2.2e-23 112.5 109 55.0
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 6.5e-23 110.9 109 54.1
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 1.1e-22 110.2 105 55.2
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 1.1e-22 110.2 110 54.5
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 1.4e-22 109.8 108 53.7
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.9e-22 109.4 103 54.4
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 2.5e-22 109.0 110 53.6
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 3.5e-21 105.1 107 53.3
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 7.9e-21 104.0 113 51.3
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.3e-19 98.2 84 63.1
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 5.7e-19 97.8 100 56.0
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 9.7e-19 97.1 66 75.8
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 6.3e-18 94.4 103 48.5
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 5.3e-17 91.3 53 84.9
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 5.3e-17 91.3 73 65.8
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 5.3e-17 91.3 114 47.4
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 5.3e-17 91.3 110 48.2
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 1.1e-14 83.6 107 46.7
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 1.9e-14 82.8 106 41.5
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 5.5e-14 81.3 47 85.1
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 5.5e-14 81.3 57 70.2
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.2e-13 80.1 53 73.6
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.6e-13 79.7 54 72.2
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.8e-12 76.3 68 57.4
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 7.4e-11 70.9 66 50.0
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 9.7e-11 70.5 46 76.1
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 1.7e-10 69.7 69 58.0
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 1.7e-10 69.7 112 35.7
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 2.2e-10 69.3 112 42.0
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.1e-09 65.1 53 64.2
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 1.3e-07 60.1 65 49.2
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.2e-07 59.3 53 58.5
Thecc.09G051000 Theobroma cacao HOM05D004041 ORTHO05D004564 1.9e-06 56.2 46 58.7
SGA_v2.0_scaffold280G46826 Striga asiatica HOM05D003631 ORTHO05D004219 4.2e-06 55.1 50 54.0


User provided reference genes

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