Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020146 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D017545 1.8e-51 205.7 106 100.0
CSS0050323 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D017545 1.3e-30 136.3 104 75.0
CSS0021518 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 1.1e-21 106.7 66 86.4
Hma1.2p1_0033F.1_g020380 Hydrangea macrophylla HOM05D001826 ORTHO05D004184 9.5e-21 103.6 64 82.8
AUR62004319 Chenopodium quinoa HOM05D001826 ORTHO05D004184 2.8e-20 102.1 66 80.3
ClCG05G001700 Citrullus lanatus HOM05D001826 ORTHO05D004184 3.6e-20 101.7 66 80.3
MELO3C006129.2 Cucumis melo HOM05D001826 ORTHO05D004184 3.6e-20 101.7 66 80.3
CsaV3_3G009090 Cucumis sativus L. HOM05D001826 ORTHO05D004184 3.6e-20 101.7 66 80.3
AUR62033325 Chenopodium quinoa HOM05D001826 ORTHO05D004184 8.1e-20 100.5 66 80.3
AUR62033334 Chenopodium quinoa HOM05D001826 ORTHO05D004184 8.1e-20 100.5 66 80.3
HanXRQChr06g0169881 Helianthus annuus HOM05D001826 ORTHO05D004184 1.1e-19 100.1 66 80.3
Sed0024442 Sechium edule HOM05D001826 ORTHO05D004184 1.4e-19 99.8 66 80.3
vmacro13307 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 1.4e-19 99.8 63 81.0
Actinidia20930 Actinidia chinensis HOM05D001826 ORTHO05D004184 1.8e-19 99.4 66 81.8
Ah.05g176450 Amaranthus hybridus HOM05D001826 ORTHO05D004184 1.8e-19 99.4 66 78.8
HanXRQChr04g0121631 Helianthus annuus HOM05D001826 ORTHO05D004184 1.8e-19 99.4 66 78.8
Manes.05G037400 Manihot esculenta HOM05D001826 ORTHO05D004184 1.8e-19 99.4 66 77.3
CSS0017008 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 3.1e-19 98.6 66 78.8
CSS0033058 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 3.1e-19 98.6 66 78.8
Sed0005198 Sechium edule HOM05D001826 ORTHO05D004184 3.1e-19 98.6 66 77.3
MSTRG.20812 Avicennia marina HOM05D001826 ORTHO05D004184 5.2e-19 97.8 66 77.3
ECA236G3271 Erigeron canadensis HOM05D001826 ORTHO05D004184 5.2e-19 97.8 66 78.8
Nn6g33530 Nelumbo nucifera HOM05D001826 ORTHO05D004184 6.8e-19 97.4 66 74.2
Lj7A516T61 Lonicera japonica HOM05D001826 ORTHO05D004184 8.9e-19 97.1 66 77.3
TWI59G0720 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 8.9e-19 97.1 66 78.8
TWI59G1454 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 8.9e-19 97.1 66 78.8
Sabra14G0058600 Salix brachista HOM05D001826 ORTHO05D004184 1.2e-18 96.7 66 75.8
Hma1.2p1_0001F.1_g001660 Hydrangea macrophylla HOM05D001826 ORTHO05D004184 1.5e-18 96.3 66 72.7
Rhsim07G0018000 Rhododendron simsii HOM05D001826 ORTHO05D004184 2.6e-18 95.5 66 72.7
Solyc01g094290.3 Solanum lycopersicum HOM05D001826 ORTHO05D004184 2.6e-18 95.5 66 75.8
Sopen01g038090 Solanum pennellii HOM05D001826 ORTHO05D004184 2.6e-18 95.5 66 75.8
TWI23G0863 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 2.6e-18 95.5 66 77.3
PGSC0003DMG400000153 Solanum tuberosum HOM05D001826 ORTHO05D004184 3.4e-18 95.1 66 74.2
Potri.014G080800 Populus trichocarpa HOM05D001826 ORTHO05D004184 4.4e-18 94.7 66 72.7
Lalb_Chr10g0097211 Lupinus albus HOM05D001826 ORTHO05D004184 5.8e-18 94.4 66 75.8
Nn1g01431 Nelumbo nucifera HOM05D001826 ORTHO05D017545 5.8e-18 94.4 62 77.4
Potri.002G157200 Populus trichocarpa HOM05D001826 ORTHO05D004184 5.8e-18 94.4 66 74.2
Actinidia12714 Actinidia chinensis HOM05D001826 ORTHO05D004184 7.5e-18 94.0 66 72.7
Actinidia33431 Actinidia chinensis HOM05D001826 ORTHO05D004184 7.5e-18 94.0 66 72.7
Ciclev10018563m.g Citrus clementina HOM05D001826 ORTHO05D004184 7.5e-18 94.0 66 72.7
PGR042G0308 Punica granatum HOM05D001826 ORTHO05D004184 9.8e-18 93.6 66 72.7
Hund27301 Selenicereus undatus HOM05D001826 ORTHO05D004184 9.8e-18 93.6 65 73.8
TAR374G0698 Trochodendron aralioides HOM05D001826 ORTHO05D017545 9.8e-18 93.6 65 73.8
CiPaw.01G057800 Carya illinoinensis HOM05D001826 ORTHO05D004184 1.3e-17 93.2 68 70.6
Dinv32449 Davidia involucrata HOM05D001826 ORTHO05D004184 1.3e-17 93.2 66 80.3
HanXRQChr03g0093471 Helianthus annuus HOM05D001826 ORTHO05D004184 1.3e-17 93.2 63 76.2
Oeu014675.3 Olea europaea HOM05D001826 ORTHO05D004184 1.3e-17 93.2 66 72.7
vmacro20955 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 1.3e-17 93.2 66 77.3
Cpa.g.sc18.224 Carica papaya HOM05D001826 ORTHO05D004184 1.7e-17 92.8 66 75.8
FAN03G3317 Fragaria x ananassa HOM05D001826 ORTHO05D004184 1.7e-17 92.8 66 71.2
Sabra02G0124800 Salix brachista HOM05D001826 ORTHO05D004184 1.7e-17 92.8 66 71.2
arahy.Tifrunner.gnm1.ann1.8F4Z70 Arachis hypogaea HOM05D001826 ORTHO05D004184 2.2e-17 92.4 66 72.7
arahy.Tifrunner.gnm1.ann1.SLD8LW Arachis hypogaea HOM05D001826 ORTHO05D004184 2.2e-17 92.4 66 72.7
CDE06G1001 Ceratophyllum demersum HOM05D001826 ORTHO05D004184 2.2e-17 92.4 66 74.2
DCAR_006915 Daucus carota HOM05D001826 ORTHO05D004184 2.2e-17 92.4 66 72.7
FvH4_7g13660 Fragaria vesca HOM05D001826 ORTHO05D004184 2.2e-17 92.4 66 71.2
DCAR_015945 Daucus carota HOM05D001826 ORTHO05D004184 2.9e-17 92.0 66 72.7
Lalb_Chr19g0127041 Lupinus albus HOM05D001826 ORTHO05D004184 2.9e-17 92.0 66 71.2
Prupe.2G162700 Prunus persica HOM05D001826 ORTHO05D004184 2.9e-17 92.0 66 71.2
QL08p049532 Quercus lobata HOM05D001826 ORTHO05D004184 2.9e-17 92.0 65 70.8
Hund16940 Selenicereus undatus HOM05D001826 ORTHO05D004184 2.9e-17 92.0 67 76.1
TAR375G0082 Trochodendron aralioides HOM05D001826 ORTHO05D004184 3.7e-17 91.7 65 72.3
GSVIVG01026846001 Vitis vinifera HOM05D001826 ORTHO05D004184 3.7e-17 91.7 66 74.2
Migut.B01724 Erythranthe guttata HOM05D001826 ORTHO05D004184 4.9e-17 91.3 67 74.6
Peaxi162Scf00397g00111 Petunia axillaris HOM05D001826 ORTHO05D004184 4.9e-17 91.3 66 71.2
ECA240G3725 Erigeron canadensis HOM05D001826 ORTHO05D004184 6.4e-17 90.9 63 74.6
HanXRQChr13g0426341 Helianthus annuus HOM05D001826 ORTHO05D004184 6.4e-17 90.9 63 73.0
Lj1g0018622 Lotus japonicus HOM05D001826 ORTHO05D004184 6.4e-17 90.9 66 72.7
Aa31LG1G11160 Aethionema arabicum HOM05D001826 ORTHO05D004184 8.3e-17 90.5 66 72.7
ATR0680G345 Amborella trichopoda HOM05D001826 ORTHO05D004184 8.3e-17 90.5 66 75.8
CSS0033315 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D017545 8.3e-17 90.5 97 62.9
Duzib133G0016 Durio zibethinus HOM05D001826 ORTHO05D004184 8.3e-17 90.5 66 69.7
Nitab4.5_0001620g0100 Nicotiana tabacum HOM05D001826 ORTHO05D004184 8.3e-17 90.5 66 71.2
SalBow5G0163 Salvia bowleyana HOM05D001826 ORTHO05D004184 8.3e-17 90.5 66 72.7
SalBow5G2532 Salvia bowleyana HOM05D001826 ORTHO05D004184 8.3e-17 90.5 66 72.7
CAN.G78.31 Capsicum annuum HOM05D001826 ORTHO05D004184 1.1e-16 90.1 66 71.2
MD07G1141400 Malus domestica HOM05D001826 ORTHO05D004184 1.4e-16 89.7 66 68.2
Nitab4.5_0003111g0100 Nicotiana tabacum HOM05D001826 ORTHO05D004184 1.4e-16 89.7 66 69.7
arahy.Tifrunner.gnm1.ann1.253UZ6 Arachis hypogaea HOM05D001826 ORTHO05D004184 1.9e-16 89.4 68 70.6
arahy.Tifrunner.gnm1.ann1.42EX8Y Arachis hypogaea HOM05D001826 ORTHO05D004184 1.9e-16 89.4 68 70.6
DCAR_008601 Daucus carota HOM05D001826 ORTHO05D004184 1.9e-16 89.4 66 71.2
MD01G1053700 Malus domestica HOM05D001826 ORTHO05D004184 1.9e-16 89.4 66 68.2
TPR.G4440 Trifolium pratense HOM05D001826 ORTHO05D004184 1.9e-16 89.4 65 70.8
CSS0000841 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D017545 2.4e-16 89.0 96 59.4
Carub.0006s3656 Capsella rubella HOM05D001826 ORTHO05D004184 2.4e-16 89.0 68 73.5
Lsat_1_v5_gn_3_136621 Lactuca sativa HOM05D001826 ORTHO05D004184 2.4e-16 89.0 63 71.4
PSO063G0747 Papaver somniferum HOM05D001826 ORTHO05D004184 2.4e-16 89.0 66 69.7
PSO782G0182 Papaver somniferum HOM05D001826 ORTHO05D004184 2.4e-16 89.0 66 69.7
Thecc.01G363300 Theobroma cacao HOM05D001826 ORTHO05D004184 2.4e-16 89.0 66 69.7
Lsat_1_v5_gn_7_5161 Lactuca sativa HOM05D001826 ORTHO05D004184 3.2e-16 88.6 69 71.0
HPP92_020862 Vanilla planifolia HOM05D001826 ORTHO05D004184 3.2e-16 88.6 66 69.7
Aqoxy5G04023 Aquilegia oxysepala HOM05D001826 ORTHO05D004184 4.1e-16 88.2 66 69.7
Duzib138G1216 Durio zibethinus HOM05D001826 ORTHO05D004184 4.1e-16 88.2 66 68.2
FAN01G1586 Fragaria x ananassa HOM05D001826 ORTHO05D004184 5.4e-16 87.8 67 70.1
EL10Ac1g00529 Beta vulgaris HOM05D001826 ORTHO05D004184 7.1e-16 87.4 63 73.0
BcaB03g13616 Brassica carinata HOM05D001826 ORTHO05D004184 7.1e-16 87.4 68 70.6
A10p00230 Brassica napus HOM05D001826 ORTHO05D004184 7.1e-16 87.4 68 70.6
BraA10t42302Z Brassica rapa HOM05D001826 ORTHO05D004184 7.1e-16 87.4 68 70.6
Medtr8g031550 Medicago truncatula HOM05D001826 ORTHO05D004184 7.1e-16 87.4 64 70.3
Ca_23666_v3 Cicer arietinum L. HOM05D001826 ORTHO05D004184 9.2e-16 87.0 64 68.8
Phvul.008G067800 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 9.2e-16 87.0 80 60.0
Glyma.09G262000 Glycine max HOM05D001826 ORTHO05D004184 1.2e-15 86.7 68 67.6
C05p00260 Brassica napus HOM05D001826 ORTHO05D004184 1.6e-15 86.3 61 72.1
BolC5t28815H Brassica oleracea HOM05D001826 ORTHO05D004184 1.6e-15 86.3 61 72.1
Cc02_g37680 Coffea canephora HOM05D001826 ORTHO05D004184 1.6e-15 86.3 66 68.2
Glyma.18G230100 Glycine max HOM05D001826 ORTHO05D004184 1.6e-15 86.3 68 67.6
Gohir.A12G105000 Gossypium hirsutum HOM05D001826 ORTHO05D004184 2.7e-15 85.5 60 70.0
AT1G01790 Arabidopsis thaliana HOM05D001826 ORTHO05D004184 6.0e-15 84.3 65 72.3
A10p00260 Brassica napus HOM05D001826 ORTHO05D004184 6.0e-15 84.3 67 70.1
C05p00270 Brassica napus HOM05D001826 ORTHO05D004184 6.0e-15 84.3 67 70.1
BolC5t28817H Brassica oleracea HOM05D001826 ORTHO05D004184 6.0e-15 84.3 67 70.1
SGA_v2.0_scaffold277G46674 Striga asiatica HOM05D001826 ORTHO05D004184 6.0e-15 84.3 68 66.2
MSTRG.4866 Avicennia marina HOM05D001826 ORTHO05D004184 7.8e-15 84.0 62 67.7
Lj9C580G11 Lonicera japonica HOM05D001826 ORTHO05D004184 7.8e-15 84.0 66 65.2
MBI17_g08175_MAGBIO Magnolia biondii HOM05D005566 ORTHO05D004184 7.8e-15 84.0 60 73.3
RcHm_v2.0_Chr1g0353741 Rosa chinensis HOM05D001826 ORTHO05D004184 7.8e-15 84.0 66 66.7
DCAR_025143 Daucus carota HOM05D001826 ORTHO05D004184 1.0e-14 83.6 67 67.2
Glyma.03G014000 Glycine max HOM05D001826 ORTHO05D004184 1.0e-14 83.6 63 69.8
Sp1g00490 Schrenkiella parvula HOM05D001826 ORTHO05D004184 1.0e-14 83.6 68 67.6
AL1G10550 Arabidopsis lyrata HOM05D001826 ORTHO05D004184 1.3e-14 83.2 64 73.4
Ca_07891_v3 Cicer arietinum L. HOM05D001826 ORTHO05D004184 1.3e-14 83.2 68 67.6
Eucgr.E00180 Eucalyptus grandis HOM05D001826 ORTHO05D004184 1.3e-14 83.2 66 66.7
Lj3g0020333 Lotus japonicus HOM05D001826 ORTHO05D004184 1.3e-14 83.2 61 73.8
Aa31LG5G380 Aethionema arabicum HOM05D001826 ORTHO05D004184 1.7e-14 82.8 64 70.3
Glyma.07G073700 Glycine max HOM05D001826 ORTHO05D004184 1.7e-14 82.8 63 68.3
SalBow3G1103 Salvia bowleyana HOM05D001826 ORTHO05D004184 2.3e-14 82.4 66 66.7
BcaB03g13615 Brassica carinata HOM05D001826 ORTHO05D004184 3.0e-14 82.0 67 68.7
Thhalv10006595m.g Eutrema salsugineum HOM05D001826 ORTHO05D004184 3.9e-14 81.6 61 68.9
Thhalv10006607m.g Eutrema salsugineum HOM05D001826 ORTHO05D004184 3.9e-14 81.6 61 68.9
CANSAT56G1923 Cannabis sativa HOM05D001826 ORTHO05D004184 5.1e-14 81.3 67 65.7
CARHR000530 Cardamine hirsuta HOM05D001826 ORTHO05D004184 6.6e-14 80.9 61 72.1
THA.LOC104801451 Tarenaya hassleriana HOM05D001826 ORTHO05D004184 8.6e-14 80.5 70 67.1
Gohir.D12G108900 Gossypium hirsutum HOM05D001826 ORTHO05D004184 1.1e-13 80.1 60 66.7
Gorai.008G118000 Gossypium raimondii HOM05D001826 ORTHO05D004184 1.1e-13 80.1 60 66.7
Medtr7g076700 Medicago truncatula HOM05D001826 ORTHO05D004184 1.1e-13 80.1 68 64.7
Psat3g110880 Pisum sativum HOM05D001826 ORTHO05D004184 1.1e-13 80.1 68 64.7
TPR.G37729 Trifolium pratense HOM05D001826 ORTHO05D004184 1.1e-13 80.1 68 64.7
VMungo1383G3314 Vigna mungo HOM05D001826 ORTHO05D004184 1.5e-13 79.7 83 57.8
CiPaw.02G028500 Carya illinoinensis HOM05D001826 ORTHO05D004184 2.5e-13 79.0 67 64.2
BraA09t42264Z Brassica rapa HOM05D001826 ORTHO05D004184 3.3e-13 78.6 62 66.1
Psat4g153760 Pisum sativum HOM05D001826 ORTHO05D004184 3.3e-13 78.6 54 75.9
AL6G52810 Arabidopsis lyrata HOM05D001826 ORTHO05D004184 4.3e-13 78.2 67 67.2
Sp1g00500 Schrenkiella parvula HOM05D001826 ORTHO05D004184 4.3e-13 78.2 67 70.1
Zm00001eb433980 Zea mays HOM05D001826 ORTHO05D004184 4.3e-13 78.2 66 65.2
AT4G00630 Arabidopsis thaliana HOM05D001826 ORTHO05D004184 5.6e-13 77.8 67 67.2
Carub.0001s0042 Capsella rubella HOM05D001826 ORTHO05D004184 7.3e-13 77.4 68 70.6
BcaC07g42427 Brassica carinata HOM05D001826 ORTHO05D017545 2.1e-12 75.9 62 64.5
C08p53870 Brassica napus HOM05D001826 ORTHO05D004184 2.1e-12 75.9 62 64.5
BraA09t42181Z Brassica rapa HOM05D001826 ORTHO05D017545 2.8e-12 75.5 62 64.5
BolC8t52901H Brassica oleracea HOM05D001826 ORTHO05D004184 4.7e-12 74.7 62 64.5
Atru.chr5.450 Acer truncatum HOM05D001826 ORTHO05D004184 1.4e-11 73.2 46 80.4
Haze_15465 Corylus avellana HOM05D001826 ORTHO05D004184 1.4e-11 73.2 60 68.3
COL.COLO4_12675 Corchorus olitorius HOM05D001826 ORTHO05D004184 3.1e-11 72.0 66 62.1
VMungo0331G1572 Vigna mungo HOM05D001826 ORTHO05D004184 5.2e-11 71.2 61 62.3
Phvul.010G095600 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 1.2e-10 70.1 63 65.1
Phvul.010G095800 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 4.4e-10 68.2 63 63.5
Gohir.D08G151300 Gossypium hirsutum HOM05D001826 ORTHO05D004184 1.3e-09 66.6 65 56.9
Gorai.004G157200 Gossypium raimondii HOM05D001826 ORTHO05D004184 1.3e-09 66.6 65 56.9
Mapoly0055s0072 Marchantia polymorpha HOM05D001826 ORTHO05D004184 1.3e-09 66.6 63 54.0
Gohir.A08G130000 Gossypium hirsutum HOM05D001826 ORTHO05D004184 1.7e-09 66.2 65 56.9
SMO331G0018 Selaginella moellendorffii HOM05D001826 ORTHO05D004184 1.4e-08 63.2 57 57.9
Pp3c7_22160 Physcomitrium patens HOM05D001826 ORTHO05D004184 2.4e-08 62.4 59 61.0
Pp3c11_22410 Physcomitrium patens HOM05D001826 ORTHO05D004184 4.1e-08 61.6 50 66.0
unitig_8.g3808 Utricularia gibba HOM05D001826 ORTHO05D004184 1.2e-07 60.1 104 43.3
Pp3c11_6640 Physcomitrium patens HOM05D001826 ORTHO05D004184 3.5e-07 58.5 58 56.9
CBR_g18697 Chara braunii HOM05D001826 ORTHO05D004184 5.1e-06 54.7 54 50.0


User provided reference genes

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