Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020125 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 3.7e-44 181.0 83 100.0
CSS0026204 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 3.7e-44 181.0 83 100.0
CSS0001563 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 2.2e-25 118.6 83 73.5
CSS0038907 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 2.2e-25 118.6 83 73.5
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 8.0e-15 83.6 81 54.3
Atru.ctg97_1.17 Acer truncatum HOM05D002831 ORTHO05D010484 1.8e-14 82.4 59 67.8
CiPaw.06G003400 Carya illinoinensis HOM05D002831 ORTHO05D010484 6.8e-14 80.5 86 53.5
Manes.14G022900 Manihot esculenta HOM05D002831 ORTHO05D010484 4.4e-13 77.8 53 71.7
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 4.4e-13 77.8 57 64.9
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 5.7e-13 77.4 57 61.4
Manes.06G152150 Manihot esculenta HOM05D002831 ORTHO05D010484 9.8e-13 76.6 53 69.8
Nn1g01626 Nelumbo nucifera HOM05D002831 ORTHO05D010484 2.2e-12 75.5 53 71.7
MD01G1208000 Malus domestica HOM05D002831 ORTHO05D010484 2.8e-12 75.1 53 67.9
Potri.004G080000 Populus trichocarpa HOM05D002831 ORTHO05D010484 2.8e-12 75.1 53 69.8
Prupe.2G300500 Prunus persica HOM05D002831 ORTHO05D010484 2.8e-12 75.1 53 67.9
MD07G1278600 Malus domestica HOM05D002831 ORTHO05D010484 4.8e-12 74.3 62 58.1
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 6.3e-12 73.9 61 62.3
CiPaw.06G003200 Carya illinoinensis HOM05D002831 ORTHO05D010484 1.8e-11 72.4 53 67.9
Prupe.7G027400 Prunus persica HOM05D002831 ORTHO05D010484 1.8e-11 72.4 51 66.7
Potri.017G143300 Populus trichocarpa HOM05D002831 ORTHO05D010484 2.4e-11 72.0 53 66.0
Thecc.03G183800 Theobroma cacao HOM05D002831 ORTHO05D010484 1.6e-10 69.3 53 62.3
Glyma.20G162551 Glycine max HOM05D002831 ORTHO05D010484 2.0e-10 68.9 53 62.3
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 4.5e-10 67.8 52 59.6
Gohir.D09G177300 Gossypium hirsutum HOM05D002831 ORTHO05D010484 1.0e-09 66.6 53 60.4
Peaxi162Scf00444g00118 Petunia axillaris HOM05D002831 ORTHO05D010484 1.0e-09 66.6 53 64.2
Gorai.006G199300 Gossypium raimondii HOM05D002831 ORTHO05D010484 1.3e-09 66.2 53 58.5
Glyma.09G132600 Glycine max HOM05D002831 ORTHO05D010484 1.7e-09 65.9 53 62.3
Glyma.16G179250 Glycine max HOM05D002831 ORTHO05D010484 1.7e-09 65.9 53 62.3
Cc02_g02410 Coffea canephora HOM05D002831 ORTHO05D010484 2.2e-09 65.5 53 64.2
Glyma.10G231251 Glycine max HOM05D002831 ORTHO05D010484 3.8e-09 64.7 53 56.6
Gohir.D11G011200 Gossypium hirsutum HOM05D002831 ORTHO05D010484 5.0e-09 64.3 53 56.6
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 5.0e-09 64.3 52 59.6
Lalb_Chr03g0034821 Lupinus albus HOM05D002831 ORTHO05D010484 8.5e-09 63.5 50 56.0
Lalb_Chr02g0141241 Lupinus albus HOM05D002831 ORTHO05D010484 1.9e-08 62.4 54 61.1
FAN03G0192 Fragaria x ananassa HOM05D002831 ORTHO05D010484 2.5e-08 62.0 59 50.8
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 3.2e-08 61.6 53 58.5
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.2e-08 61.2 53 56.6
Solyc03g007990.2 Solanum lycopersicum HOM05D002831 ORTHO05D010484 4.2e-08 61.2 53 62.3
Nitab4.5_0000084g0420 Nicotiana tabacum HOM05D002831 ORTHO05D010484 7.2e-08 60.5 52 59.6
Gohir.A11G012000 Gossypium hirsutum HOM05D002831 ORTHO05D010484 9.4e-08 60.1 53 54.7
CAN.G126.13 Capsicum annuum HOM05D002831 ORTHO05D010484 1.6e-07 59.3 53 60.4
ClCG05G008350 Citrullus lanatus HOM05D002831 ORTHO05D010484 2.1e-07 58.9 61 49.2
CiPaw.12G018400 Carya illinoinensis HOM05D002831 ORTHO05D010484 3.6e-07 58.2 44 65.9
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 4.7e-07 57.8 43 65.1
Lalb_Chr21g0305231 Lupinus albus HOM05D002831 ORTHO05D010484 4.7e-07 57.8 54 57.4
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 8.0e-07 57.0 43 65.1
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.4e-06 56.2 46 58.7
Gohir.A12G255400 Gossypium hirsutum HOM05D002831 ORTHO05D010484 2.3e-06 55.5 53 52.8
Gohir.D12G256800 Gossypium hirsutum HOM05D002831 ORTHO05D010484 2.3e-06 55.5 53 52.8
Gorai.008G275000 Gossypium raimondii HOM05D002831 ORTHO05D010484 2.3e-06 55.5 53 52.8
Carub.0008s1269 Capsella rubella HOM05D002831 ORTHO05D010484 8.8e-06 53.5 53 50.9


User provided reference genes

Program Settings