Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 7.6e-208 726.9 352 100.0
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 7.6e-208 726.9 352 100.0
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 7.7e-176 620.5 354 83.6
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.1e-173 612.5 352 84.4
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.0e-172 608.6 348 83.9
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 5.7e-171 604.4 349 82.2
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 2.2e-170 602.4 354 82.2
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 1.2e-160 570.1 360 78.1
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.6e-157 559.7 372 74.7
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 3.0e-156 555.4 349 77.4
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 4.0e-156 555.1 350 77.7
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 3.4e-155 552.0 358 76.0
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 3.7e-154 548.5 352 76.1
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 8.3e-154 547.4 366 74.3
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 1.1e-153 547.0 364 74.7
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 3.1e-153 545.4 371 74.7
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 5.4e-153 544.7 350 75.7
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 9.1e-153 543.9 352 76.1
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 3.5e-152 542.0 348 74.7
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 1.0e-151 540.4 358 75.1
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.3e-151 540.0 360 73.1
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 1.7e-151 539.7 358 74.0
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 1.7e-151 539.7 342 75.4
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.7e-151 539.7 375 71.7
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.3e-151 539.3 365 74.2
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.9e-151 538.9 365 74.2
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 3.8e-151 538.5 348 74.1
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.5e-150 536.6 374 71.9
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 2.5e-150 535.8 357 73.9
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 2.5e-150 535.8 356 75.0
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 3.3e-150 535.4 361 74.2
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 1.2e-149 533.5 359 72.7
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 6.1e-149 531.2 363 71.3
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 1.4e-148 530.0 326 79.1
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.8e-148 529.6 350 73.4
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 8.9e-148 527.3 351 73.2
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.5e-147 526.6 353 72.8
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.4e-147 525.4 364 72.0
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 3.4e-147 525.4 353 72.5
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 5.7e-147 524.6 353 72.5
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 9.8e-147 523.9 349 74.2
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 9.8e-147 523.9 347 73.2
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 9.8e-147 523.9 353 74.2
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 2.9e-146 522.3 363 70.5
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 4.9e-146 521.5 365 69.9
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 4.9e-146 521.5 355 71.5
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 8.3e-146 520.8 349 71.9
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 1.1e-145 520.4 349 73.4
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 1.1e-145 520.4 355 72.4
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 1.1e-145 520.4 347 72.9
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.1e-145 520.4 349 73.6
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 1.8e-145 519.6 363 70.5
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.8e-145 519.6 356 71.3
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 4.1e-145 518.5 358 72.6
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 1.2e-144 516.9 348 71.6
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 1.2e-144 516.9 344 74.1
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.6e-144 516.5 344 72.1
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 1.6e-144 516.5 352 71.9
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.5e-144 515.4 355 71.3
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.6e-144 515.0 355 71.3
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 7.8e-144 514.2 349 72.2
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 7.8e-144 514.2 356 71.1
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 1.0e-143 513.8 349 72.2
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 2.3e-143 512.7 349 72.5
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.3e-143 512.7 355 71.3
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 2.3e-143 512.7 371 69.8
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 2.3e-143 512.7 358 71.8
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 5.0e-143 511.5 342 75.1
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 5.0e-143 511.5 348 70.4
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 6.6e-143 511.1 347 72.3
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 2.5e-142 509.2 374 67.9
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 9.5e-142 507.3 354 70.3
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 1.2e-141 506.9 358 70.1
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 1.6e-141 506.5 349 72.8
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 6.2e-141 504.6 349 70.8
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 2.3e-140 502.7 356 70.8
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 3.7e-138 495.4 344 73.5
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 8.3e-138 494.2 352 69.3
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.0e-136 488.0 352 69.0
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.7e-135 486.5 328 71.3
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 8.6e-135 484.2 374 67.4
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 1.9e-134 483.0 349 67.9
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.5e-134 482.6 438 60.0
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.3e-134 482.3 352 68.8
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 4.3e-134 481.9 353 68.6
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 4.3e-134 481.9 360 69.7
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 5.6e-134 481.5 353 69.1
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 2.1e-133 479.6 349 69.3
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 2.8e-133 479.2 372 65.9
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 3.6e-133 478.8 364 63.5
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 1.8e-132 476.5 353 69.4
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 5.2e-132 474.9 353 68.8
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 1.2e-131 473.8 521 51.6
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 1.5e-131 473.4 353 68.0
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 1.5e-131 473.4 353 67.7
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 2.6e-131 472.6 349 68.8
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 3.4e-131 472.2 353 67.4
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 4.4e-131 471.9 349 69.3
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 5.8e-131 471.5 353 69.1
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 7.5e-131 471.1 349 69.1
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 7.5e-131 471.1 353 68.3
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.9e-130 469.2 420 60.0
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 1.1e-129 467.2 416 59.4
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.1e-129 467.2 362 68.0
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.4e-129 466.8 353 67.1
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 3.2e-129 465.7 345 69.0
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 4.1e-129 465.3 374 62.6
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 5.4e-129 464.9 345 69.0
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 7.1e-129 464.5 351 68.1
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 1.0e-127 460.7 349 67.9
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 1.0e-127 460.7 349 67.9
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 1.9e-126 456.4 345 67.2
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 5.6e-126 454.9 349 66.5
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 7.3e-126 454.5 367 62.1
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 2.1e-125 453.0 347 68.0
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.5e-123 446.8 349 64.5
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 2.0e-123 446.4 354 63.6
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 3.4e-123 445.7 360 63.6
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 2.2e-122 443.0 349 64.8
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 4.9e-122 441.8 353 65.2
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.9e-121 439.9 376 61.7
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 7.1e-121 438.0 349 66.2
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 1.2e-120 437.2 343 67.3
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 3.9e-119 432.2 350 63.1
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.1e-118 430.6 314 68.2
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.1e-117 426.4 365 61.4
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 2.1e-117 426.4 329 68.1
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 4.7e-117 425.2 363 60.9
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 6.2e-117 424.9 312 67.6
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 5.8e-115 418.3 330 67.9
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 9.6e-110 401.0 330 62.1
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.4e-108 397.1 363 57.3
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 6.2e-101 371.7 350 56.9
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 5.6e-94 348.6 343 54.8
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 8.1e-93 344.7 238 69.3
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 3.5e-88 329.3 391 46.8
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 1.8e-84 317.0 379 45.6
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.0e-79 299.7 223 70.4
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 4.5e-75 285.8 379 44.3
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 7.7e-75 285.0 301 53.5
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 1.7e-74 283.9 166 78.3
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 3.2e-73 279.6 373 45.3
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 6.1e-72 275.4 238 56.3
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 9.7e-70 268.1 259 59.5
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 9.7e-70 268.1 259 59.5
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.6e-67 260.0 219 65.8
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 2.6e-67 260.0 351 41.6
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 2.2e-66 256.9 234 66.7
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 8.8e-63 245.0 386 37.6
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 2.0e-59 233.8 176 69.9
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 1.5e-57 227.6 193 61.7
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 4.8e-53 212.6 135 78.5
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 3.1e-44 183.3 128 62.5
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 4.2e-41 172.9 102 76.5
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.1e-36 156.8 122 63.1
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 5.4e-36 156.0 364 33.5
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.5e-33 147.9 344 32.6
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 7.8e-27 125.6 72 76.4
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 7.8e-19 99.0 78 67.9
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 7.5e-14 82.4 115 43.5
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 2.8e-08 63.9 33 75.8


User provided reference genes

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