Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 2.3e-174 615.9 419 100.0
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 9.5e-173 610.5 419 98.1
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 6.1e-63 245.7 436 47.0
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 8.3e-52 208.8 465 47.1
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 1.1e-51 208.4 424 39.4
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 6.0e-50 202.6 398 38.7
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.3e-49 201.4 425 37.6
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 9.5e-48 195.3 256 47.3
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 6.2e-47 192.6 194 54.1
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 8.9e-46 188.7 457 40.9
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 7.5e-45 185.7 250 47.6
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 1.1e-43 181.8 204 52.0
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 4.1e-43 179.9 422 34.1
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 7.0e-43 179.1 138 63.8
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 2.7e-42 177.2 269 42.4
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.7e-42 177.2 421 35.6
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 3.5e-42 176.8 137 63.5
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 4.6e-42 176.4 184 52.7
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 7.8e-42 175.6 165 56.4
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 1.3e-41 174.9 134 64.9
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 3.9e-41 173.3 193 50.8
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 6.6e-41 172.6 431 34.1
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 6.6e-41 172.6 269 42.8
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 6.6e-41 172.6 425 41.4
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 1.5e-40 171.4 258 42.6
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 1.5e-40 171.4 418 31.1
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.5e-40 171.4 418 33.7
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 2.5e-40 170.6 243 45.3
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 2.5e-40 170.6 277 43.7
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 2.5e-40 170.6 236 44.5
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 3.3e-40 170.2 414 32.6
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 4.3e-40 169.9 442 33.0
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 4.3e-40 169.9 267 43.4
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 5.6e-40 169.5 273 41.0
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 5.6e-40 169.5 234 43.6
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 9.5e-40 168.7 228 44.3
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 1.2e-39 168.3 228 43.9
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 3.6e-39 166.8 266 40.6
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 3.6e-39 166.8 134 64.2
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 4.7e-39 166.4 236 43.6
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 4.7e-39 166.4 136 60.3
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 6.2e-39 166.0 444 30.6
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 8.1e-39 165.6 276 38.4
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.4e-38 164.9 217 44.7
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 1.4e-38 164.9 419 33.7
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 1.8e-38 164.5 137 57.7
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 3.1e-38 163.7 234 43.2
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 6.8e-38 162.5 270 41.5
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 3.4e-37 160.2 181 50.8
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 5.8e-37 159.5 250 42.0
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 7.5e-37 159.1 187 49.7
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 7.5e-37 159.1 135 57.8
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 7.5e-37 159.1 235 43.8
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 9.9e-37 158.7 270 39.6
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.7e-36 157.9 238 42.9
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 1.7e-36 157.9 207 48.3
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 2.2e-36 157.5 286 39.2
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 3.7e-36 156.8 135 56.3
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 6.4e-36 156.0 315 39.7
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 1.4e-35 154.8 172 51.2
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 1.4e-35 154.8 187 47.6
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 1.9e-35 154.5 206 43.7
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 2.4e-35 154.1 137 54.7
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 2.4e-35 154.1 275 40.0
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 5.4e-35 152.9 265 39.2
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 2.1e-34 151.0 284 39.1
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 2.7e-34 150.6 137 52.6
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 3.5e-34 150.2 250 42.4
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 4.6e-34 149.8 137 51.8
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 4.6e-34 149.8 236 36.9
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 6.0e-34 149.4 137 51.8
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 6.0e-34 149.4 433 30.5
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 6.0e-34 149.4 236 41.9
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 6.0e-34 149.4 143 51.7
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 7.8e-34 149.1 137 51.8
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 7.8e-34 149.1 137 51.1
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.0e-33 148.7 137 54.0
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 1.7e-33 147.9 191 45.5
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 1.7e-33 147.9 186 47.3
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 3.9e-33 146.7 191 47.1
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 5.1e-33 146.4 315 35.9
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 8.6e-33 145.6 138 52.2
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 1.1e-32 145.2 137 52.6
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 1.1e-32 145.2 209 42.1
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 1.9e-32 144.4 246 37.8
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 2.5e-32 144.1 181 42.0
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 5.6e-32 142.9 257 37.4
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 5.6e-32 142.9 475 28.4
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 9.5e-32 142.1 188 42.6
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 1.2e-31 141.7 145 49.0
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.6e-31 141.4 133 54.1
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 2.1e-31 141.0 139 51.8
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 3.6e-31 140.2 135 53.3
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 1.8e-30 137.9 134 53.0
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 1.5e-29 134.8 97 62.9
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 1.5e-29 134.8 131 52.7
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 2.0e-29 134.4 246 37.4
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 2.6e-29 134.0 136 50.7
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 4.4e-29 133.3 248 37.9
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 7.6e-29 132.5 131 53.4
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 7.6e-29 132.5 128 51.6
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 1.4e-27 128.3 188 43.6
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 4.2e-27 126.7 137 46.7
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 5.4e-27 126.3 130 48.5
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 7.1e-27 125.9 183 37.7
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 6.0e-26 122.9 216 39.8
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 7.8e-26 122.5 130 46.9
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 7.8e-26 122.5 130 46.9
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 1.7e-25 121.3 137 50.4
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 1.7e-25 121.3 145 47.6
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 6.6e-25 119.4 458 26.4
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 2.5e-24 117.5 264 34.1
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 4.3e-24 116.7 137 44.5
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 7.3e-24 115.9 146 45.2
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 2.1e-23 114.4 137 44.5
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 6.2e-23 112.8 185 38.9
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 8.1e-23 112.5 136 49.3
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 1.1e-22 112.1 137 43.8
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 3.1e-22 110.5 119 49.6
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 3.9e-17 93.6 195 33.8
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 8.7e-17 92.4 83 53.0
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 5.6e-16 89.7 227 33.9
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 7.3e-16 89.4 106 44.3
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.1e-15 87.8 190 32.1
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 3.4e-13 80.5 59 61.0
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 9.9e-13 79.0 59 59.3
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 4.9e-12 76.6 137 38.0
HPP92_004419 Vanilla planifolia HOM05D024549 ORTHO05D006778 3.2e-11 73.9 271 26.6
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 9.3e-11 72.4 175 33.1
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 1.6e-10 71.6 139 33.1
Zm00001eb139380 Zea mays HOM05D005242 ORTHO05D006778 1.0e-09 68.9 101 33.7
MBI09_g45000_MAGBIO Magnolia biondii HOM05D005242 ORTHO05D006778 7.4e-08 62.8 72 43.1
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 2.1e-07 61.2 209 26.8
Os12g0165200 Oryza sativa ssp. japonica HOM05D005242 ORTHO05D006778 4.8e-07 60.1 132 27.3
Pp3c19_14230 Physcomitrium patens HOM05D000136 ORTHO05D000080 8.1e-07 59.3 93 35.5
Pp3c8_6770 Physcomitrium patens HOM05D000136 ORTHO05D000080 1.8e-06 58.2 95 33.7
ECA232G5004 Erigeron canadensis HOM05D005242 ORTHO05D006778 2.4e-06 57.8 98 36.7
AL2G16910 Arabidopsis lyrata HOM05D000136 ORTHO05D000080 3.1e-06 57.4 94 35.1
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 5.3e-06 56.6 139 29.5
Carub.0002s0540 Capsella rubella HOM05D000136 ORTHO05D000080 6.9e-06 56.2 94 34.0
Nitab4.5_0004295g0070 Nicotiana tabacum HOM05D000136 ORTHO05D000080 9.0e-06 55.8 92 34.8
SEGI_01966 Sequoiadendron giganteum HOM05D005242 ORTHO05D006778 9.0e-06 55.8 203 25.6


User provided reference genes

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