Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001418 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 4.4e-42 174.1 81 100.0
CSS0020019 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 4.4e-42 174.1 81 100.0
ClCG02G005510 Citrullus lanatus HOM05D001372 ORTHO05D007311 6.1e-36 153.7 82 84.1
Peaxi162Scf00016g00132 Petunia axillaris HOM05D001372 ORTHO05D007311 1.4e-35 152.5 82 86.6
Rhsim11G0170800 Rhododendron simsii HOM05D001193 ORTHO05D007311 1.4e-35 152.5 81 84.0
Solyc01g109070.2 Solanum lycopersicum HOM05D001372 ORTHO05D007311 3.0e-35 151.4 82 85.4
Sopen01g051270 Solanum pennellii HOM05D001372 ORTHO05D007311 3.0e-35 151.4 82 85.4
CiPaw.05G058700 Carya illinoinensis HOM05D001372 ORTHO05D007311 4.0e-35 151.0 85 77.6
TWI38G1937 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 4.0e-35 151.0 84 86.9
CAN.G322.87 Capsicum annuum HOM05D001372 ORTHO05D007311 5.2e-35 150.6 82 85.4
MELO3C018416.2 Cucumis melo HOM05D001372 ORTHO05D007311 5.2e-35 150.6 86 80.2
CsaV3_7G010120 Cucumis sativus L. HOM05D001372 ORTHO05D007311 5.2e-35 150.6 86 81.4
Hma1.2p1_1353F.1_g277710 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 5.2e-35 150.6 86 79.1
Cfa004947 Carpinus fangiana HOM05D001372 ORTHO05D007311 1.2e-34 149.4 86 76.7
Medtr4g068370 Medicago truncatula HOM05D001372 ORTHO05D007311 1.2e-34 149.4 82 84.1
Haze_02464 Corylus avellana HOM05D001372 ORTHO05D007311 2.6e-34 148.3 86 76.7
Manes.15G145700 Manihot esculenta HOM05D001372 ORTHO05D007311 2.6e-34 148.3 87 81.6
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 2.6e-34 148.3 83 79.5
CSS0021822 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 3.4e-34 147.9 84 82.1
CAN.G134.164 Capsicum annuum HOM05D001372 ORTHO05D007311 3.4e-34 147.9 82 82.9
Duzib052G0457 Durio zibethinus HOM05D001372 ORTHO05D007311 4.4e-34 147.5 84 83.3
Hma1.2p1_0584F.1_g183260 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 4.4e-34 147.5 82 80.5
TWI38G0580 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 4.4e-34 147.5 83 81.9
unitig_60.g25449 Utricularia gibba HOM05D001372 ORTHO05D007311 4.4e-34 147.5 82 85.4
Cc02_g18240 Coffea canephora HOM05D001372 ORTHO05D007311 5.7e-34 147.1 85 82.4
Glyma.11G123600 Glycine max HOM05D001372 ORTHO05D007311 7.5e-34 146.7 88 78.4
Lsat_1_v5_gn_9_109081 Lactuca sativa HOM05D001372 ORTHO05D007311 7.5e-34 146.7 83 84.3
QL11p039238 Quercus lobata HOM05D001372 ORTHO05D007311 7.5e-34 146.7 82 79.3
Cpa.g.sc62.81 Carica papaya HOM05D001372 ORTHO05D007311 9.8e-34 146.4 82 79.3
Dinv28822 Davidia involucrata HOM05D001372 ORTHO05D007311 9.8e-34 146.4 86 79.1
Aqoxy6G00480 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.3e-33 146.0 83 81.9
CARHR106260 Cardamine hirsuta HOM05D001372 ORTHO05D007311 1.3e-33 146.0 82 80.5
SalBow3G1216 Salvia bowleyana HOM05D001372 ORTHO05D007311 1.3e-33 146.0 82 84.1
Aqoxy230s002 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.7e-33 145.6 83 80.7
Aqoxy4G03213 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.7e-33 145.6 83 80.7
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 1.7e-33 145.6 83 75.9
Gorai.008G044200 Gossypium raimondii HOM05D001372 ORTHO05D007311 1.7e-33 145.6 84 83.3
Lalb_Chr01g0002991 Lupinus albus HOM05D001372 ORTHO05D007311 1.7e-33 145.6 82 82.9
MD10G1086600 Malus domestica HOM05D001372 ORTHO05D007311 1.7e-33 145.6 83 80.7
Prupe.8G112600 Prunus persica HOM05D001372 ORTHO05D007311 1.7e-33 145.6 83 79.5
AUR62021787 Chenopodium quinoa HOM05D001372 ORTHO05D007311 2.2e-33 145.2 83 77.1
Duzib132G0052 Durio zibethinus HOM05D001372 ORTHO05D007311 2.2e-33 145.2 84 81.0
Gohir.D12G042200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 2.2e-33 145.2 84 83.3
SalBow5G1173 Salvia bowleyana HOM05D001372 ORTHO05D007311 2.2e-33 145.2 82 82.9
CANSAT80G1477 Cannabis sativa HOM05D001372 ORTHO05D007311 2.8e-33 144.8 85 77.6
AUR62008308 Chenopodium quinoa HOM05D001372 ORTHO05D007311 2.8e-33 144.8 83 75.9
AUR62008309 Chenopodium quinoa HOM05D001372 ORTHO05D007311 2.8e-33 144.8 83 75.9
Ciclev10030268m.g Citrus clementina HOM05D001372 ORTHO05D007311 2.8e-33 144.8 84 82.1
Glyma.12G048200 Glycine max HOM05D001372 ORTHO05D007311 2.8e-33 144.8 87 77.0
Manes.17G096600 Manihot esculenta HOM05D001372 ORTHO05D007311 2.8e-33 144.8 87 79.3
Medtr0311s0010 Medicago truncatula HOM05D001372 ORTHO05D007311 2.8e-33 144.8 82 80.5
Oeu010568.1 Olea europaea HOM05D001372 ORTHO05D007311 2.8e-33 144.8 81 81.5
THA.LOC104807341 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 2.8e-33 144.8 82 79.3
DCAR_022076 Daucus carota HOM05D001372 ORTHO05D007311 3.7e-33 144.4 84 79.8
Nitab4.5_0008194g0080 Nicotiana tabacum HOM05D001372 ORTHO05D007311 3.7e-33 144.4 75 85.3
Sed0000118 Sechium edule HOM05D001372 ORTHO05D007311 3.7e-33 144.4 86 77.9
THA.LOC104819597 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 3.7e-33 144.4 82 79.3
Atru.chr13.1402 Acer truncatum HOM05D001372 ORTHO05D007311 4.9e-33 144.1 84 81.0
AUR62025645 Chenopodium quinoa HOM05D001372 ORTHO05D007311 4.9e-33 144.1 83 75.9
Gohir.A12G030200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 4.9e-33 144.1 84 82.1
Phvul.011G050400 Phaseolus vulgaris HOM05D001372 ORTHO05D007311 4.9e-33 144.1 87 78.2
Sc14g0001710 Simmondsia chinensis HOM05D001372 ORTHO05D007311 4.9e-33 144.1 84 77.4
Ah.02g112890 Amaranthus hybridus HOM05D001372 ORTHO05D007311 6.3e-33 143.7 86 76.7
Ah.02g112920 Amaranthus hybridus HOM05D001372 ORTHO05D007311 6.3e-33 143.7 86 76.7
Carub.0003s2981 Capsella rubella HOM05D001372 ORTHO05D007311 6.3e-33 143.7 80 78.8
Ca_20817_v3 Cicer arietinum L. HOM05D001372 ORTHO05D007311 6.3e-33 143.7 87 78.2
HanXRQChr03g0074331 Helianthus annuus HOM05D001372 ORTHO05D007311 6.3e-33 143.7 84 82.1
BcaC01g03046 Brassica carinata HOM05D001372 ORTHO05D007311 8.3e-33 143.3 80 78.8
A07p04870 Brassica napus HOM05D001372 ORTHO05D007311 8.3e-33 143.3 82 79.3
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 8.3e-33 143.3 80 78.8
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 8.3e-33 143.3 80 78.8
Lj3g0024398 Lotus japonicus HOM05D001372 ORTHO05D007311 8.3e-33 143.3 87 75.9
Sp3g29230 Schrenkiella parvula HOM05D001372 ORTHO05D007311 8.3e-33 143.3 82 79.3
TPR.G10235 Trifolium pratense HOM05D001372 ORTHO05D007311 1.1e-32 142.9 84 78.6
EL10Ac5g10871 Beta vulgaris HOM05D001372 ORTHO05D007311 1.4e-32 142.5 80 78.8
Eucgr.F03329 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.4e-32 142.5 84 79.8
BcaB03g16342 Brassica carinata HOM05D001372 ORTHO05D007311 2.4e-32 141.7 82 78.0
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 3.1e-32 141.4 80 76.2
Migut.N01213 Erythranthe guttata HOM05D001372 ORTHO05D007311 3.1e-32 141.4 82 81.7
Potri.009G109100 Populus trichocarpa HOM05D001372 ORTHO05D007311 3.1e-32 141.4 86 76.7
Thecc.02G028600 Theobroma cacao HOM05D001372 ORTHO05D007311 3.1e-32 141.4 84 81.0
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 4.1e-32 141.0 77 80.5
BraA07t28279Z Brassica rapa HOM05D001372 ORTHO05D007311 4.1e-32 141.0 80 77.5
Oeu003708.1 Olea europaea HOM05D001372 ORTHO05D007311 4.1e-32 141.0 78 83.3
RcHm_v2.0_Chr6g0260771 Rosa chinensis HOM05D001372 ORTHO05D007311 4.1e-32 141.0 81 80.2
RcHm_v2.0_Chr6g0260171 Rosa chinensis HOM05D001372 ORTHO05D007311 5.4e-32 140.6 83 78.3
RcHm_v2.0_Chr6g0260511 Rosa chinensis HOM05D001372 ORTHO05D007311 5.4e-32 140.6 83 78.3
AL3G47750 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 7.0e-32 140.2 75 80.0
AT2G15910 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 7.0e-32 140.2 79 78.5
Gohir.A09G221800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 7.0e-32 140.2 84 81.0
Psat1g039160 Pisum sativum HOM05D001372 ORTHO05D007311 7.0e-32 140.2 87 74.7
BcaC06g36100 Brassica carinata HOM05D001372 ORTHO05D007311 9.2e-32 139.8 82 78.0
C07p07850 Brassica napus HOM05D001372 ORTHO05D007311 9.2e-32 139.8 82 78.0
Aa31LG8G13440 Aethionema arabicum HOM05D001372 ORTHO05D007311 1.2e-31 139.4 82 75.6
BolC7t41203H Brassica oleracea HOM05D001372 ORTHO05D007311 1.2e-31 139.4 81 77.8
COL.COLO4_17203 Corchorus olitorius HOM05D001372 ORTHO05D007311 1.2e-31 139.4 84 78.6
Ah.11g045560 Amaranthus hybridus HOM05D001372 ORTHO05D007311 1.6e-31 139.0 86 74.4
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 1.6e-31 139.0 75 81.3
arahy.Tifrunner.gnm1.ann1.FTA1AJ Arachis hypogaea HOM05D001372 ORTHO05D007311 2.0e-31 138.7 74 83.8
Nn2g15585 Nelumbo nucifera HOM05D001372 ORTHO05D007311 2.0e-31 138.7 86 76.7
PGR042G3549 Punica granatum HOM05D001372 ORTHO05D007311 2.0e-31 138.7 85 78.8
COL.COLO4_17775 Corchorus olitorius HOM05D001372 ORTHO05D007311 2.7e-31 138.3 84 78.6
FAN19G1239 Fragaria x ananassa HOM05D001372 ORTHO05D007311 3.5e-31 137.9 76 80.3
FAN26G1996 Fragaria x ananassa HOM05D001372 ORTHO05D007311 3.5e-31 137.9 82 75.6
FAN28G0653 Fragaria x ananassa HOM05D001372 ORTHO05D007311 3.5e-31 137.9 83 75.9
RcHm_v2.0_Chr6g0260501 Rosa chinensis HOM05D001372 ORTHO05D007311 3.5e-31 137.9 83 77.1
arahy.Tifrunner.gnm1.ann1.34YEZP Arachis hypogaea HOM05D001372 ORTHO05D007311 5.9e-31 137.1 72 84.7
BcaB08g34618 Brassica carinata HOM05D001372 ORTHO05D007311 5.9e-31 137.1 82 79.3
CDE07G0396 Ceratophyllum demersum HOM05D001372 ORTHO05D007311 5.9e-31 137.1 85 72.9
Eucgr.G00508 Eucalyptus grandis HOM05D001372 ORTHO05D007311 7.8e-31 136.7 83 75.9
Nitab4.5_0004946g0010 Nicotiana tabacum HOM05D001372 ORTHO05D007311 7.8e-31 136.7 66 92.4
FAN28G0897 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.0e-30 136.3 82 74.4
Nn7g36402 Nelumbo nucifera HOM05D001372 ORTHO05D007311 1.0e-30 136.3 86 76.7
HPP92_025391 Vanilla planifolia HOM05D001372 ORTHO05D007311 1.3e-30 136.0 83 77.1
ATR0807G173 Amborella trichopoda HOM05D001372 ORTHO05D007311 1.7e-30 135.6 83 73.5
CDE09G1189 Ceratophyllum demersum HOM05D001455 ORTHO05D001587 2.3e-30 135.2 85 72.9
Eucgr.G01534 Eucalyptus grandis HOM05D001372 ORTHO05D007311 2.3e-30 135.2 83 73.5
Sabra09G0083300 Salix brachista HOM05D001372 ORTHO05D007311 2.3e-30 135.2 86 70.9
Psat5g239440 Pisum sativum HOM05D001372 ORTHO05D007311 2.9e-30 134.8 66 87.9
Psat5g295360 Pisum sativum HOM05D001372 ORTHO05D007311 2.9e-30 134.8 66 87.9
Atru.chr5.2877 Acer truncatum HOM05D001372 ORTHO05D007311 1.1e-29 132.9 84 73.8
Pp3c17_11290 Physcomitrium patens HOM05D001372 ORTHO05D007311 4.3e-29 131.0 65 87.7
Psat2g085760 Pisum sativum HOM05D001372 ORTHO05D007311 5.6e-29 130.6 87 71.3
Gorai.006G245400 Gossypium raimondii HOM05D001372 ORTHO05D007311 7.3e-29 130.2 84 77.4
Zm00001eb389160 Zea mays HOM05D001372 ORTHO05D007311 2.1e-28 128.6 80 70.0
Gohir.A04G115800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.4e-27 125.9 74 81.1
AagrBONN_evm.TU.Sc2ySwM_344.4003 Anthoceros agrestis HOM05D001372 ORTHO05D007311 1.8e-27 125.6 83 71.1
Os06g0661600 Oryza sativa ssp. japonica HOM05D001372 ORTHO05D007311 3.0e-27 124.8 80 68.8
Mapoly0002s0208 Marchantia polymorpha HOM05D001372 ORTHO05D007311 5.2e-27 124.0 86 66.3
SHI05448 Sapria himalayana HOM05D001372 ORTHO05D007311 1.7e-25 119.0 74 68.9
Cre16.g653850 Chlamydomonas reinhardtii HOM05D001372 ORTHO05D007311 3.7e-25 117.9 62 80.6
Lsat_1_v5_gn_2_32760 Lactuca sativa HOM05D001372 ORTHO05D007311 8.3e-25 116.7 70 78.6
SMO111G0193 Selaginella moellendorffii HOM05D001372 ORTHO05D007311 1.4e-24 115.9 58 86.2
Nitab4.5_0001401g0190 Nicotiana tabacum HOM05D001372 ORTHO05D007311 2.4e-24 115.2 51 98.0
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 4.1e-24 114.4 54 90.7
HanXRQChr07g0193971 Helianthus annuus HOM05D001372 ORTHO05D007311 1.5e-21 105.9 60 73.3
Zm00001eb274880 Zea mays HOM05D001372 ORTHO05D007311 1.9e-21 105.5 54 79.6
MCO08G009 Micromonas commoda HOM05D001372 ORTHO05D007311 2.3e-19 98.6 60 63.3
RcHm_v2.0_Chr6g0259971 Rosa chinensis HOM05D001372 ORTHO05D007311 2.6e-18 95.1 61 72.1
Cc02_g18230 Coffea canephora HOM05D001372 ORTHO05D007311 1.6e-15 85.9 45 77.8
PRCOL_00006747 Prasinoderma coloniale HOM05D001372 ORTHO05D007311 6.0e-15 84.0 59 57.6


User provided reference genes

Program Settings