Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020018 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D022111 1.3e-51 206.1 99 100.0
CSS0007308 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D022111 4.8e-51 204.1 99 99.0
CSS0026771 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D022111 1.7e-48 195.7 99 94.9
CSS0033371 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.7e-48 195.7 99 94.9
Actinidia34394 Actinidia chinensis HOM05D003511 ORTHO05D004403 3.7e-43 177.9 93 87.1
Rhsim11G0156500 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.1e-42 176.4 92 89.1
Rhsim11G0158000 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.1e-42 176.4 92 89.1
vmacro01992 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 1.1e-42 176.4 93 88.2
Dinv42203 Davidia involucrata HOM05D003511 ORTHO05D004403 5.5e-39 164.1 93 81.7
TAR381G0671 Trochodendron aralioides HOM05D003511 ORTHO05D004403 9.5e-39 163.3 100 76.0
Rhsim10G0162400 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.6e-38 162.5 98 78.6
Duzib052G0193 Durio zibethinus HOM05D003511 ORTHO05D004403 2.1e-38 162.2 98 77.6
Duzib132G0449 Durio zibethinus HOM05D003511 ORTHO05D004403 3.6e-38 161.4 98 76.5
Oeu029532.2 Olea europaea HOM05D003511 ORTHO05D004403 8.0e-38 160.2 93 81.7
QL11p032729 Quercus lobata HOM05D003511 ORTHO05D004403 1.0e-37 159.8 93 79.6
Thecc.02G110900 Theobroma cacao HOM05D003511 ORTHO05D004403 1.8e-37 159.1 98 75.5
Cfa004603 Carpinus fangiana HOM05D003511 ORTHO05D004403 2.3e-37 158.7 96 76.0
Gorai.008G022200 Gossypium raimondii HOM05D003511 ORTHO05D004403 4.0e-37 157.9 98 74.5
TPR.G19062 Trifolium pratense HOM05D003511 ORTHO05D004403 6.8e-37 157.1 93 78.5
TPR.G19061 Trifolium pratense HOM05D003511 ORTHO05D004403 1.2e-36 156.4 93 79.6
Manes.10G075800 Manihot esculenta HOM05D003511 ORTHO05D004403 2.0e-36 155.6 97 73.2
FvH4_2g04810 Fragaria vesca HOM05D003511 ORTHO05D004403 5.7e-36 154.1 93 76.3
FAN20G1862 Fragaria x ananassa HOM05D003511 ORTHO05D004403 5.7e-36 154.1 93 76.3
Gohir.D12G021900 Gossypium hirsutum HOM05D003511 ORTHO05D004403 5.7e-36 154.1 93 76.3
RcHm_v2.0_Chr6g0254541 Rosa chinensis HOM05D003511 ORTHO05D004403 5.7e-36 154.1 93 75.3
CANSAT25G1711 Cannabis sativa HOM05D003511 ORTHO05D004403 7.5e-36 153.7 91 78.0
CiPaw.05G013100 Carya illinoinensis HOM05D003511 ORTHO05D004403 7.5e-36 153.7 93 78.5
Hma1.2p1_1518F.1_g288460 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 9.8e-36 153.3 93 75.3
Lj5C215T12 Lonicera japonica HOM05D003511 ORTHO05D004403 1.3e-35 152.9 93 77.4
FAN24G0829 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.7e-35 152.5 93 75.3
Lj5g0008514 Lotus japonicus HOM05D003511 ORTHO05D004403 1.7e-35 152.5 93 76.3
Ca_11061_v3 Cicer arietinum L. HOM05D003511 ORTHO05D004403 2.2e-35 152.1 93 76.3
FAN27G0709 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.2e-35 152.1 93 75.3
Sabra09G0072200 Salix brachista HOM05D003511 ORTHO05D004403 2.2e-35 152.1 96 74.0
Peaxi162Scf00016g02427 Petunia axillaris HOM05D003511 ORTHO05D004403 3.7e-35 151.4 93 76.3
Medtr1g107135 Medicago truncatula HOM05D003511 ORTHO05D004403 4.9e-35 151.0 93 74.2
Hma1.2p1_1518F.1_g288470 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 6.3e-35 150.6 93 73.1
Oeu013759.1 Olea europaea HOM05D003511 ORTHO05D004403 6.3e-35 150.6 101 71.3
vmacro02525 Vaccinium macrocarpon HOM05D003511 ORTHO05D022111 6.3e-35 150.6 99 71.7
FAN15G2851 Fragaria x ananassa HOM05D003511 ORTHO05D004403 8.3e-35 150.2 93 74.2
Gohir.A12G021400 Gossypium hirsutum HOM05D003511 ORTHO05D004403 8.3e-35 150.2 93 74.2
Haze_10199 Corylus avellana HOM05D003511 ORTHO05D004403 1.1e-34 149.8 88 78.4
Nitab4.5_0001480g0130 Nicotiana tabacum HOM05D003511 ORTHO05D004403 1.1e-34 149.8 93 75.3
GSVIVG01037900001 Vitis vinifera HOM05D003511 ORTHO05D004403 1.1e-34 149.8 93 73.1
Potri.009G093900 Populus trichocarpa HOM05D003511 ORTHO05D004403 1.8e-34 149.1 96 72.9
Atru.chr5.2456 Acer truncatum HOM05D003511 ORTHO05D004403 2.4e-34 148.7 93 73.1
Rhsim10G0162100 Rhododendron simsii HOM05D003511 ORTHO05D004403 3.1e-34 148.3 98 74.5
MD10G1099600 Malus domestica HOM05D003511 ORTHO05D022111 4.1e-34 147.9 90 74.4
Cfa004604 Carpinus fangiana HOM05D003511 ORTHO05D004403 5.4e-34 147.5 93 74.2
QL11p032687 Quercus lobata HOM05D003511 ORTHO05D004403 5.4e-34 147.5 93 71.0
TWI79G1106 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 7.0e-34 147.1 93 72.0
Glyma.20G130432 Glycine max HOM05D003511 ORTHO05D004403 9.2e-34 146.7 93 73.1
MD10G1099200 Malus domestica HOM05D003511 ORTHO05D004403 9.2e-34 146.7 90 73.3
Ciclev10027816m.g Citrus clementina HOM05D003511 ORTHO05D004403 1.2e-33 146.4 93 74.2
arahy.Tifrunner.gnm1.ann1.VN0KJM Arachis hypogaea HOM05D003511 ORTHO05D004403 1.6e-33 146.0 93 72.0
FvH4_2g04870 Fragaria vesca HOM05D003511 ORTHO05D004403 1.6e-33 146.0 93 69.9
Glyma.20G130366 Glycine max HOM05D003511 ORTHO05D004403 1.6e-33 146.0 93 72.0
Prupe.8G137300 Prunus persica HOM05D003511 ORTHO05D004403 2.0e-33 145.6 93 74.2
Glyma.10G260900 Glycine max HOM05D003511 ORTHO05D004403 2.7e-33 145.2 93 73.1
Potri.009G093500 Populus trichocarpa HOM05D003511 ORTHO05D004403 2.7e-33 145.2 94 70.2
FAN15G0970 Fragaria x ananassa HOM05D003511 ORTHO05D004403 4.5e-33 144.4 93 69.9
Nn5g30453 Nelumbo nucifera HOM05D003511 ORTHO05D004403 4.5e-33 144.4 96 70.8
Phvul.007G041400 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 4.5e-33 144.4 93 72.0
FAN24G2294 Fragaria x ananassa HOM05D003511 ORTHO05D004403 5.9e-33 144.1 93 68.8
CiPaw.05G013200 Carya illinoinensis HOM05D003511 ORTHO05D004403 7.8e-33 143.7 93 72.0
Lj5A215G58 Lonicera japonica HOM05D003511 ORTHO05D004403 7.8e-33 143.7 98 70.4
Nitab4.5_0003699g0020 Nicotiana tabacum HOM05D003511 ORTHO05D004403 1.0e-32 143.3 93 69.9
Thecc.02G111000 Theobroma cacao HOM05D003511 ORTHO05D004403 1.0e-32 143.3 95 71.6
Cpa.g.sc106.113 Carica papaya HOM05D003511 ORTHO05D004403 1.3e-32 142.9 93 71.0
DCAR_001655 Daucus carota HOM05D003511 ORTHO05D004403 1.3e-32 142.9 89 75.3
Aqoxy6G02835 Aquilegia oxysepala HOM05D003511 ORTHO05D004403 3.8e-32 141.4 98 66.3
MSTRG.20193 Avicennia marina HOM05D003511 ORTHO05D004403 5.0e-32 141.0 93 71.0
AUR62039057 Chenopodium quinoa HOM05D003511 ORTHO05D004403 6.6e-32 140.6 94 69.1
Hund06308 Selenicereus undatus HOM05D003511 ORTHO05D004403 6.6e-32 140.6 93 69.9
PGR142G1515 Punica granatum HOM05D003511 ORTHO05D004403 8.6e-32 140.2 95 67.4
AUR62010329 Chenopodium quinoa HOM05D003511 ORTHO05D004403 2.5e-31 138.7 94 68.1
Lalb_Chr06g0165351 Lupinus albus HOM05D003511 ORTHO05D004403 2.5e-31 138.7 95 68.4
arahy.Tifrunner.gnm1.ann1.LFSR1E Arachis hypogaea HOM05D003511 ORTHO05D004403 3.3e-31 138.3 87 72.4
Gorai.008G022000 Gossypium raimondii HOM05D003511 ORTHO05D004403 4.3e-31 137.9 96 66.7
Manes.10G075700 Manihot esculenta HOM05D003511 ORTHO05D004403 4.3e-31 137.9 93 71.0
EL10Ac9g22257 Beta vulgaris HOM05D003511 ORTHO05D004403 5.6e-31 137.5 94 69.1
PSO541G1166 Papaver somniferum HOM05D003511 ORTHO05D004403 5.6e-31 137.5 93 71.0
Eucgr.I01093 Eucalyptus grandis HOM05D003511 ORTHO05D004403 7.3e-31 137.1 93 68.8
Gohir.D12G021700 Gossypium hirsutum HOM05D003511 ORTHO05D004403 9.5e-31 136.7 96 66.7
Potri.001G299000 Populus trichocarpa HOM05D003511 ORTHO05D004403 9.5e-31 136.7 97 68.0
Sabra09G0072100 Salix brachista HOM05D003511 ORTHO05D004403 9.5e-31 136.7 94 63.8
Hund00157 Selenicereus undatus HOM05D003511 ORTHO05D004403 1.2e-30 136.3 94 68.1
MBI16_g09476_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 1.6e-30 136.0 90 68.9
CDE06G2550 Ceratophyllum demersum HOM05D003511 ORTHO05D004403 2.1e-30 135.6 92 65.2
TWI75G1477 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 2.8e-30 135.2 98 62.2
AUR62039058 Chenopodium quinoa HOM05D003511 ORTHO05D004403 3.6e-30 134.8 92 66.3
Lj5C215G13 Lonicera japonica HOM05D003511 ORTHO05D004403 3.6e-30 134.8 97 64.9
Atru.chr5.2454 Acer truncatum HOM05D003511 ORTHO05D004403 6.1e-30 134.0 82 75.6
CsaV3_3G018140 Cucumis sativus L. HOM05D003511 ORTHO05D004403 6.1e-30 134.0 93 67.7
ECA240G1815 Erigeron canadensis HOM05D003511 ORTHO05D004403 6.1e-30 134.0 102 63.7
Migut.B00398 Erythranthe guttata HOM05D003511 ORTHO05D004403 6.1e-30 134.0 95 65.3
Gohir.A12G021350 Gossypium hirsutum HOM05D003511 ORTHO05D004403 6.1e-30 134.0 96 64.6
Sabra16G0187500 Salix brachista HOM05D003511 ORTHO05D004403 8.0e-30 133.7 100 60.0
Sc08g0001330 Simmondsia chinensis HOM05D003511 ORTHO05D004403 1.4e-29 132.9 93 66.7
HanXRQChr09g0251071 Helianthus annuus HOM05D003511 ORTHO05D004403 5.2e-29 131.0 102 62.7
Peaxi162Scf00152g00326 Petunia axillaris HOM05D003511 ORTHO05D004403 5.2e-29 131.0 94 64.9
AUR62010328 Chenopodium quinoa HOM05D003511 ORTHO05D004403 8.9e-29 130.2 92 66.3
ClCG05G010350 Citrullus lanatus HOM05D003511 ORTHO05D004403 8.9e-29 130.2 93 66.7
Eucgr.I01091 Eucalyptus grandis HOM05D003511 ORTHO05D004403 8.9e-29 130.2 93 64.5
Cc02_g19400 Coffea canephora HOM05D003511 ORTHO05D004403 2.0e-28 129.0 93 62.4
Sed0017826 Sechium edule HOM05D003511 ORTHO05D004403 3.4e-28 128.3 93 67.7
COL.COLO4_32574 Corchorus olitorius HOM05D003511 ORTHO05D004403 9.8e-28 126.7 93 64.5
Eucgr.I01092 Eucalyptus grandis HOM05D003511 ORTHO05D004403 2.9e-27 125.2 93 65.6
Manes.07G068400 Manihot esculenta HOM05D003511 ORTHO05D004403 4.9e-27 124.4 93 60.2
Lsat_1_v5_gn_9_111920 Lactuca sativa HOM05D003511 ORTHO05D004403 6.4e-27 124.0 102 58.8
Atru.chr5.2453 Acer truncatum HOM05D003511 ORTHO05D004403 1.1e-26 123.2 90 63.3
Aa31LG2G16810 Aethionema arabicum HOM05D003511 ORTHO05D004403 1.8e-26 122.5 92 63.0
DCAR_001656 Daucus carota HOM05D003511 ORTHO05D004403 1.8e-26 122.5 95 62.1
SalBow6G6056 Salvia bowleyana HOM05D003511 ORTHO05D004403 2.4e-26 122.1 95 57.9
Ciclev10027838m.g Citrus clementina HOM05D003511 ORTHO05D004403 5.4e-26 120.9 95 57.9
Os10g0339600 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 5.4e-26 120.9 94 62.8
DCAR_029092 Daucus carota HOM05D003511 ORTHO05D004403 9.2e-26 120.2 90 60.0
BcaNung04164 Brassica carinata HOM05D003511 ORTHO05D004403 7.8e-25 117.1 92 60.9
ATR0205G005 Amborella trichopoda HOM05D003511 ORTHO05D004403 1.0e-24 116.7 96 60.4
ATR0661G369 Amborella trichopoda HOM05D003511 ORTHO05D004403 1.0e-24 116.7 96 58.3
HPP92_006064 Vanilla planifolia HOM05D003511 ORTHO05D004403 1.0e-24 116.7 89 58.4
Duzib248G0534 Durio zibethinus HOM05D003511 ORTHO05D004403 1.7e-24 115.9 60 85.0
Carub.0007s0611 Capsella rubella HOM05D003511 ORTHO05D004403 5.0e-24 114.4 92 58.7
Thhalv10024398m.g Eutrema salsugineum HOM05D003511 ORTHO05D004403 6.6e-24 114.0 92 58.7
Glyma.01G243600 Glycine max HOM05D003511 ORTHO05D004403 1.1e-23 113.2 96 56.2
AL7G17030 Arabidopsis lyrata HOM05D003511 ORTHO05D004403 1.5e-23 112.8 92 57.6
AT4G34260 Arabidopsis thaliana HOM05D003511 ORTHO05D004403 1.9e-23 112.5 92 57.6
A01p04170 Brassica napus HOM05D003511 ORTHO05D004403 1.9e-23 112.5 92 59.8
BraA01t00406Z Brassica rapa HOM05D003511 ORTHO05D004403 1.9e-23 112.5 92 59.8
Phvul.002G053000 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 1.9e-23 112.5 100 52.0
HanXRQChr10g0296941 Helianthus annuus HOM05D003511 ORTHO05D004403 2.5e-23 112.1 96 54.2
C01p04540 Brassica napus HOM05D003511 ORTHO05D004403 3.3e-23 111.7 92 59.8
BolC1t00439H Brassica oleracea HOM05D003511 ORTHO05D004403 3.3e-23 111.7 92 59.8
VMungo1215G0806 Vigna mungo HOM05D003511 ORTHO05D004403 3.3e-23 111.7 100 52.0
BcaNung04986 Brassica carinata HOM05D003511 ORTHO05D004403 5.6e-23 110.9 92 59.8
Lsat_1_v5_gn_5_116360 Lactuca sativa HOM05D003511 ORTHO05D004403 5.6e-23 110.9 99 51.5
CARHR242530 Cardamine hirsuta HOM05D003511 ORTHO05D004403 1.2e-22 109.8 92 56.5
Sp7g32040 Schrenkiella parvula HOM05D003511 ORTHO05D004403 1.2e-22 109.8 92 56.5
THA.LOC104819550 Tarenaya hassleriana HOM05D003511 ORTHO05D004403 1.2e-22 109.8 92 52.2
VMungo0720G0159 Vigna mungo HOM05D003511 ORTHO05D004403 1.2e-22 109.8 58 84.5
PGR142G0041 Punica granatum HOM05D003511 ORTHO05D004403 1.6e-22 109.4 93 59.1
SEGI_38974 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 3.1e-21 105.1 94 54.3
Lsat_1_v5_gn_5_116340 Lactuca sativa HOM05D003511 ORTHO05D004403 8.9e-21 103.6 98 48.0
Os10g0339290 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 2.0e-20 102.4 93 55.9
FAN24G3426 Fragaria x ananassa HOM05D003511 ORTHO05D022111 1.3e-19 99.8 70 64.3
COL.COLO4_32573 Corchorus olitorius HOM05D003511 ORTHO05D004403 3.7e-19 98.2 73 65.8
Atru.chr5.2448 Acer truncatum HOM05D003511 ORTHO05D004403 4.1e-18 94.7 51 80.4
Pp3c19_10350 Physcomitrium patens HOM05D003511 ORTHO05D004403 3.7e-11 71.6 98 42.9
ECA234G0109 Erigeron canadensis HOM05D003511 ORTHO05D004403 1.3e-08 63.2 37 73.0
Mapoly0115s0027 Marchantia polymorpha HOM05D003511 ORTHO05D004403 3.9e-08 61.6 88 40.9


User provided reference genes

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