Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 3.9e-34 147.5 72 100.0
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 3.9e-34 147.5 72 100.0
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 3.9e-34 147.5 72 100.0
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 3.9e-34 147.5 72 100.0
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 3.9e-34 147.5 72 100.0
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 3.9e-34 147.5 72 100.0
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 3.9e-34 147.5 72 100.0
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.2e-11 72.8 38 89.5
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 4.6e-11 70.9 37 89.2
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 7.9e-11 70.1 44 77.3
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 1.0e-10 69.7 49 67.3
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 1.0e-10 69.7 65 50.8
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 1.4e-10 69.3 46 73.9
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 1.8e-10 68.9 44 75.0
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 3.0e-10 68.2 50 66.0
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 3.0e-10 68.2 48 64.6
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 3.0e-10 68.2 38 78.9
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 3.9e-10 67.8 38 81.6
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 3.9e-10 67.8 39 79.5
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 5.1e-10 67.4 39 76.9
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 5.1e-10 67.4 46 69.6
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 5.1e-10 67.4 46 69.6
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 5.1e-10 67.4 46 69.6
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 5.1e-10 67.4 46 69.6
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 6.7e-10 67.0 50 64.0
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 6.7e-10 67.0 50 64.0
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 6.7e-10 67.0 37 78.4
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 6.7e-10 67.0 46 71.7
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 8.8e-10 66.6 50 64.0
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 8.8e-10 66.6 37 81.1
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 8.8e-10 66.6 37 81.1
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 8.8e-10 66.6 38 81.6
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 8.8e-10 66.6 38 81.6
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 8.8e-10 66.6 49 61.2
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 1.1e-09 66.2 38 81.6
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 1.5e-09 65.9 52 59.6
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 1.5e-09 65.9 52 59.6
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 1.5e-09 65.9 39 76.9
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 1.5e-09 65.9 49 59.2
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 1.5e-09 65.9 49 59.2
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 2.0e-09 65.5 49 61.2
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 2.0e-09 65.5 36 83.3
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 2.0e-09 65.5 49 63.3
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 2.0e-09 65.5 36 80.6
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 2.5e-09 65.1 52 63.5
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 2.5e-09 65.1 38 76.3
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 2.5e-09 65.1 46 67.4
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 3.3e-09 64.7 49 61.2
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 3.3e-09 64.7 46 65.2
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 3.3e-09 64.7 65 52.3
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 3.3e-09 64.7 34 82.4
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 4.3e-09 64.3 50 62.0
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 5.7e-09 63.9 49 59.2
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 5.7e-09 63.9 50 60.0
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 5.7e-09 63.9 56 57.1
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 5.7e-09 63.9 33 84.8
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 5.7e-09 63.9 33 84.8
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 7.4e-09 63.5 50 60.0
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 7.4e-09 63.5 36 75.0
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 7.4e-09 63.5 38 76.3
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 7.4e-09 63.5 38 71.1
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 7.4e-09 63.5 38 76.3
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 7.4e-09 63.5 67 49.3
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 9.7e-09 63.2 50 62.0
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 9.7e-09 63.2 38 76.3
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 1.3e-08 62.8 50 60.0
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.3e-08 62.8 34 82.4
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 1.3e-08 62.8 53 58.5
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 1.7e-08 62.4 69 46.4
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 2.2e-08 62.0 46 65.2
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 2.2e-08 62.0 46 65.2
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 2.2e-08 62.0 36 75.0
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.8e-08 61.6 33 81.8
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 2.8e-08 61.6 49 57.1
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 2.8e-08 61.6 65 49.2
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 3.7e-08 61.2 46 65.2
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 3.7e-08 61.2 46 60.9
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 3.7e-08 61.2 50 58.0
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 6.3e-08 60.5 38 71.1
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 6.3e-08 60.5 38 73.7
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 6.3e-08 60.5 38 65.8
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 8.2e-08 60.1 38 68.4
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 8.2e-08 60.1 50 58.0
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 8.2e-08 60.1 36 69.4
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 8.2e-08 60.1 36 66.7
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 1.1e-07 59.7 50 56.0
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 1.1e-07 59.7 67 49.3
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 1.1e-07 59.7 36 80.6
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 1.4e-07 59.3 46 60.9
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 1.8e-07 58.9 38 68.4
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 3.1e-07 58.2 36 69.4
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 4.1e-07 57.8 36 72.2
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 4.1e-07 57.8 65 43.1
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 1.5e-06 55.8 50 56.0
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 1.5e-06 55.8 46 56.5
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 7.7e-06 53.5 49 46.9


User provided reference genes

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