Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.1e-101 373.2 187 100.0
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.8e-75 286.2 164 87.2
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 1.7e-60 236.5 162 74.1
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 5.3e-59 231.5 164 70.1
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.3e-57 226.9 164 67.1
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 2.9e-57 225.7 164 67.7
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.6e-55 219.9 199 61.8
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 2.7e-55 219.2 158 69.0
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.7e-55 219.2 161 64.0
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.7e-55 218.4 163 63.2
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 6.1e-55 218.0 164 66.5
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 8.0e-55 217.6 161 63.4
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.4e-54 216.9 161 62.1
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 2.3e-54 216.1 157 66.2
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 8.8e-54 214.2 164 64.0
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 8.8e-54 214.2 161 62.7
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 1.2e-53 213.8 159 66.0
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 3.4e-53 212.2 152 68.4
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 4.4e-53 211.8 164 63.4
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 5.7e-53 211.5 159 67.3
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 5.7e-53 211.5 163 62.6
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 5.7e-53 211.5 161 61.5
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 9.8e-53 210.7 164 63.4
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.3e-52 210.3 159 66.7
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 1.7e-52 209.9 160 64.4
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.7e-52 209.9 157 65.0
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 2.2e-52 209.5 158 65.8
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 2.8e-52 209.1 161 61.5
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 3.7e-52 208.8 158 63.9
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 3.7e-52 208.8 160 64.4
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 4.8e-52 208.4 165 64.2
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 4.8e-52 208.4 155 66.5
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 6.3e-52 208.0 163 61.3
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 6.3e-52 208.0 172 62.2
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 1.1e-51 207.2 159 63.5
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.8e-51 206.5 136 70.6
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.8e-51 206.5 155 66.5
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.4e-51 206.1 146 65.8
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 3.1e-51 205.7 136 68.4
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 3.1e-51 205.7 158 63.3
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 4.1e-51 205.3 155 65.2
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 4.1e-51 205.3 165 62.4
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 4.1e-51 205.3 168 61.9
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 7.0e-51 204.5 165 60.6
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 9.1e-51 204.1 162 64.2
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.2e-50 203.8 161 62.1
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 1.6e-50 203.4 162 63.0
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 2.7e-50 202.6 159 61.6
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 2.7e-50 202.6 141 69.5
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 5.9e-50 201.4 162 63.0
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 7.7e-50 201.1 136 69.9
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 7.7e-50 201.1 160 63.8
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 1.3e-49 200.3 160 63.8
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 1.3e-49 200.3 174 59.2
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 1.7e-49 199.9 161 59.0
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.7e-49 199.9 156 63.5
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.7e-49 199.9 163 62.0
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 2.2e-49 199.5 160 63.1
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 2.9e-49 199.1 161 60.2
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 2.9e-49 199.1 161 60.2
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 6.5e-49 198.0 159 60.4
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 1.1e-48 197.2 173 60.1
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.5e-48 196.8 159 61.0
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 1.5e-48 196.8 166 59.6
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.9e-48 196.4 162 60.5
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 3.2e-48 195.7 178 57.3
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 4.2e-48 195.3 160 62.5
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 5.5e-48 194.9 162 58.6
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 9.4e-48 194.1 161 61.5
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 9.4e-48 194.1 140 63.6
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 2.1e-47 193.0 137 66.4
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 3.6e-47 192.2 154 63.0
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 4.7e-47 191.8 161 58.4
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 1.0e-46 190.7 133 67.7
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.0e-46 190.7 136 67.6
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 1.0e-46 190.7 140 62.1
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 3.0e-46 189.1 140 67.9
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 6.8e-46 188.0 137 65.0
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 8.8e-46 187.6 156 59.6
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 4.4e-45 185.3 159 59.1
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 5.7e-45 184.9 177 54.8
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 5.7e-45 184.9 242 47.5
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 7.5e-45 184.5 132 66.7
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 2.8e-44 182.6 158 58.2
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 8.3e-44 181.0 156 55.8
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 8.3e-44 181.0 137 61.3
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 5.4e-43 178.3 138 60.1
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 5.4e-43 178.3 163 54.6
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 9.1e-43 177.6 156 55.1
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 9.1e-43 177.6 136 56.6
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 1.2e-42 177.2 132 62.1
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.6e-42 176.8 164 54.3
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 2.7e-42 176.0 226 44.7
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 3.5e-42 175.6 137 59.1
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 4.5e-42 175.3 162 54.3
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 4.5e-42 175.3 162 54.3
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 5.9e-42 174.9 193 49.7
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 7.7e-42 174.5 162 54.3
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 7.7e-42 174.5 162 54.3
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 7.7e-42 174.5 156 53.8
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 1.0e-41 174.1 162 54.3
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.7e-41 173.3 157 56.7
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 1.7e-41 173.3 162 53.7
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 1.7e-41 173.3 162 53.7
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 1.7e-41 173.3 153 54.9
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 2.3e-41 172.9 164 53.0
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 2.3e-41 172.9 137 59.1
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 2.9e-41 172.6 164 53.0
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 2.9e-41 172.6 164 53.0
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 6.6e-41 171.4 133 60.9
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.1e-40 170.6 157 54.8
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.5e-40 170.2 157 54.8
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.3e-40 169.1 137 57.7
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 7.2e-40 167.9 155 54.2
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.2e-39 167.2 137 59.1
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.6e-39 166.8 147 58.5
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.8e-39 166.0 158 51.9
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 3.6e-39 165.6 155 52.3
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 3.6e-39 165.6 155 52.3
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 6.1e-39 164.9 155 52.3
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 8.0e-39 164.5 155 52.9
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 8.0e-39 164.5 155 52.3
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 1.0e-38 164.1 158 51.3
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.0e-38 164.1 147 52.4
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 5.2e-38 161.8 155 51.6
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 1.2e-37 160.6 142 56.3
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 4.4e-37 158.7 245 41.2
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 9.8e-37 157.5 149 57.7
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.7e-36 156.8 157 52.2
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 2.0e-34 149.8 139 53.2
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 6.6e-33 144.8 110 61.8
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 4.0e-30 135.6 115 58.3
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.0e-29 133.3 127 52.8
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 6.4e-28 128.3 111 55.0
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 8.3e-28 127.9 125 48.8
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 1.1e-27 127.5 125 49.6
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.9e-27 126.7 111 54.1
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 3.2e-27 125.9 110 55.5
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 4.1e-27 125.6 139 42.4
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-26 124.0 125 48.8
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 1.6e-26 123.6 130 48.5
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.0e-26 123.2 130 48.5
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 4.6e-26 122.1 112 54.5
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.0e-25 119.4 125 48.0
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.1e-24 117.5 125 47.2
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.9e-24 116.7 130 46.2
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 7.5e-21 104.8 130 43.1
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 3.7e-20 102.4 105 53.3
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 1.4e-19 100.5 88 53.4
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 2.4e-19 99.8 84 54.8
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 2.5e-16 89.7 121 41.3
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 3.6e-15 85.9 138 39.1
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.3e-14 83.2 89 49.4
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.3e-12 77.4 87 44.8
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.9e-11 73.6 128 33.6
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.4e-11 73.2 55 67.3
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 4.6e-10 68.9 76 44.7
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.9e-09 65.9 123 35.8
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 6.2e-07 58.5 43 62.8


User provided reference genes

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