Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 3.0e-146 521.9 283 100.0
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.9e-145 519.2 283 99.6
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 2.6e-118 429.1 296 80.7
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 1.3e-109 400.2 296 75.0
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 7.2e-108 394.4 296 73.6
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 9.4e-108 394.0 296 73.6
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 2.1e-107 392.9 284 77.5
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 6.1e-107 391.3 296 73.0
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 8.0e-107 391.0 296 72.3
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 3.0e-106 389.0 296 73.3
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 5.2e-106 388.3 297 74.1
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 2.0e-105 386.3 297 73.7
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.1e-103 380.6 296 73.0
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 3.1e-103 379.0 296 69.9
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 5.3e-103 378.3 320 69.7
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 1.6e-102 376.7 295 73.2
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.0e-101 374.0 296 69.3
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 1.3e-101 373.6 296 70.3
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.3e-101 373.6 297 70.4
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 3.8e-101 372.1 295 72.5
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.9e-100 369.8 296 72.0
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 2.1e-99 366.3 299 69.2
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 2.7e-99 365.9 296 70.6
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 6.1e-99 364.8 298 70.1
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 6.1e-99 364.8 296 69.9
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 1.0e-98 364.0 359 61.0
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 1.5e-97 360.1 298 70.1
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 2.0e-97 359.8 301 69.4
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.0e-97 359.8 331 64.7
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 4.4e-97 358.6 297 69.4
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 1.3e-96 357.1 296 68.6
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.3e-96 357.1 297 69.4
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 3.7e-96 355.5 298 67.8
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 3.7e-96 355.5 297 69.0
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 4.8e-96 355.1 298 67.8
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 6.3e-96 354.8 296 68.9
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 6.3e-96 354.8 296 68.6
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 8.3e-96 354.4 298 70.1
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.1e-95 354.0 298 67.4
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 1.4e-95 353.6 298 67.4
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 4.1e-95 352.1 298 67.8
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 4.1e-95 352.1 295 67.8
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 5.4e-95 351.7 297 69.4
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 5.4e-95 351.7 298 68.1
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.6e-94 350.1 264 73.9
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 2.0e-94 349.7 299 68.9
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 2.7e-94 349.4 296 68.6
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 5.9e-94 348.2 304 67.1
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 7.7e-94 347.8 304 65.8
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 2.9e-93 345.9 316 65.2
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 3.8e-93 345.5 299 64.9
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 8.6e-93 344.4 296 68.2
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 1.5e-92 343.6 296 66.9
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 3.3e-92 342.4 296 66.2
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 3.3e-92 342.4 300 65.3
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 4.2e-92 342.0 296 65.9
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 4.2e-92 342.0 297 65.7
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 4.2e-92 342.0 298 69.1
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 1.2e-91 340.5 296 66.2
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 1.2e-91 340.5 296 66.2
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 3.6e-91 339.0 327 62.4
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 6.1e-91 338.2 297 66.7
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 1.0e-90 337.4 302 64.9
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.0e-90 337.4 262 71.8
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 1.4e-90 337.0 298 64.8
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 1.4e-90 337.0 297 66.3
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 1.4e-90 337.0 297 66.3
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 4.4e-89 332.0 297 63.3
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 4.4e-89 332.0 296 66.9
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 4.4e-89 332.0 296 64.5
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 4.9e-88 328.6 297 63.6
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 8.3e-88 327.8 300 63.3
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 8.3e-88 327.8 296 63.9
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 2.4e-87 326.2 296 63.2
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 3.1e-87 325.9 295 64.7
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 3.1e-87 325.9 312 62.5
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 9.2e-87 324.3 303 64.0
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 9.2e-87 324.3 284 64.4
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 9.2e-87 324.3 265 70.6
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 8.6e-85 317.8 304 61.8
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 8.6e-85 317.8 296 62.8
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 1.1e-84 317.4 388 53.1
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 1.5e-84 317.0 296 63.2
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 5.6e-84 315.1 385 52.2
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 9.5e-84 314.3 269 66.5
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 6.1e-83 311.6 295 61.0
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 4.0e-82 308.9 295 60.7
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 2.0e-81 306.6 261 65.9
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 2.6e-81 306.2 296 60.8
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 3.4e-81 305.8 301 62.1
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 4.4e-81 305.4 297 60.6
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 4.4e-81 305.4 298 62.8
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 1.2e-78 297.4 254 66.1
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 1.2e-78 297.4 289 61.6
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 3.5e-78 295.8 375 52.3
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 1.5e-76 290.4 261 64.4
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 1.9e-76 290.0 261 64.8
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 3.3e-76 289.3 257 64.6
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 4.3e-76 288.9 297 58.2
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 6.2e-75 285.0 300 61.0
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.8e-74 283.5 230 69.6
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 1.5e-73 280.4 198 79.8
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 2.2e-72 276.6 298 59.4
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 2.8e-67 259.6 309 57.0
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 6.2e-67 258.5 301 55.1
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 6.8e-66 255.0 219 68.5
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 2.0e-65 253.4 298 55.4
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 4.1e-63 245.7 241 61.4
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 2.7e-62 243.0 265 54.7
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 1.5e-57 227.3 183 70.5
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 5.8e-57 225.3 166 75.9
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.7e-56 223.8 217 63.6
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 4.7e-51 205.7 170 69.4
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 4.0e-50 202.6 275 48.7
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 4.2e-47 192.6 243 45.7
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 5.4e-47 192.2 243 45.7
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 7.1e-47 191.8 184 64.1
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 1.6e-43 180.6 248 46.0
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.4e-42 177.6 121 74.4
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 2.4e-42 176.8 223 46.6
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 4.0e-42 176.0 151 68.2
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 9.3e-39 164.9 173 56.6
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 7.9e-38 161.8 180 57.2
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 1.3e-37 161.0 118 73.7
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 3.9e-37 159.5 245 39.2
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 3.7e-35 152.9 139 64.7
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 1.7e-32 144.1 244 44.7
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 3.3e-28 129.8 130 56.9
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 6.2e-27 125.6 231 37.7
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 2.4e-26 123.6 97 68.0
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 2.0e-25 120.6 121 56.2
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 1.3e-24 117.9 69 94.2
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 1.6e-22 110.9 166 44.6
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 6.7e-21 105.5 108 55.6
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 1.9e-20 104.0 108 54.6
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 3.7e-19 99.8 108 53.7
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 1.8e-13 80.9 62 67.7
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 7.7e-09 65.5 56 62.5
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 1.3e-08 64.7 49 67.3
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 1.3e-08 64.7 49 67.3
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 1.3e-08 64.7 49 67.3
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 4.2e-07 59.7 182 26.4
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 9.4e-07 58.5 220 30.9
Aa31LG8G9420 Aethionema arabicum HOM05D005102 ORTHO05D006090 3.6e-06 56.6 62 51.6


User provided reference genes

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