Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 8.1e-52 206.8 108 100.0
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 5.3e-19 97.8 89 69.7
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.5e-18 96.3 84 64.3
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.0e-17 93.6 79 65.8
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.3e-17 93.2 79 65.8
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 6.5e-17 90.9 85 64.7
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 4.2e-16 88.2 104 54.8
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 4.2e-16 88.2 94 60.6
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 5.5e-16 87.8 85 61.2
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 5.5e-16 87.8 81 61.7
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 7.2e-16 87.4 66 65.2
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 6.1e-15 84.3 74 59.5
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.4e-14 83.2 95 51.6
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 1.8e-14 82.8 82 56.1
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.3e-14 82.4 79 59.5
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.3e-14 82.4 85 56.5
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.0e-14 82.0 94 50.0
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 3.9e-14 81.6 74 63.5
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 5.2e-14 81.3 85 58.8
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 5.2e-14 81.3 77 58.4
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 5.2e-14 81.3 88 58.0
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 5.2e-14 81.3 74 63.5
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 6.7e-14 80.9 86 59.3
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 8.8e-14 80.5 82 54.9
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 8.8e-14 80.5 66 66.7
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 1.1e-13 80.1 76 57.9
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.5e-13 79.7 86 50.0
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 2.6e-13 79.0 88 50.0
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 2.6e-13 79.0 88 50.0
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 2.6e-13 79.0 68 64.7
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 2.6e-13 79.0 74 59.5
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 2.6e-13 79.0 78 61.5
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 3.3e-13 78.6 80 56.2
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 3.3e-13 78.6 93 50.5
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 4.4e-13 78.2 73 64.4
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 7.4e-13 77.4 69 62.3
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 7.4e-13 77.4 71 59.2
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.4e-13 77.4 88 54.5
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 9.7e-13 77.0 91 54.9
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.3e-12 76.6 81 58.0
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.3e-12 76.6 86 58.1
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 2.2e-12 75.9 62 64.5
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 2.2e-12 75.9 68 61.8
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 2.8e-12 75.5 74 60.8
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.8e-12 75.5 85 52.9
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.8e-12 75.5 88 53.4
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.8e-12 75.5 86 52.3
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 3.7e-12 75.1 74 59.5
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 3.7e-12 75.1 73 57.5
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 6.3e-12 74.3 68 61.8
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 6.3e-12 74.3 68 61.8
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 8.2e-12 73.9 67 59.7
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 8.2e-12 73.9 81 51.9
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 8.2e-12 73.9 67 64.2
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 1.1e-11 73.6 76 56.6
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 1.1e-11 73.6 79 55.7
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 1.1e-11 73.6 71 62.0
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.1e-11 73.6 72 56.9
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.4e-11 73.2 74 59.5
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.4e-11 73.2 74 59.5
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.4e-11 73.2 82 53.7
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.4e-11 73.2 88 47.7
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.8e-11 72.8 68 60.3
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 2.4e-11 72.4 80 52.5
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 2.4e-11 72.4 76 55.3
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 3.1e-11 72.0 82 52.4
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 3.1e-11 72.0 65 61.5
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 3.1e-11 72.0 74 55.4
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 4.1e-11 71.6 69 56.5
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 4.1e-11 71.6 66 60.6
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 5.3e-11 71.2 73 54.8
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 5.3e-11 71.2 82 50.0
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 5.3e-11 71.2 78 57.7
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 5.3e-11 71.2 78 57.7
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 5.3e-11 71.2 78 57.7
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 7.0e-11 70.9 61 60.7
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 7.0e-11 70.9 67 59.7
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 1.2e-10 70.1 79 53.2
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 1.2e-10 70.1 79 53.2
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 2.0e-10 69.3 60 61.7
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 2.6e-10 68.9 69 55.1
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 2.6e-10 68.9 69 56.5
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.6e-10 68.9 74 54.1
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 2.6e-10 68.9 83 49.4
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 3.5e-10 68.6 92 45.7
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 4.5e-10 68.2 61 63.9
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 4.5e-10 68.2 84 46.4
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 4.5e-10 68.2 72 50.0
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.5e-10 68.2 88 50.0
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 5.9e-10 67.8 83 48.2
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.9e-10 67.8 63 58.7
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.7e-10 67.4 82 51.2
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 7.7e-10 67.4 88 44.3
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 1.0e-09 67.0 81 50.6
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 1.0e-09 67.0 90 46.7
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 1.0e-09 67.0 66 60.6
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 1.0e-09 67.0 60 60.0
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 1.3e-09 66.6 58 55.2
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 1.3e-09 66.6 55 63.6
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 1.7e-09 66.2 61 57.4
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 1.7e-09 66.2 66 54.5
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.7e-09 66.2 71 50.7
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.7e-09 66.2 69 53.6
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 2.2e-09 65.9 77 51.9
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 2.2e-09 65.9 77 51.9
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 2.2e-09 65.9 76 51.3
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 2.2e-09 65.9 67 56.7
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 2.9e-09 65.5 81 48.1
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 2.9e-09 65.5 81 48.1
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 2.9e-09 65.5 81 48.1
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 2.9e-09 65.5 76 52.6
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 2.9e-09 65.5 69 59.4
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 3.8e-09 65.1 75 50.7
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 5.0e-09 64.7 82 45.1
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 5.0e-09 64.7 69 59.4
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 5.0e-09 64.7 69 59.4
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 5.0e-09 64.7 81 48.1
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 5.0e-09 64.7 69 50.7
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 5.0e-09 64.7 69 50.7
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 6.5e-09 64.3 67 55.2
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 6.5e-09 64.3 67 55.2
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 8.5e-09 63.9 67 55.2
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 8.5e-09 63.9 67 55.2
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 8.5e-09 63.9 88 47.7
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 8.5e-09 63.9 64 54.7
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 2.5e-08 62.4 67 53.7
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 2.5e-08 62.4 76 50.0
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 2.5e-08 62.4 76 50.0
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 2.5e-08 62.4 64 51.6
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.5e-08 62.4 82 45.1
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 2.5e-08 62.4 83 44.6
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 2.5e-08 62.4 55 61.8
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 3.2e-08 62.0 82 41.5
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 4.2e-08 61.6 55 61.8
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 7.2e-08 60.8 67 53.7
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 9.4e-08 60.5 65 49.2
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 1.2e-07 60.1 83 44.6
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 2.7e-07 58.9 85 41.2
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 4.7e-07 58.2 71 47.9
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 6.1e-07 57.8 57 59.6
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 6.1e-07 57.8 63 50.8
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.0e-06 57.0 59 54.2
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 1.4e-06 56.6 73 49.3
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 1.4e-06 56.6 76 43.4
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 1.8e-06 56.2 67 44.8
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.8e-06 56.2 67 53.7
HPP92_023456 Vanilla planifolia HOM05D004722 ORTHO05D005453 2.3e-06 55.8 76 43.4
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 4.0e-06 55.1 66 48.5
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 5.2e-06 54.7 63 50.8


User provided reference genes

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