Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.9e-67 258.5 131 100.0
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.0e-66 253.8 131 98.5
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.0e-64 247.7 131 95.4
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.0e-64 247.7 131 95.4
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.5e-39 166.4 128 71.1
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 9.3e-34 147.1 126 62.7
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 6.0e-33 144.4 128 57.0
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.7e-32 142.9 126 65.1
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 3.0e-32 142.1 125 59.2
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 8.7e-32 140.6 130 63.1
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 7.4e-31 137.5 122 60.7
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 9.6e-31 137.1 119 63.0
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 4.8e-30 134.8 127 60.6
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 4.8e-30 134.8 125 60.8
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 1.4e-29 133.3 122 59.8
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.8e-29 132.9 125 61.6
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 1.8e-29 132.9 125 60.0
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.0e-29 131.7 125 59.2
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.2e-28 130.2 125 58.4
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.4e-28 128.6 126 58.7
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 7.6e-28 127.5 126 58.7
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 7.6e-28 127.5 126 56.3
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 7.6e-28 127.5 125 58.4
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 1.3e-27 126.7 125 52.8
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.7e-27 126.3 125 52.8
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 2.2e-27 125.9 127 57.5
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 4.9e-27 124.8 125 56.8
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.1e-26 123.6 126 56.3
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 1.4e-26 123.2 123 54.5
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.9e-26 122.9 127 55.1
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.9e-26 122.9 123 57.7
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 2.4e-26 122.5 127 55.9
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 4.2e-26 121.7 128 58.6
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 6.0e-25 117.9 132 53.8
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 7.9e-25 117.5 132 55.3
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 1.0e-24 117.1 126 56.3
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.8e-24 116.3 127 52.8
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.3e-24 115.9 126 55.6
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 5.1e-24 114.8 121 56.2
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 5.1e-24 114.8 132 54.5
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 6.7e-24 114.4 96 65.6
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 8.7e-24 114.0 121 51.2
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 1.9e-23 112.8 129 54.3
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 3.3e-23 112.1 127 53.5
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 4.3e-23 111.7 128 53.1
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 9.6e-23 110.5 124 53.2
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 9.6e-23 110.5 122 54.1
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 1.6e-22 109.8 128 52.3
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 2.1e-22 109.4 116 53.4
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 2.8e-22 109.0 129 52.7
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 6.2e-22 107.8 123 50.4
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 6.2e-22 107.8 123 50.4
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 8.1e-22 107.5 124 51.6
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 8.1e-22 107.5 130 50.0
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 8.1e-22 107.5 129 51.2
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 8.1e-22 107.5 128 49.2
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.1e-21 107.1 121 52.1
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.1e-21 107.1 126 50.0
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 4.0e-21 105.1 127 51.2
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 5.3e-21 104.8 119 53.8
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.9e-21 104.4 127 54.3
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 6.9e-21 104.4 140 50.7
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 9.0e-21 104.0 132 48.5
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 9.0e-21 104.0 133 50.4
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.2e-20 103.6 131 47.3
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.2e-20 103.6 144 46.5
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 2.0e-20 102.8 137 50.4
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 2.0e-20 102.8 137 49.6
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 4.5e-20 101.7 123 48.0
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 5.8e-20 101.3 122 52.5
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 7.6e-20 100.9 123 48.0
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.0e-19 100.5 137 48.9
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.0e-19 100.5 120 47.5
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 1.3e-19 100.1 128 49.2
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 2.2e-19 99.4 117 47.9
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 2.2e-19 99.4 123 49.6
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 2.2e-19 99.4 123 49.6
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 2.2e-19 99.4 128 50.8
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.8e-19 98.6 117 49.6
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 4.9e-19 98.2 120 46.7
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 6.5e-19 97.8 125 50.4
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 6.5e-19 97.8 122 49.2
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 8.4e-19 97.4 116 49.1
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 8.4e-19 97.4 123 48.0
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 1.9e-18 96.3 123 48.8
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 2.5e-18 95.9 123 48.8
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 2.5e-18 95.9 123 48.8
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.2e-18 95.1 125 44.8
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 5.5e-18 94.7 117 47.9
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 7.1e-18 94.4 124 49.2
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 9.3e-18 94.0 106 54.7
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 1.2e-17 93.6 143 44.8
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 1.2e-17 93.6 126 47.6
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.6e-17 93.2 125 44.0
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 1.6e-17 93.2 132 44.7
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.1e-17 92.8 125 48.0
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.1e-17 92.8 125 48.0
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 3.5e-17 92.0 141 44.0
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 6.0e-17 91.3 127 46.5
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 7.9e-17 90.9 130 47.7
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 1.8e-16 89.7 126 46.8
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.3e-16 89.4 125 43.2
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 2.3e-16 89.4 135 47.4
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.0e-16 89.0 106 53.8
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 3.9e-16 88.6 124 47.6
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 3.9e-16 88.6 124 47.6
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 3.9e-16 88.6 124 47.6
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.9e-16 88.6 123 45.5
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 6.7e-16 87.8 140 46.4
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 6.7e-16 87.8 125 46.4
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.5e-15 86.7 124 44.4
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.9e-15 86.3 122 45.1
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.9e-15 86.3 122 45.1
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.9e-15 86.3 139 40.3
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.9e-15 86.3 122 45.1
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 2.5e-15 85.9 126 41.3
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 2.5e-15 85.9 124 43.5
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 2.5e-15 85.9 124 43.5
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.5e-15 85.9 124 43.5
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 3.3e-15 85.5 129 46.5
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 5.7e-15 84.7 120 47.5
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 9.6e-15 84.0 108 45.4
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 2.8e-14 82.4 126 42.9
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 3.7e-14 82.0 130 43.1
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 6.3e-14 81.3 125 43.2
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.3e-14 81.3 124 46.0
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.3e-14 81.3 124 46.0
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.3e-14 81.3 127 43.3
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 8.2e-14 80.9 121 47.9
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 1.4e-13 80.1 116 42.2
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 1.8e-13 79.7 146 39.7
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.8e-13 79.7 125 42.4
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 2.4e-13 79.3 128 40.6
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 5.3e-13 78.2 165 38.8
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 9.0e-13 77.4 136 39.7
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.2e-12 77.0 114 45.6
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 2.0e-12 76.3 117 45.3
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 2.0e-12 76.3 166 32.5
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 3.4e-12 75.5 114 39.5
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 3.4e-12 75.5 124 45.2
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.5e-12 75.1 115 42.6
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 7.6e-12 74.3 138 38.4
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 7.6e-12 74.3 85 47.1
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.0e-11 73.9 126 37.3
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.7e-11 73.2 129 37.2
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 1.7e-11 73.2 133 39.8
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 1.7e-11 73.2 118 43.2
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 2.9e-11 72.4 101 44.6
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 2.9e-11 72.4 101 44.6
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 5.0e-11 71.6 135 37.8
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 9.3e-10 67.4 152 38.2
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 2.7e-09 65.9 144 34.7
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 3.5e-09 65.5 124 43.5
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 4.6e-09 65.1 132 40.2
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.0e-08 63.9 118 38.1
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 2.3e-08 62.8 114 37.7
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 3.0e-08 62.4 127 37.8
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 2.5e-07 59.3 97 46.4
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 3.3e-07 58.9 39 69.2
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 4.3e-07 58.5 46 60.9
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.3e-06 57.0 119 35.3
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 1.6e-06 56.6 118 37.3
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.8e-06 55.8 94 35.1
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 3.7e-06 55.5 109 37.6
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 6.3e-06 54.7 108 36.1
Lalb_Chr08g0243531 Lupinus albus HOM05D021496 ORTHO05D022761 8.2e-06 54.3 121 31.4


User provided reference genes

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