Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019824 Camellia sinensis var. sinensis HOM05D001619 ORTHO05D001541 1.0e-69 266.5 131 100.0
Actinidia17072 Actinidia chinensis HOM05D001619 ORTHO05D001541 1.3e-35 153.3 104 72.1
vmacro21770 Vaccinium macrocarpon HOM05D001619 ORTHO05D001541 7.9e-33 144.1 105 68.6
Dinv31986 Davidia involucrata HOM05D001619 ORTHO05D001541 1.0e-32 143.7 104 66.3
Actinidia15521 Actinidia chinensis HOM05D001619 ORTHO05D001541 1.1e-31 140.2 104 67.3
CSS0022341 Camellia sinensis var. sinensis HOM05D001619 ORTHO05D001541 5.6e-31 137.9 111 64.9
Rhsim06G0003500 Rhododendron simsii HOM05D001619 ORTHO05D001541 7.6e-28 127.5 104 64.4
Lj4A5T44 Lonicera japonica HOM05D001619 ORTHO05D001541 1.3e-22 110.2 104 52.9
Oeu004547.1 Olea europaea HOM05D001619 ORTHO05D001541 1.1e-21 107.1 85 60.0
Nitab4.5_0001756g0070 Nicotiana tabacum HOM05D001619 ORTHO05D025938 1.5e-20 103.2 102 51.0
DCAR_016797 Daucus carota HOM05D001619 ORTHO05D001541 7.6e-20 100.9 107 49.5
Hma1.2p1_0489F.1_g164070 Hydrangea macrophylla HOM05D001619 ORTHO05D001541 2.2e-19 99.4 110 53.6
SalBow6G1245 Salvia bowleyana HOM05D001619 ORTHO05D001541 3.8e-19 98.6 88 53.4
Cc10_g13010 Coffea canephora HOM05D001619 ORTHO05D001541 4.9e-19 98.2 100 51.0
PGSC0003DMG402009997 Solanum tuberosum HOM05D001619 ORTHO05D001541 8.4e-19 97.4 102 50.0
CiPaw.07G133900 Carya illinoinensis HOM05D001619 ORTHO05D001541 3.2e-18 95.5 113 46.0
CAN.G1330.9 Capsicum annuum HOM05D001619 ORTHO05D001541 4.2e-18 95.1 103 49.5
Sopen04g036370 Solanum pennellii HOM05D001619 ORTHO05D001541 4.2e-18 95.1 102 49.0
DCAR_013941 Daucus carota HOM05D001619 ORTHO05D001541 7.1e-18 94.4 101 47.5
Solyc04g082740.4 Solanum lycopersicum HOM05D001619 ORTHO05D001541 1.2e-17 93.6 102 49.0
Oeu049863.1 Olea europaea HOM05D001619 ORTHO05D001541 6.0e-17 91.3 59 69.5
Lsat_1_v5_gn_8_27500 Lactuca sativa HOM05D001619 ORTHO05D001541 2.3e-16 89.4 101 49.5
QL02p015706 Quercus lobata HOM05D001619 ORTHO05D001541 3.9e-16 88.6 113 45.1
HanXRQChr08g0216181 Helianthus annuus HOM05D001619 ORTHO05D001541 5.1e-16 88.2 101 46.5
Peaxi162Scf00680g00633 Petunia axillaris HOM05D001619 ORTHO05D001541 1.1e-15 87.0 68 60.3
ECA233G5749 Erigeron canadensis HOM05D001619 ORTHO05D001541 1.9e-15 86.3 104 46.2
Migut.C00358 Erythranthe guttata HOM05D001619 ORTHO05D001541 4.3e-15 85.1 85 50.6
COL.COLO4_12314 Corchorus olitorius HOM05D001619 ORTHO05D001541 7.4e-15 84.3 67 62.7
Nn2g12623 Nelumbo nucifera HOM05D001619 ORTHO05D001541 7.4e-15 84.3 85 49.4
SGA_v2.0_scaffold220G42650 Striga asiatica HOM05D001619 ORTHO05D001541 7.4e-15 84.3 96 46.9
Nn8g40372 Nelumbo nucifera HOM05D001619 ORTHO05D001541 1.6e-14 83.2 69 56.5
Prupe.5G005900 Prunus persica HOM05D001619 ORTHO05D001541 1.6e-14 83.2 112 43.8
Glyma.15G047500 Glycine max HOM05D001619 ORTHO05D001541 1.4e-13 80.1 61 60.7
Ciclev10001358m.g Citrus clementina HOM05D001619 ORTHO05D001541 1.8e-13 79.7 61 63.9
MD06G1004600 Malus domestica HOM05D001619 ORTHO05D001541 1.8e-13 79.7 61 62.3
RcHm_v2.0_Chr7g0216621 Rosa chinensis HOM05D001619 ORTHO05D001541 4.1e-13 78.6 82 52.4
SGA_v2.0_scaffold227G43158 Striga asiatica HOM05D001619 ORTHO05D001541 5.3e-13 78.2 84 48.8
arahy.Tifrunner.gnm1.ann1.X04J1J Arachis hypogaea HOM05D001619 ORTHO05D001541 9.0e-13 77.4 61 62.3
Ca_01803_v3 Cicer arietinum L. HOM05D001619 ORTHO05D001541 9.0e-13 77.4 61 59.0
Ca_30470_v3 Cicer arietinum L. HOM05D001619 ORTHO05D001541 9.0e-13 77.4 61 59.0
TAR381G0513 Trochodendron aralioides HOM05D001619 ORTHO05D001541 9.0e-13 77.4 69 56.5
FvH4_5g26010 Fragaria vesca HOM05D001619 ORTHO05D001541 1.5e-12 76.6 82 50.0
FAN13G2253 Fragaria x ananassa HOM05D001619 ORTHO05D001541 1.5e-12 76.6 82 50.0
TPR.G32875 Trifolium pratense HOM05D001619 ORTHO05D001541 1.5e-12 76.6 61 60.7
arahy.Tifrunner.gnm1.ann1.7DN31D Arachis hypogaea HOM05D001619 ORTHO05D001541 2.0e-12 76.3 61 62.3
FAN08G3113 Fragaria x ananassa HOM05D001619 ORTHO05D001541 2.0e-12 76.3 81 49.4
Atru.chr13.66 Acer truncatum HOM05D001619 ORTHO05D001541 3.4e-12 75.5 69 55.1
Psat5g246760 Pisum sativum HOM05D001619 ORTHO05D001541 5.9e-12 74.7 61 57.4
VMungo0540G2057 Vigna mungo HOM05D001619 ORTHO05D001541 5.9e-12 74.7 68 54.4
MBI01_g17252_MAGBIO Magnolia biondii HOM05D001619 ORTHO05D001541 1.0e-11 73.9 74 51.4
Glyma.08G185200 Glycine max HOM05D001619 ORTHO05D001541 1.3e-11 73.6 61 55.7
FAN04G3031 Fragaria x ananassa HOM05D001619 ORTHO05D001541 1.7e-11 73.2 83 48.2
Lalb_Chr15g0090631 Lupinus albus HOM05D001619 ORTHO05D001541 2.2e-11 72.8 59 59.3
Lj6g0027296 Lotus japonicus HOM05D001619 ORTHO05D001541 3.8e-11 72.0 63 61.9
Potri.002G005400 Populus trichocarpa HOM05D001619 ORTHO05D001541 3.8e-11 72.0 75 50.7
Medtr2g081050 Medicago truncatula HOM05D001619 ORTHO05D001541 6.5e-11 71.2 61 55.7
Medtr2g007290 Medicago truncatula HOM05D001619 ORTHO05D001541 8.4e-11 70.9 60 55.0
Sabra11G0071400 Salix brachista HOM05D001619 ORTHO05D001541 8.4e-11 70.9 75 48.0
Aa31LG7G5030 Aethionema arabicum HOM05D001619 ORTHO05D001541 1.1e-10 70.5 62 54.8
CANSAT78G1558 Cannabis sativa HOM05D001619 ORTHO05D001541 1.1e-10 70.5 120 37.5
Cpa.g.sc286.13 Carica papaya HOM05D001619 ORTHO05D001541 1.4e-10 70.1 108 38.9
Phvul.006G213300 Phaseolus vulgaris HOM05D001619 ORTHO05D001541 2.5e-10 69.3 61 55.7
Sabra02G0003800 Salix brachista HOM05D001619 ORTHO05D001541 2.5e-10 69.3 75 48.0
Carub.0001s2034 Capsella rubella HOM05D001619 ORTHO05D001541 3.2e-10 68.9 63 58.7
Sp1g18570 Schrenkiella parvula HOM05D001619 ORTHO05D001541 9.3e-10 67.4 57 54.4
MELO3C026520.2 Cucumis melo HOM05D001619 ORTHO05D001541 1.2e-09 67.0 50 66.0
CsaV3_6G031340 Cucumis sativus L. HOM05D001619 ORTHO05D001541 1.2e-09 67.0 50 66.0
GSVIVG01013423001 Vitis vinifera HOM05D001619 ORTHO05D001541 2.1e-09 66.2 63 58.7
ClCG08G009210 Citrullus lanatus HOM05D001619 ORTHO05D001541 2.7e-09 65.9 48 66.7
Sed0004718 Sechium edule HOM05D001619 ORTHO05D001541 7.9e-09 64.3 52 61.5
CDE06G0475 Ceratophyllum demersum HOM05D001619 ORTHO05D001541 1.3e-08 63.5 64 51.6
ATR0605G226 Amborella trichopoda HOM05D001619 ORTHO05D001541 1.8e-08 63.2 60 56.7
CiPaw.07G134000 Carya illinoinensis HOM05D001619 ORTHO05D001541 1.8e-08 63.2 49 65.3
TWI12G0029 Tripterygium wilfordii HOM05D001619 ORTHO05D001541 1.8e-08 63.2 112 33.9
AL1G33890 Arabidopsis lyrata HOM05D001619 ORTHO05D001541 2.3e-08 62.8 58 55.2
EL10Ac1g01875 Beta vulgaris HOM05D001619 ORTHO05D001541 2.3e-08 62.8 41 75.6
CDE08G0732 Ceratophyllum demersum HOM05D001619 ORTHO05D001541 2.3e-08 62.8 64 50.0
SMO228G0014 Selaginella moellendorffii HOM05D001619 ORTHO05D001541 2.3e-08 62.8 76 48.7
SEGI_32397 Sequoiadendron giganteum HOM05D001619 ORTHO05D001541 2.3e-08 62.8 70 48.6
Ah.01g024700 Amaranthus hybridus HOM05D001619 ORTHO05D001541 3.0e-08 62.4 45 66.7
Thhalv10007660m.g Eutrema salsugineum HOM05D001619 ORTHO05D001541 3.0e-08 62.4 47 59.6
Manes.05G127400 Manihot esculenta HOM05D001619 ORTHO05D001541 3.0e-08 62.4 63 50.8
Hund05726 Selenicereus undatus HOM05D001619 ORTHO05D001541 3.0e-08 62.4 45 71.1
CANSAT25G1622 Cannabis sativa HOM05D001619 ORTHO05D001541 5.1e-08 61.6 47 61.7
AUR62024098 Chenopodium quinoa HOM05D001619 ORTHO05D001541 6.7e-08 61.2 51 58.8
CARHR021300 Cardamine hirsuta HOM05D001619 ORTHO05D001541 8.7e-08 60.8 47 61.7
QL02p015688 Quercus lobata HOM05D001619 ORTHO05D001541 8.7e-08 60.8 52 57.7
THA.LOC104812004 Tarenaya hassleriana HOM05D001619 ORTHO05D001541 1.5e-07 60.1 56 57.1
AT1G20870 Arabidopsis thaliana HOM05D001619 ORTHO05D001541 1.9e-07 59.7 58 53.4
Carub.0002s0858 Capsella rubella HOM05D001619 ORTHO05D001541 2.5e-07 59.3 68 47.1
AUR62035168 Chenopodium quinoa HOM05D001619 ORTHO05D001541 3.3e-07 58.9 40 70.0
Haze_22858 Corylus avellana HOM05D001619 ORTHO05D001541 3.3e-07 58.9 48 62.5
Manes.18G001156 Manihot esculenta HOM05D001619 ORTHO05D001541 3.3e-07 58.9 43 60.5
Sabra16G0147500 Salix brachista HOM05D001619 ORTHO05D001541 3.3e-07 58.9 50 52.0
AagrBONN_evm.TU.Sc2ySwM_117.3277 Anthoceros agrestis HOM05D001619 ORTHO05D001541 4.3e-07 58.5 83 44.6
BcaC05g25994 Brassica carinata HOM05D001619 ORTHO05D001541 5.7e-07 58.2 53 52.8
BolC5t30649H Brassica oleracea HOM05D001619 ORTHO05D001541 5.7e-07 58.2 53 52.8
Cfa014133 Carpinus fangiana HOM05D001619 ORTHO05D001541 5.7e-07 58.2 48 62.5
CsaV3_2G005110 Cucumis sativus L. HOM05D001619 ORTHO05D001541 5.7e-07 58.2 89 40.4
Lj4A5T45 Lonicera japonica HOM05D001619 ORTHO05D001541 5.7e-07 58.2 48 58.3
MBI19_g17596_MAGBIO Magnolia biondii HOM05D001619 ORTHO05D001541 5.7e-07 58.2 66 45.5
Pp3c18_5240 Physcomitrium patens HOM05D001619 ORTHO05D001541 5.7e-07 58.2 68 45.6
Sed0002667 Sechium edule HOM05D001619 ORTHO05D001541 5.7e-07 58.2 65 50.8
FAN08G3015 Fragaria x ananassa HOM05D002052 ORTHO05D001541 7.4e-07 57.8 76 44.7
Mapoly0074s0062 Marchantia polymorpha HOM05D001619 ORTHO05D001541 7.4e-07 57.8 66 48.5
RcHm_v2.0_Chr4g0409731 Rosa chinensis HOM05D001619 ORTHO05D001541 7.4e-07 57.8 47 57.4
Sc02g0009270 Simmondsia chinensis HOM05D001619 ORTHO05D001541 7.4e-07 57.8 42 66.7
CDE04G1786 Ceratophyllum demersum HOM05D001619 ORTHO05D001541 9.7e-07 57.4 66 45.5
Hma1.2p1_0489F.1_g164050 Hydrangea macrophylla HOM05D001619 ORTHO05D001541 9.7e-07 57.4 45 60.0
Hma1.2p1_0489F.1_g164060 Hydrangea macrophylla HOM05D001619 ORTHO05D001541 9.7e-07 57.4 45 60.0
Hma1.2p1_0612F.1_g189085 Hydrangea macrophylla HOM05D001619 ORTHO05D001541 9.7e-07 57.4 45 60.0
Potri.001G243100 Populus trichocarpa HOM05D001619 ORTHO05D001541 1.3e-06 57.0 50 52.0
C01p34580 Brassica napus HOM05D001619 ORTHO05D001541 1.6e-06 56.6 95 36.8
BolC1t03429H Brassica oleracea HOM05D001619 ORTHO05D001541 1.6e-06 56.6 95 36.8
Dinv31985 Davidia involucrata HOM05D001619 ORTHO05D001541 2.2e-06 56.2 43 67.4
Thhalv10023692m.g Eutrema salsugineum HOM05D001619 ORTHO05D001541 2.2e-06 56.2 95 35.8
FvH4_5g25970 Fragaria vesca HOM05D001619 ORTHO05D001541 2.2e-06 56.2 47 55.3
FAN08G3639 Fragaria x ananassa HOM05D001619 ORTHO05D001541 2.2e-06 56.2 47 55.3
FAN13G0416 Fragaria x ananassa HOM05D001619 ORTHO05D001541 2.2e-06 56.2 47 55.3
FAN18G2928 Fragaria x ananassa HOM05D001619 ORTHO05D001541 2.2e-06 56.2 47 55.3
THA.LOC104805867 Tarenaya hassleriana HOM05D001619 ORTHO05D001541 2.2e-06 56.2 67 46.3
A01p27180 Brassica napus HOM05D001619 ORTHO05D001541 2.8e-06 55.8 95 36.8
BraA01t02857Z Brassica rapa HOM05D001619 ORTHO05D001541 2.8e-06 55.8 95 36.8
Dinv05500 Davidia involucrata HOM05D001619 ORTHO05D001541 2.8e-06 55.8 52 59.6
PGR031G3550 Punica granatum HOM05D001619 ORTHO05D001541 2.8e-06 55.8 45 55.6
Sed0014050 Sechium edule HOM05D001619 ORTHO05D001541 2.8e-06 55.8 64 48.4
ClCG02G015940 Citrullus lanatus HOM05D001619 ORTHO05D001541 3.7e-06 55.5 65 49.2
Potri.013G024750 Populus trichocarpa HOM05D001619 ORTHO05D001541 3.7e-06 55.5 45 62.2
SpUn0002_0630 Schrenkiella parvula HOM05D001619 ORTHO05D001541 3.7e-06 55.5 95 35.8
Haze_04219 Corylus avellana HOM05D001619 ORTHO05D001541 4.8e-06 55.1 66 43.9
FAN13G2707 Fragaria x ananassa HOM05D001619 ORTHO05D001541 4.8e-06 55.1 47 53.2
FAN18G2903 Fragaria x ananassa HOM05D001619 ORTHO05D001541 4.8e-06 55.1 47 53.2
MBI17_g10950_MAGBIO Magnolia biondii HOM05D001619 ORTHO05D001541 4.8e-06 55.1 66 43.9
MBI17_g40297_MAGBIO Magnolia biondii HOM05D001619 ORTHO05D001541 4.8e-06 55.1 66 43.9
THA.LOC104809894 Tarenaya hassleriana HOM05D001619 ORTHO05D001541 4.8e-06 55.1 44 56.8
vmacro19632 Vaccinium macrocarpon HOM05D001619 ORTHO05D001541 4.8e-06 55.1 65 44.6
C05p19470 Brassica napus HOM05D001619 ORTHO05D001541 6.3e-06 54.7 42 64.3
MELO3C004283.2 Cucumis melo HOM05D001619 ORTHO05D001541 6.3e-06 54.7 65 49.2
Eucgr.I00285 Eucalyptus grandis HOM05D001619 ORTHO05D001541 6.3e-06 54.7 48 56.2
Rhsim06G0003600 Rhododendron simsii HOM05D001619 ORTHO05D001541 6.3e-06 54.7 49 55.1
AL1G65310 Arabidopsis lyrata HOM05D001619 ORTHO05D001541 8.2e-06 54.3 68 42.6
Cpa.g.sc286.14 Carica papaya HOM05D001619 ORTHO05D001541 8.2e-06 54.3 43 62.8
Cc02_g33620 Coffea canephora HOM05D001619 ORTHO05D001541 8.2e-06 54.3 65 44.6
Migut.B01058 Erythranthe guttata HOM05D001619 ORTHO05D001541 8.2e-06 54.3 99 35.4


User provided reference genes

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