Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019814 Camellia sinensis var. sinensis HOM05D001607 ORTHO05D001893 8.1e-102 373.6 174 100.0
CSS0006931 Camellia sinensis var. sinensis HOM05D001607 ORTHO05D001893 5.5e-50 201.4 126 79.4
Rhsim03G0187200 Rhododendron simsii HOM05D001607 ORTHO05D001893 1.3e-43 180.3 126 70.6
GSVIVG01028929001 Vitis vinifera HOM05D001607 ORTHO05D001893 4.2e-42 175.3 126 65.1
Lj1A999G29 Lonicera japonica HOM05D001607 ORTHO05D001893 7.2e-42 174.5 126 66.7
Dinv28425 Davidia involucrata HOM05D001607 ORTHO05D001893 9.4e-42 174.1 126 67.5
Actinidia34121 Actinidia chinensis HOM05D001607 ORTHO05D001893 6.1e-41 171.4 126 66.7
vmacro06666 Vaccinium macrocarpon HOM05D001607 ORTHO05D001893 5.2e-40 168.3 136 61.8
Actinidia25880 Actinidia chinensis HOM05D001607 ORTHO05D001893 1.2e-39 167.2 126 64.3
Duzib068G0651 Durio zibethinus HOM05D001607 ORTHO05D001893 3.3e-39 165.6 143 59.4
Migut.F00330 Erythranthe guttata HOM05D001607 ORTHO05D001893 5.7e-39 164.9 152 53.9
FAN10G2541 Fragaria x ananassa HOM05D001607 ORTHO05D001893 1.3e-38 163.7 134 59.0
CiPaw.03G107800 Carya illinoinensis HOM05D001607 ORTHO05D001893 1.7e-38 163.3 126 64.3
Prupe.2G295900 Prunus persica HOM05D001607 ORTHO05D001893 2.2e-38 162.9 136 61.0
CiPaw.04G071800 Carya illinoinensis HOM05D001607 ORTHO05D001893 2.8e-38 162.5 126 63.5
Cfa022712 Carpinus fangiana HOM05D001607 ORTHO05D001893 4.8e-38 161.8 136 59.6
FvH4_7g29630 Fragaria vesca HOM05D001607 ORTHO05D001893 4.8e-38 161.8 136 58.8
FAN10G1529 Fragaria x ananassa HOM05D001607 ORTHO05D001893 4.8e-38 161.8 134 58.2
FAN03G1039 Fragaria x ananassa HOM05D001607 ORTHO05D001893 6.3e-38 161.4 136 58.1
FAN03G1056 Fragaria x ananassa HOM05D001607 ORTHO05D001893 6.3e-38 161.4 136 58.1
FAN01G0648 Fragaria x ananassa HOM05D001607 ORTHO05D001893 8.2e-38 161.0 136 58.1
MD01G1203100 Malus domestica HOM05D001607 ORTHO05D001893 8.2e-38 161.0 136 59.6
TWI39G1280 Tripterygium wilfordii HOM05D001607 ORTHO05D001893 8.2e-38 161.0 136 59.6
Cpa.g.sc107.64 Carica papaya HOM05D001607 ORTHO05D001893 1.4e-37 160.2 126 62.7
Potri.012G142200 Populus trichocarpa HOM05D001607 ORTHO05D001893 1.4e-37 160.2 126 62.7
DCAR_001509 Daucus carota HOM05D001607 ORTHO05D001893 1.8e-37 159.8 126 60.3
TAR375G0166 Trochodendron aralioides HOM05D001607 ORTHO05D001893 1.8e-37 159.8 136 58.8
Sabra12G0106800 Salix brachista HOM05D001607 ORTHO05D001893 3.1e-37 159.1 126 61.9
FAN06G1924 Fragaria x ananassa HOM05D001607 ORTHO05D001893 4.1e-37 158.7 136 58.1
FAN06G4239 Fragaria x ananassa HOM05D001607 ORTHO05D001893 4.1e-37 158.7 136 58.1
Haze_13673 Corylus avellana HOM05D001607 ORTHO05D001893 5.3e-37 158.3 134 59.7
Potri.015G145300 Populus trichocarpa HOM05D001607 ORTHO05D001893 5.3e-37 158.3 126 61.9
ECA233G5223 Erigeron canadensis HOM05D001607 ORTHO05D001893 7.0e-37 157.9 126 60.3
MD07G1272600 Malus domestica HOM05D001607 ORTHO05D001893 7.0e-37 157.9 136 58.1
Manes.06G148500 Manihot esculenta HOM05D001607 ORTHO05D001893 7.0e-37 157.9 136 58.8
Hund04758 Selenicereus undatus HOM05D001607 ORTHO05D001893 9.1e-37 157.5 136 57.4
Ciclev10004167m.g Citrus clementina HOM05D001607 ORTHO05D001893 1.6e-36 156.8 126 61.9
MELO3C005470.2 Cucumis melo HOM05D001607 ORTHO05D001893 1.6e-36 156.8 136 56.6
Duzib205G1855 Durio zibethinus HOM05D001607 ORTHO05D001893 1.6e-36 156.8 126 61.1
CANSAT21G1423 Cannabis sativa HOM05D001607 ORTHO05D001893 2.0e-36 156.4 136 55.9
COL.COLO4_14332 Corchorus olitorius HOM05D001607 ORTHO05D001893 2.0e-36 156.4 126 61.9
Gorai.007G011200 Gossypium raimondii HOM05D001607 ORTHO05D001893 2.0e-36 156.4 126 60.3
Sopen03g004440 Solanum pennellii HOM05D001607 ORTHO05D001893 2.7e-36 156.0 126 58.7
CsaV3_5G004660 Cucumis sativus L. HOM05D001607 ORTHO05D001893 3.5e-36 155.6 136 55.9
Sopen03g004450 Solanum pennellii HOM05D001607 ORTHO05D001893 3.5e-36 155.6 126 57.9
Gohir.D11G009700 Gossypium hirsutum HOM05D001607 ORTHO05D001893 4.5e-36 155.2 126 60.3
RcHm_v2.0_Chr1g0377641 Rosa chinensis HOM05D001607 ORTHO05D001893 4.5e-36 155.2 136 57.4
Sc25g0000580 Simmondsia chinensis HOM05D001607 ORTHO05D001893 4.5e-36 155.2 126 58.7
Nitab4.5_0001842g0120 Nicotiana tabacum HOM05D001607 ORTHO05D001893 5.9e-36 154.8 126 60.3
Gohir.A11G010500 Gossypium hirsutum HOM05D001607 ORTHO05D001893 1.0e-35 154.1 126 59.5
Thecc.03G178600 Theobroma cacao HOM05D001607 ORTHO05D001893 1.0e-35 154.1 126 61.1
SGA_v2.0_scaffold44G16733 Striga asiatica HOM05D001607 ORTHO05D001893 1.7e-35 153.3 136 53.7
AUR62021171 Chenopodium quinoa HOM05D001607 ORTHO05D001893 2.2e-35 152.9 126 59.5
Ca_10751_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 2.2e-35 152.9 126 61.1
Lj2g0000053 Lotus japonicus HOM05D001607 ORTHO05D001893 2.2e-35 152.9 126 57.1
AUR62015965 Chenopodium quinoa HOM05D001607 ORTHO05D001893 3.8e-35 152.1 126 58.7
Lsat_1_v5_gn_8_8420 Lactuca sativa HOM05D001607 ORTHO05D001893 5.0e-35 151.8 128 58.6
Eucgr.A02778 Eucalyptus grandis HOM05D001607 ORTHO05D001893 6.5e-35 151.4 130 55.4
Gohir.A08G099300 Gossypium hirsutum HOM05D001607 ORTHO05D001893 6.5e-35 151.4 126 57.1
HanXRQChr10g0304171 Helianthus annuus HOM05D001607 ORTHO05D001893 6.5e-35 151.4 126 59.5
Gorai.004G118300 Gossypium raimondii HOM05D001607 ORTHO05D001893 8.5e-35 151.0 126 57.1
Eucgr.A02780 Eucalyptus grandis HOM05D001607 ORTHO05D001893 1.1e-34 150.6 130 55.4
Gohir.D08G110716 Gossypium hirsutum HOM05D001607 ORTHO05D001893 1.1e-34 150.6 126 57.1
Lalb_Chr19g0130771 Lupinus albus HOM05D001607 ORTHO05D001893 1.1e-34 150.6 136 54.4
Medtr1g101030 Medicago truncatula HOM05D001607 ORTHO05D001893 1.1e-34 150.6 126 59.5
Nitab4.5_0005845g0050 Nicotiana tabacum HOM05D001607 ORTHO05D001893 1.1e-34 150.6 125 59.2
Sed0028131 Sechium edule HOM05D001607 ORTHO05D001893 1.1e-34 150.6 136 52.9
Glyma.10G234500 Glycine max HOM05D001607 ORTHO05D001893 1.9e-34 149.8 126 57.9
PGR042G0514 Punica granatum HOM05D001607 ORTHO05D001893 1.9e-34 149.8 126 58.7
Nn1g01507 Nelumbo nucifera HOM05D001607 ORTHO05D001893 2.5e-34 149.4 136 52.9
arahy.Tifrunner.gnm1.ann1.CMMP9X Arachis hypogaea HOM05D001607 ORTHO05D001893 1.6e-33 146.7 124 55.6
arahy.Tifrunner.gnm1.ann1.GK85WT Arachis hypogaea HOM05D001607 ORTHO05D001893 1.6e-33 146.7 124 55.6
Phvul.007G071600 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 1.6e-33 146.7 128 56.2
Medtr0025s0060 Medicago truncatula HOM05D001607 ORTHO05D001893 2.1e-33 146.4 126 54.8
TPR.G26981 Trifolium pratense HOM05D001607 ORTHO05D001893 2.1e-33 146.4 126 57.9
PSO782G3230 Papaver somniferum HOM05D001607 ORTHO05D001893 2.7e-33 146.0 136 50.7
Atru.chr1.433 Acer truncatum HOM05D001607 ORTHO05D001893 3.6e-33 145.6 136 55.1
arahy.Tifrunner.gnm1.ann1.I8PQ41 Arachis hypogaea HOM05D001607 ORTHO05D001893 3.6e-33 145.6 124 55.6
MSTRG.27107 Avicennia marina HOM05D001607 ORTHO05D001893 3.6e-33 145.6 136 51.5
SalBow4G1573 Salvia bowleyana HOM05D001607 ORTHO05D001893 3.6e-33 145.6 136 52.2
TPR.G8164 Trifolium pratense HOM05D001607 ORTHO05D001893 3.6e-33 145.6 148 49.3
ATR0680G301 Amborella trichopoda HOM05D001607 ORTHO05D001893 4.7e-33 145.2 136 49.3
Aqoxy1G00239 Aquilegia oxysepala HOM05D001607 ORTHO05D001893 6.1e-33 144.8 126 55.6
Glyma.09G137200 Glycine max HOM05D001607 ORTHO05D001893 6.1e-33 144.8 126 54.0
Psat0s3405g0040 Pisum sativum HOM05D001607 ORTHO05D001893 6.1e-33 144.8 126 54.8
Psat6g198240 Pisum sativum HOM05D001607 ORTHO05D001893 6.1e-33 144.8 124 57.3
Glyma.16G182500 Glycine max HOM05D001607 ORTHO05D001893 8.0e-33 144.4 126 54.8
Ah.07g207010 Amaranthus hybridus HOM05D001607 ORTHO05D001893 1.0e-32 144.1 126 56.3
VMungo0720G1584 Vigna mungo HOM05D001607 ORTHO05D001893 1.0e-32 144.1 128 56.2
EL10Ac3g05618 Beta vulgaris HOM05D001607 ORTHO05D001893 1.4e-32 143.7 126 55.6
ClCG01G004440 Citrullus lanatus HOM05D001607 ORTHO05D001893 1.4e-32 143.7 145 50.3
Lj5g0010480 Lotus japonicus HOM05D001607 ORTHO05D001893 2.3e-32 142.9 126 55.6
Lalb_Chr02g0141081 Lupinus albus HOM05D001607 ORTHO05D001893 2.3e-32 142.9 127 55.1
PSO478G2555 Papaver somniferum HOM05D001607 ORTHO05D001893 4.0e-32 142.1 136 50.0
Phvul.004G114200 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 8.8e-32 141.0 126 57.1
VMungo0464G1130 Vigna mungo HOM05D001607 ORTHO05D001893 1.5e-31 140.2 126 54.8
Os02g0664300 Oryza sativa ssp. japonica HOM05D001607 ORTHO05D001893 2.0e-31 139.8 124 50.0
arahy.Tifrunner.gnm1.ann1.HZL4S5 Arachis hypogaea HOM05D001607 ORTHO05D001893 3.4e-31 139.0 126 54.0
arahy.Tifrunner.gnm1.ann1.M3PRP5 Arachis hypogaea HOM05D001607 ORTHO05D001893 3.4e-31 139.0 126 54.0
CARHR227400 Cardamine hirsuta HOM05D001607 ORTHO05D001893 3.4e-31 139.0 125 53.6
arahy.Tifrunner.gnm1.ann1.2YSW8E Arachis hypogaea HOM05D001607 ORTHO05D001893 4.4e-31 138.7 126 53.2
SGA_v2.0_scaffold60G21061 Striga asiatica HOM05D001607 ORTHO05D001893 4.4e-31 138.7 136 48.5
CDE08G0131 Ceratophyllum demersum HOM05D001607 ORTHO05D001893 5.7e-31 138.3 126 51.6
BcaNung04147 Brassica carinata HOM05D001607 ORTHO05D001893 9.8e-31 137.5 136 50.7
arahy.Tifrunner.gnm1.ann1.7Y045D Arachis hypogaea HOM05D001607 ORTHO05D001893 1.3e-30 137.1 124 53.2
BcaNung05068 Brassica carinata HOM05D001607 ORTHO05D001893 1.3e-30 137.1 136 50.0
C07p50960 Brassica napus HOM05D001607 ORTHO05D001893 1.3e-30 137.1 136 50.0
BolC7t45597H Brassica oleracea HOM05D001607 ORTHO05D001893 1.3e-30 137.1 136 50.0
Sp7g18940 Schrenkiella parvula HOM05D001607 ORTHO05D001893 1.3e-30 137.1 125 52.8
A03p52520 Brassica napus HOM05D001607 ORTHO05D001893 2.2e-30 136.3 136 49.3
BcaC09g51300 Brassica carinata HOM05D001607 ORTHO05D001893 2.8e-30 136.0 125 52.0
A01p12270 Brassica napus HOM05D001607 ORTHO05D001893 2.8e-30 136.0 125 52.0
C01p14680 Brassica napus HOM05D001607 ORTHO05D001893 2.8e-30 136.0 125 52.0
BolC1t01419H Brassica oleracea HOM05D001607 ORTHO05D001893 2.8e-30 136.0 125 52.0
BraA01t01171Z Brassica rapa HOM05D001607 ORTHO05D001893 2.8e-30 136.0 125 52.0
Thhalv10024222m.g Eutrema salsugineum HOM05D001607 ORTHO05D001893 2.8e-30 136.0 125 52.0
MBI18_g25519_MAGBIO Magnolia biondii HOM05D001607 ORTHO05D001893 2.8e-30 136.0 136 45.6
AL7G33300 Arabidopsis lyrata HOM05D001607 ORTHO05D001893 3.7e-30 135.6 125 52.0
BraA03t14327Z Brassica rapa HOM05D001607 ORTHO05D001893 3.7e-30 135.6 125 51.2
Carub.0007s2059 Capsella rubella HOM05D001607 ORTHO05D001893 2.4e-29 132.9 125 51.2
Zm00001eb249900 Zea mays HOM05D001607 ORTHO05D001893 2.4e-29 132.9 124 50.8
HPP92_011359 Vanilla planifolia HOM05D001607 ORTHO05D001893 4.1e-29 132.1 126 51.6
Aa31LG6G2920 Aethionema arabicum HOM05D001607 ORTHO05D001893 5.4e-29 131.7 125 49.6
AT4G20850 Arabidopsis thaliana HOM05D001607 ORTHO05D001893 7.0e-29 131.3 125 50.4
THA.LOC104824860 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 9.1e-29 131.0 137 46.7
unitig_46.g18794 Utricularia gibba HOM05D001607 ORTHO05D001893 2.7e-28 129.4 126 50.8
THA.LOC104812206 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 3.5e-28 129.0 125 51.2
SEGI_13029 Sequoiadendron giganteum HOM05D001607 ORTHO05D001893 4.5e-28 128.6 127 46.5
THA.LOC104824854 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 2.3e-27 126.3 125 48.0
AagrBONN_evm.TU.Sc2ySwM_344.3434 Anthoceros agrestis HOM05D001607 ORTHO05D001893 1.2e-25 120.6 126 48.4
Pp3c7_23000 Physcomitrium patens HOM05D001607 ORTHO05D001893 8.0e-25 117.9 126 46.0
SMO367G0172 Selaginella moellendorffii HOM05D001607 ORTHO05D001893 2.2e-22 109.8 136 41.2
Pp3c2_32420 Physcomitrium patens HOM05D001607 ORTHO05D001893 1.1e-21 107.5 125 43.2
Mapoly0069s0029 Marchantia polymorpha HOM05D001607 ORTHO05D001893 5.4e-21 105.1 128 39.8
Ca_05504_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 1.6e-20 103.6 62 72.6
Ca_05507_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 1.6e-20 103.6 62 72.6
arahy.Tifrunner.gnm1.ann1.L95KH7 Arachis hypogaea HOM05D001607 ORTHO05D001893 1.5e-18 97.1 57 73.7
CAN.G307.24 Capsicum annuum HOM05D001607 ORTHO05D001893 1.1e-10 70.9 40 70.0
RhsimUnG0162600 Rhododendron simsii HOM05D002175 ORTHO05D002303 3.1e-08 62.8 34 82.4
PRCOL_00005219 Prasinoderma coloniale HOM05D001607 ORTHO05D001893 7.5e-07 58.2 137 32.8


User provided reference genes

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