Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 5.8e-101 370.9 191 100.0
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 4.6e-98 361.3 200 95.0
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 4.9e-84 314.7 202 83.2
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.1e-80 303.5 197 81.7
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 4.7e-79 298.1 203 80.8
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 2.4e-78 295.8 201 78.1
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 4.4e-77 291.6 209 78.9
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 9.9e-77 290.4 202 81.2
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 1.3e-76 290.0 201 76.6
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 2.2e-76 289.3 202 77.7
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 2.2e-76 289.3 195 80.5
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 2.9e-76 288.9 202 80.7
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 7.1e-75 284.3 201 74.6
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 2.7e-74 282.3 202 73.8
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 3.5e-74 282.0 202 75.7
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 4.6e-74 281.6 201 74.6
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 4.6e-74 281.6 201 74.6
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 6.0e-74 281.2 200 75.0
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 6.0e-74 281.2 197 74.6
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 7.8e-74 280.8 197 75.1
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 1.0e-73 280.4 194 76.3
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 1.3e-73 280.0 198 75.8
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 1.7e-73 279.6 201 74.1
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 2.3e-73 279.3 199 75.4
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 3.9e-73 278.5 200 76.0
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 5.1e-73 278.1 203 74.9
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 1.1e-72 276.9 202 73.8
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.1e-72 276.9 178 83.1
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.1e-72 276.9 178 83.1
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 1.5e-72 276.6 200 73.0
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 1.9e-72 276.2 219 70.8
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 3.3e-72 275.4 205 73.2
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 4.3e-72 275.0 204 72.1
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 4.3e-72 275.0 204 72.1
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 4.3e-72 275.0 202 73.8
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 5.6e-72 274.6 200 74.5
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 5.6e-72 274.6 201 73.1
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 9.6e-72 273.9 203 72.4
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 9.6e-72 273.9 202 71.8
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.6e-71 273.1 201 73.1
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 2.8e-71 272.3 200 72.0
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 3.6e-71 271.9 201 72.1
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 3.6e-71 271.9 200 73.0
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 4.8e-71 271.6 207 70.5
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 1.4e-70 270.0 200 72.0
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 3.1e-70 268.9 185 74.6
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 4.0e-70 268.5 206 71.4
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 6.9e-70 267.7 202 71.8
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 9.0e-70 267.3 196 73.5
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 9.0e-70 267.3 193 74.6
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 1.2e-69 266.9 200 73.0
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 1.2e-69 266.9 204 74.0
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.2e-69 266.9 201 70.1
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 1.5e-69 266.5 201 71.6
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 5.8e-69 264.6 145 91.0
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 1.3e-68 263.5 202 73.3
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 3.8e-68 261.9 176 77.3
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 2.4e-67 259.2 171 76.6
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 4.2e-67 258.5 202 69.8
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 4.2e-67 258.5 177 75.7
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 9.3e-67 257.3 201 68.2
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 1.6e-66 256.5 204 68.1
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 3.5e-66 255.4 151 86.1
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 6.0e-66 254.6 235 62.1
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 1.8e-65 253.1 192 72.4
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 1.8e-65 253.1 145 89.0
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 3.0e-65 252.3 193 72.0
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 3.9e-65 251.9 192 71.9
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 5.1e-65 251.5 203 67.0
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 1.1e-64 250.4 145 86.9
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 1.1e-64 250.4 188 69.7
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.5e-64 250.0 247 58.7
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.9e-64 249.6 148 84.5
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 2.5e-64 249.2 193 71.0
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 4.3e-64 248.4 195 70.8
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.3e-64 248.4 144 84.7
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 7.4e-64 247.7 173 72.8
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 9.6e-64 247.3 145 84.8
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 9.6e-64 247.3 144 81.2
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 9.6e-64 247.3 202 71.3
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 1.6e-63 246.5 192 70.3
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.6e-63 246.5 145 85.5
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 2.1e-63 246.1 146 85.6
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 2.1e-63 246.1 145 82.8
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 2.1e-63 246.1 144 81.2
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 3.6e-63 245.4 146 84.9
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 3.6e-63 245.4 169 74.6
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 4.8e-63 245.0 153 78.4
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 6.2e-63 244.6 206 65.0
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 6.2e-63 244.6 145 84.1
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 8.1e-63 244.2 145 82.1
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.8e-62 243.0 206 65.5
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.8e-62 243.0 145 83.4
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 6.9e-62 241.1 209 66.5
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 6.9e-62 241.1 209 66.5
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 9.0e-62 240.7 141 87.2
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 2.0e-61 239.6 211 63.5
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 2.6e-61 239.2 199 70.4
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 3.4e-61 238.8 166 75.9
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 3.4e-61 238.8 166 75.9
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 3.4e-61 238.8 161 78.3
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 9.9e-61 237.3 144 84.0
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 1.7e-60 236.5 211 62.6
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 2.2e-60 236.1 144 84.0
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 2.2e-60 236.1 154 74.7
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 4.9e-60 235.0 145 84.1
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 1.4e-59 233.4 185 67.0
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.9e-59 233.0 156 75.6
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 2.4e-59 232.6 178 68.5
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 3.2e-59 232.3 176 69.3
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 3.2e-59 232.3 145 82.8
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 4.2e-59 231.9 209 64.6
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 7.1e-59 231.1 145 78.6
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 2.7e-58 229.2 156 75.0
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.7e-58 229.2 205 63.9
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 6.0e-58 228.0 185 67.0
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 6.0e-58 228.0 145 77.9
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 7.9e-58 227.6 210 61.4
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 7.9e-58 227.6 202 63.4
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 1.3e-57 226.9 157 74.5
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 6.7e-57 224.6 158 72.2
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 8.7e-57 224.2 208 62.0
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 7.4e-56 221.1 185 67.6
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 9.6e-56 220.7 168 69.6
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.6e-55 219.9 174 67.2
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 1.4e-54 216.9 148 75.0
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 3.1e-54 215.7 145 72.4
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 4.0e-54 215.3 122 87.7
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 5.3e-54 214.9 145 75.9
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 1.2e-53 213.8 168 68.5
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 4.5e-53 211.8 152 72.4
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.0e-52 210.7 145 73.1
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 3.2e-51 205.7 145 71.7
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 3.5e-50 202.2 122 81.1
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 1.0e-49 200.7 182 60.4
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 8.7e-49 197.6 156 67.3
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 8.7e-49 197.6 217 55.3
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.5e-48 196.8 189 60.8
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 4.8e-47 191.8 225 52.9
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 8.2e-47 191.0 146 64.4
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 3.1e-46 189.1 135 71.9
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 4.1e-46 188.7 145 64.8
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 4.5e-45 185.3 146 70.5
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 1.3e-44 183.7 154 64.9
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 2.9e-44 182.6 146 63.0
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 2.1e-42 176.4 106 81.1
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 4.6e-42 175.3 108 81.5
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 6.1e-42 174.9 106 83.0
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 1.5e-37 160.2 92 90.2
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 5.0e-36 155.2 90 90.0
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 3.0e-33 146.0 81 85.2
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 9.7e-32 141.0 131 60.3
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 1.8e-30 136.7 135 58.5
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 1.9e-27 126.7 197 45.7
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 1.6e-21 107.1 75 73.3
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 5.9e-21 105.1 96 56.2
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 6.5e-20 101.7 139 38.1
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 6.7e-17 91.7 157 32.5
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 8.2e-15 84.7 77 59.7
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 3.2e-11 72.8 68 57.4
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 9.4e-11 71.2 169 31.4
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 3.0e-09 66.2 84 48.8
COL.COLO4_35031 Corchorus olitorius HOM05D032132 ORTHO05D005059 2.8e-07 59.7 44 77.3
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 2.8e-07 59.7 32 81.2
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 4.8e-07 58.9 81 48.1


User provided reference genes

Program Settings