Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019792 Camellia sinensis var. sinensis HOM05D007233 ORTHO05D009043 4.1e-72 274.6 138 100.0
vmacro03232 Vaccinium macrocarpon HOM05D007233 ORTHO05D009043 8.0e-52 207.2 133 79.7
Migut.N02527 Erythranthe guttata HOM05D007233 ORTHO05D009043 5.2e-51 204.5 138 75.4
Manes.04G010800 Manihot esculenta HOM05D007233 ORTHO05D009043 5.2e-51 204.5 137 74.5
Rhsim13G0103700 Rhododendron simsii HOM05D007233 ORTHO05D009043 6.7e-51 204.1 133 78.2
MSTRG.17742 Avicennia marina HOM05D007233 ORTHO05D009043 1.1e-50 203.4 139 73.4
Potri.004G190200 Populus trichocarpa HOM05D007233 ORTHO05D009043 2.6e-50 202.2 137 75.9
Thecc.09G294400 Theobroma cacao HOM05D007233 ORTHO05D009043 2.6e-50 202.2 137 72.3
GSVIVG01031420001 Vitis vinifera HOM05D007233 ORTHO05D009043 2.6e-50 202.2 138 71.0
Sabra04G0127900 Salix brachista HOM05D007233 ORTHO05D009043 3.3e-50 201.8 137 73.7
SalBow3G1176 Salvia bowleyana HOM05D007233 ORTHO05D009043 5.7e-50 201.1 139 72.7
Gohir.D13G228300 Gossypium hirsutum HOM05D007233 ORTHO05D009043 9.7e-50 200.3 137 73.0
COL.COLO4_31139 Corchorus olitorius HOM05D007233 ORTHO05D009043 8.2e-49 197.2 137 70.1
SGA_v2.0_scaffold93G28323 Striga asiatica HOM05D007233 ORTHO05D009043 3.1e-48 195.3 143 68.5
TAR369G0714 Trochodendron aralioides HOM05D007233 ORTHO05D009043 9.1e-48 193.7 138 70.3
ClCG01G013980 Citrullus lanatus HOM05D007233 ORTHO05D009043 5.9e-47 191.0 137 70.8
Dinv29405 Davidia involucrata HOM05D007233 ORTHO05D009043 1.3e-46 189.9 172 61.6
Lj3g0012043 Lotus japonicus HOM05D007233 ORTHO05D009043 1.7e-46 189.5 137 71.5
Ca_10766_v3 Cicer arietinum L. HOM05D007233 ORTHO05D009043 2.9e-46 188.7 137 72.3
PGR119G2223 Punica granatum HOM05D007233 ORTHO05D009043 3.8e-46 188.3 136 68.4
Gohir.A13G223500 Gossypium hirsutum HOM05D007233 ORTHO05D009043 5.0e-46 188.0 137 71.5
CiPaw.14G104900 Carya illinoinensis HOM05D007233 ORTHO05D009043 6.5e-46 187.6 138 69.6
Lsat_1_v5_gn_1_61521 Lactuca sativa HOM05D007233 ORTHO05D009043 6.5e-46 187.6 139 69.8
Solyc11g066690.2 Solanum lycopersicum HOM05D007233 ORTHO05D009043 6.5e-46 187.6 141 67.4
Sopen11g026420 Solanum pennellii HOM05D007233 ORTHO05D009043 6.5e-46 187.6 141 67.4
EL10Ac9g21047 Beta vulgaris HOM05D007233 ORTHO05D009043 8.5e-46 187.2 140 67.1
VMungo1127G1048 Vigna mungo HOM05D007233 ORTHO05D009043 1.9e-45 186.0 137 67.2
Carub.0001s0774 Capsella rubella HOM05D007233 ORTHO05D009043 3.2e-45 185.3 137 66.4
SHI05395 Sapria himalayana HOM05D007233 ORTHO05D009043 3.2e-45 185.3 137 67.9
Phvul.011G088600 Phaseolus vulgaris HOM05D007233 ORTHO05D009043 7.2e-45 184.1 137 66.4
AT1G08390 Arabidopsis thaliana HOM05D007233 ORTHO05D009043 9.4e-45 183.7 137 65.7
Ciclev10030019m.g Citrus clementina HOM05D007233 ORTHO05D009043 9.4e-45 183.7 138 68.1
Cc01_g10010 Coffea canephora HOM05D007233 ORTHO05D009043 9.4e-45 183.7 140 65.7
QL01p014111 Quercus lobata HOM05D007233 ORTHO05D009043 9.4e-45 183.7 133 69.2
Duzib170G0414 Durio zibethinus HOM05D007233 ORTHO05D009043 1.2e-44 183.3 137 70.1
AL1G18800 Arabidopsis lyrata HOM05D007233 ORTHO05D009043 2.1e-44 182.6 137 65.0
PGSC0003DMG400000464 Solanum tuberosum HOM05D007233 ORTHO05D009043 2.7e-44 182.2 141 65.2
THA.LOC104826400 Tarenaya hassleriana HOM05D007233 ORTHO05D009043 2.7e-44 182.2 137 65.7
Peaxi162Scf00150g00710 Petunia axillaris HOM05D007233 ORTHO05D009043 3.6e-44 181.8 141 66.0
Sed0016181 Sechium edule HOM05D007233 ORTHO05D009043 3.6e-44 181.8 137 67.2
TPR.G32017 Trifolium pratense HOM05D007233 ORTHO05D009043 3.6e-44 181.8 138 70.3
Haze_23494 Corylus avellana HOM05D007233 ORTHO05D009043 4.7e-44 181.4 138 68.1
Prupe.6G116400 Prunus persica HOM05D007233 ORTHO05D009043 6.1e-44 181.0 136 67.6
CsaV3_1G014310 Cucumis sativus L. HOM05D007233 ORTHO05D009043 8.0e-44 180.6 137 66.4
Medtr4g056300 Medicago truncatula HOM05D007233 ORTHO05D009043 8.0e-44 180.6 137 70.1
Hund07722 Selenicereus undatus HOM05D007233 ORTHO05D009043 8.0e-44 180.6 138 67.4
unitig_699.g19183 Utricularia gibba HOM05D007233 ORTHO05D009043 1.4e-43 179.9 135 67.4
Aqoxy1G01014 Aquilegia oxysepala HOM05D007233 ORTHO05D009043 1.8e-43 179.5 133 66.2
Aa31LG1G6480 Aethionema arabicum HOM05D007233 ORTHO05D009043 2.3e-43 179.1 137 62.8
Lalb_Chr03g0027851 Lupinus albus HOM05D007233 ORTHO05D009043 2.3e-43 179.1 137 67.9
MELO3C004843.2 Cucumis melo HOM05D007233 ORTHO05D009043 3.0e-43 178.7 137 66.4
CARHR008260 Cardamine hirsuta HOM05D007233 ORTHO05D009043 6.8e-43 177.6 137 63.5
HanXRQChr11g0345871 Helianthus annuus HOM05D007233 ORTHO05D009043 6.8e-43 177.6 139 64.7
Nitab4.5_0000442g0180 Nicotiana tabacum HOM05D007233 ORTHO05D009043 6.8e-43 177.6 142 66.9
Sp1g07040 Schrenkiella parvula HOM05D007233 ORTHO05D009043 8.8e-43 177.2 137 64.2
A06p05410 Brassica napus HOM05D007233 ORTHO05D009043 2.0e-42 176.0 137 64.2
BraA06t23750Z Brassica rapa HOM05D007233 ORTHO05D009043 2.0e-42 176.0 137 64.2
DCAR_015489 Daucus carota HOM05D007233 ORTHO05D009043 2.6e-42 175.6 140 67.1
BcaB07g34087 Brassica carinata HOM05D007233 ORTHO05D009043 4.4e-42 174.9 137 63.5
C05p06530 Brassica napus HOM05D007233 ORTHO05D009043 4.4e-42 174.9 137 63.5
BolC5t29413H Brassica oleracea HOM05D007233 ORTHO05D009043 4.4e-42 174.9 137 63.5
Glyma.11G190700 Glycine max HOM05D007233 ORTHO05D009043 4.4e-42 174.9 145 62.8
CAN.G644.46 Capsicum annuum HOM05D007233 ORTHO05D009043 1.4e-40 169.9 141 63.8
Thhalv10009077m.g Eutrema salsugineum HOM05D007233 ORTHO05D009043 4.1e-40 168.3 137 62.0
CANSAT78G0435 Cannabis sativa HOM05D007233 ORTHO05D009043 1.2e-39 166.8 139 61.9
ECA248G0451 Erigeron canadensis HOM05D007233 ORTHO05D009043 1.6e-39 166.4 138 61.6
FvH4_3g30010 Fragaria vesca HOM05D007233 ORTHO05D009043 2.0e-39 166.0 137 62.8
FAN25G1956 Fragaria x ananassa HOM05D007233 ORTHO05D009043 4.5e-39 164.9 137 62.0
AUR62031769 Chenopodium quinoa HOM05D007233 ORTHO05D009043 2.9e-38 162.2 143 60.1
ATR0665G357 Amborella trichopoda HOM05D007233 ORTHO05D009043 3.8e-38 161.8 133 63.9
FAN21G0394 Fragaria x ananassa HOM05D007233 ORTHO05D009043 6.5e-38 161.0 137 61.3
RcHm_v2.0_Chr5g0055931 Rosa chinensis HOM05D007233 ORTHO05D009043 1.5e-37 159.8 137 61.3
arahy.Tifrunner.gnm1.ann1.5NF9YD Arachis hypogaea HOM05D007233 ORTHO05D009043 1.9e-37 159.5 159 56.6
Eucgr.F03331 Eucalyptus grandis HOM05D007233 ORTHO05D009043 3.2e-37 158.7 148 58.1
MD11G1153700 Malus domestica HOM05D007233 ORTHO05D009043 1.4e-35 153.3 136 61.0
Ah.01g016160 Amaranthus hybridus HOM05D007233 ORTHO05D009043 2.0e-34 149.4 146 55.5
PSO339G4613 Papaver somniferum HOM05D007233 ORTHO05D009043 6.3e-33 144.4 138 58.0
MBI04_g22192_MAGBIO Magnolia biondii HOM05D007233 ORTHO05D009043 8.3e-33 144.1 112 65.2
PSO063G0378 Papaver somniferum HOM05D007233 ORTHO05D009043 1.8e-32 142.9 138 57.2
Cpa.g.sc47.40 Carica papaya HOM05D007233 ORTHO05D009043 3.5e-31 138.7 103 68.0
Atru.chr3.3421 Acer truncatum HOM05D007233 ORTHO05D009043 2.9e-30 135.6 99 67.7
Gorai.013G259000 Gossypium raimondii HOM05D007233 ORTHO05D009043 5.0e-30 134.8 102 68.6
ClCG08G000500 Citrullus lanatus HOM05D007233 ORTHO05D009043 2.5e-29 132.5 103 68.0
TWI31G0123 Tripterygium wilfordii HOM05D007233 ORTHO05D009043 5.7e-26 121.3 123 53.7
Psat0s3169g0040 Pisum sativum HOM05D007233 ORTHO05D009043 7.5e-26 120.9 104 65.4
Nn6g35132 Nelumbo nucifera HOM05D007233 ORTHO05D009043 2.4e-24 115.9 88 61.4
Haze_23472 Corylus avellana HOM05D007233 ORTHO05D009043 7.0e-24 114.4 138 52.2
Os03g0684300 Oryza sativa ssp. japonica HOM05D007233 ORTHO05D009043 9.2e-24 114.0 142 47.9
Cfa010203 Carpinus fangiana HOM05D007233 ORTHO05D009043 3.5e-23 112.1 98 61.2
Cfa020420 Carpinus fangiana HOM05D007233 ORTHO05D009043 3.5e-23 112.1 95 58.9
Haze_23491 Corylus avellana HOM05D007233 ORTHO05D009043 1.3e-22 110.2 148 44.6
Haze_23479 Corylus avellana HOM05D007233 ORTHO05D009043 6.6e-22 107.8 94 59.6
Pp3c26_4940 Physcomitrium patens HOM05D007233 ORTHO05D009043 8.6e-22 107.5 139 44.6
Pp3c26_4950 Physcomitrium patens HOM05D007233 ORTHO05D009043 8.6e-22 107.5 139 44.6
Zm00001eb053200 Zea mays HOM05D007233 ORTHO05D009043 1.1e-21 107.1 143 49.0
arahy.Tifrunner.gnm1.ann1.9UEW9D Arachis hypogaea HOM05D007233 ORTHO05D009043 2.8e-20 102.4 126 48.4
Mapoly0016s0182 Marchantia polymorpha HOM05D007233 ORTHO05D009043 5.2e-19 98.2 134 44.0
Oeu035529.3 Olea europaea HOM05D007233 ORTHO05D009043 4.9e-17 91.7 83 57.8
CDE02G1642 Ceratophyllum demersum HOM05D007233 ORTHO05D009043 5.4e-16 88.2 85 60.0
Sc12g0003860 Simmondsia chinensis HOM05D007233 ORTHO05D009043 7.0e-16 87.8 80 61.2
AagrBONN_evm.TU.Sc2ySwM_344.3909 Anthoceros agrestis HOM05D007233 ORTHO05D009043 1.6e-15 86.7 109 45.0
Haze_23488 Corylus avellana HOM05D007233 ORTHO05D009043 4.3e-13 78.6 81 55.6
Oeu000616.2 Olea europaea HOM05D007233 ORTHO05D009043 9.5e-13 77.4 96 49.0
Duzib168G0428 Durio zibethinus HOM05D007233 ORTHO05D009043 4.7e-12 75.1 105 45.7
Potri.002G256001 Populus trichocarpa HOM05D007233 ORTHO05D009043 6.4e-09 64.7 126 38.1
arahy.Tifrunner.gnm1.ann1.3ZRX2Z Arachis hypogaea HOM05D007233 ORTHO05D009043 8.3e-09 64.3 70 52.9
Actinidia14340 Actinidia chinensis HOM05D007233 ORTHO05D009043 3.2e-08 62.4 78 53.8


User provided reference genes

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